SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G00150 | AT | Annotation by Michelle Graham. TAIR10: GRAS family transcription factor | chr4:57429-59105 REVERSE LENGTH=558 | SoyBase | E_val: 5.00E-123 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0007623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian rhythm | SoyBase | N/A | ISS |
| GO:0010492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of shoot apical meristem identity | SoyBase | N/A | ISS |
| GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
| GO:0048768 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell tip growth | SoyBase | N/A | ISS |
| GO:0051301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell division | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PF03514 | PFAM | GRAS family transcription factor | JGI | ISS | |
| UniRef100_C9EHU3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SCL6 n=1 Tax=Citrus trifoliata RepID=C9EHU3_PONTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JKU2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JKU2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g03760 not represented in the dataset |
Glyma03g03760 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g33270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g031800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g03760.2 sequence type=transcript gene model=Glyma03g03760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGAGAGAGCACTTTACCACTTTTATACGCTGCACGCATCTACCTTACAAAACACAAGCAACAAAGAGTGTTCCACACAGAAAACACAAAGAAGAATCACATTCATTCATCTCATGGCTTTCTTCTTCTTCCCTCATCACACCTTCTTCAACTGTTTCAATCTCAACACGCCACAGAAGTATCAGATAGAAGAAGAAAAAAACAAGCTTTATTTTTAGAGGGTGCCCAAGTTGTTTGTTCTTTTGTTTTTCCTGCAGCACTCTATGTGTTTGTTCAGTGTTCCTCGAAGATTTGTATTGTCCCCAAAACAAAAACAAAAATTCAGCCTTTTTAGCTCTTCCAACCCGAAATTTCTTGTTTTTTTTATGTGTTCTTCATTTGGGGTGGTTTAAATTTGCTTAATTTGTAATCTTTTTTTTCTGGGGTGGGTTGTGGGGAAATAAAGGTGGTACCTTTTGAAAAACTGGAGTCTTTTGGGTGGTGGGTTTTGTGGTCACCAATTTTATTGTTCTTCCCCCCCCTAGGCAACTTTCTTAGATGAAGGTCATGCCCTTGCCTTTTGAGGAATTTCAAGGGAAGGGAGTGTTGGATTTCTCTTCAGCCTCAGATTCATTTTCAGTGCTTTTGCATAACCCACAACCAAAGTGGACCATAGACAAAGAGGACTATTGCTATGTGGGCAGCATCACTGAGCCCACCTCAGTTCTTGGCTCCAGAAGAAGCCTTAGCCCTCCCACTTCCTCCTCCACAATGTCTTCTTCTCTTGGCAGCAGCAACAACAGCACTAGCAAGGGTGGTGGTGGCACCTCAGCCAACACCACCAACAACCCAACACCACCCTCAGACTACAACAACAACAACCCTCCTCAGGAATCCAGCCCCGAAAAATGTGGCATCAGGATGGAGGACTGGGAGTGCCAAGATCAATCCATCCTGAGGCTAATCATGGGGGATGTTGAAGACCCTTCTGCTGGATTGAGCAAGCTTCTGCAAAGCACTGCCTGTGGCTCTCAAAGTGCTGATTTCAATGCTGGATTTGGTGTTGTGGATCAACAAGGATTGAATATGAATATGAATATGAATATGGTGGGTGGTAATATTGACCCAAATTACCCTGCTGGTTTCCCTTTCATTGCTGAGAATATGGATGGCCAGAATGCCAAGGCTGGTTCTGGGACTGGCCAGGTTTCAGAATCTGTTGTTTTCTCTGCCAACAATCCTCTCATGGTGTCATCATCTGTTTCCCCTGGTGTGTTCACTTCTCAGCAGCAGCAGCAAGAGTTTGGAGTGGTGGATGAGAAGCCTCAGGTGCAGGAACAGCAGGTTTTCTCTCAGCATCAGGCGAAACACCATCTCTTTGACACCATTGGGCACAATTTTCAAGCTCCAAGGTTGTCCCTTTTGGATTCAGGGCAAGAAGTGTTTGGTAGGAGGCAGCAAACACAGCTTCCATTGTTTCCTCACCATATGCAGCAACAACAACAACAACAATCAATGGTTATGCCTTCTACTAAACAGCAGAAGGTGAGTTCCACCGGAGACGATGCAAGCCACCAGCTTCAGCAGGCTATATTTGATCAGTTATACAAAACTGCTGAGCTGATAGAAGCTGGTAATCCGGTTCATGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCCCCTATTGGTAGGCCTTTTCAGAGGGCTGCTTTCTACATGAAGGAGGCCTTGATGTCACTGCTTCATTCAAATGCTCACAGTTTCATGGCTTTTTCGCCAATTAGTTTCATTTTTAAAATTGGAGCTTATAAGTCCTTTTCTGAGATATCACCTGTTCTTCAGTTTGCCAATTTTACTTGCAACCAAGCCCTCATTGAAGCTGTGGAAAGGTCTGACAGAATTCATGTTATCGATTTCGATATTGGGTTTGGAGTGCAGTGGTCATCTTTTATGCAAGAGATTGCCTTGAGAAGTAGTGGTGCACCTTCACTCAAAGTCACTGCCATTGTGTCACCCTCCACTTGTGATGAGGTTGAGCTCAATTTCACTAGAGAGAATTTGATTCAATACGCGAAAGACATCAATGTGTCATTTGAATTCAATGTTTTGAGCATTGAATCCTTGAACTCTCCTTCCTGTCCACTGCTTGGTAAATTCTTTGATAATGAGGCAATTGTGGTGAATATGCCAGTCTCAAGTTTCACAAACTATCCATCATTGTTCCCTTCCGTTCTTCACTTTGTGAAGCAACTCAGGCCAAAAGTTGTGGTCACTTTGGACAGAATTTGTGATCAAATGGATGTACCACTTCCTACCAACGTAGTCCATGTTCTCCAATGTTATTCGGCCCTGCTTGAATCGTTGGATGCGGTGAATGTGAATCTTGATGTCCTCCAAAAGATTGAGAGGCATTTCATCCAGCCAGCTATCAAGAAAATTATACTTGGCCACCACCATTTTCAAGAAAAATTACCCCCATGGAGGAACCTCTTTATGCAATCTGGATTCTCTCCATTCACATTTAGCAACTTCACAGAAGCTCAAGCTGAGTGTCTAGTTCAGAGGGCACCTGTGAGGGGATTTCATGTGGAGAGAAAGCCTTCATCACTTGTTCTATGCTGGCAGAAGAAAGAACTCATCTCAGTTTCTACTTGGAGATGCTGAGGACTGAGGAGCAGCAGCAGAAGCTAATTACCTTATATTTTTAAAGGTGCATGGTAACTTACATTGCAGTTTATGTAATTGTTTGTGTAATTTAGGCTTATTGATGAGATCCACACCCAAATGTTTTCTTAACTGCATGGGTTGGAATCTACCATTCTGTAGTTCTAATATTTACTAGTATGTCACTTTGAACATGGGTAGTAATTATGCCTTTCCCCATTCCCATCATCTAAAGATGGGTAACTGTTTCTTTGTTATCTTGAACACAAAGCAAATTGCTTAGTAAGAAACGAACAATTTAGCTAAGAATGCAGCCTCTATTTTCTTCTTCATGGTTTAGTCTATTCTTTCTTGATTAATGTATGATGACCTGAATTTGGGATACATGATTTAAATCTGTAGCATGAAAATCTTGTGCCAATTCAA
>Glyma03g03760.1 sequence type=CDS gene model=Glyma03g03760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGTCATGCCCTTGCCTTTTGAGGAATTTCAAGGGAAGGGAGTGTTGGATTTCTCTTCAGCCTCAGATTCATTTTCAGTGCTTTTGCATAACCCACAACCAAAGTGGACCATAGACAAAGAGGACTATTGCTATGTGGGCAGCATCACTGAGCCCACCTCAGTTCTTGGCTCCAGAAGAAGCCTTAGCCCTCCCACTTCCTCCTCCACAATGTCTTCTTCTCTTGGCAGCAGCAACAACAGCACTAGCAAGGGTGGTGGTGGCACCTCAGCCAACACCACCAACAACCCAACACCACCCTCAGACTACAACAACAACAACCCTCCTCAGGAATCCAGCCCCGAAAAATGTGGCATCAGGATGGAGGACTGGGAGTGCCAAGATCAATCCATCCTGAGGCTAATCATGGGGGATGTTGAAGACCCTTCTGCTGGATTGAGCAAGCTTCTGCAAAGCACTGCCTGTGGCTCTCAAAGTGCTGATTTCAATGCTGGATTTGGTGTTGTGGATCAACAAGGATTGAATATGAATATGAATATGAATATGGTGGGTGGTAATATTGACCCAAATTACCCTGCTGGTTTCCCTTTCATTGCTGAGAATATGGATGGCCAGAATGCCAAGGCTGGTTCTGGGACTGGCCAGGTTTCAGAATCTGTTGTTTTCTCTGCCAACAATCCTCTCATGGTGTCATCATCTGTTTCCCCTGGTGTGTTCACTTCTCAGCAGCAGCAGCAAGAGTTTGGAGTGGTGGATGAGAAGCCTCAGGTTATTAATCCACAGTTTATGTTGAACCAGAACCAAGTTCAGTTCTCAGATAACCCTTCTTTCTTTTTGCCATTGATGTACCCTCAGGTGCAGGAACAGCAGGTTTTCTCTCAGCATCAGGCGAAACACCATCTCTTTGACACCATTGGGCACAATTTTCAAGCTCCAAGGTTGTCCCTTTTGGATTCAGGGCAAGAAGTGTTTGGTAGGAGGCAGCAAACACAGCTTCCATTGTTTCCTCACCATATGCAGCAACAACAACAACAACAATCAATGGTTATGCCTTCTACTAAACAGCAGAAGGTGAGTTCCACCGGAGACGATGCAAGCCACCAGCTTCAGCAGGCTATATTTGATCAGTTATACAAAACTGCTGAGCTGATAGAAGCTGGTAATCCGGTTCATGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCCCCTATTGGTAGGCCTTTTCAGAGGGCTGCTTTCTACATGAAGGAGGCCTTGATGTCACTGCTTCATTCAAATGCTCACAGTTTCATGGCTTTTTCGCCAATTAGTTTCATTTTTAAAATTGGAGCTTATAAGTCCTTTTCTGAGATATCACCTGTTCTTCAGTTTGCCAATTTTACTTGCAACCAAGCCCTCATTGAAGCTGTGGAAAGGTCTGACAGAATTCATGTTATCGATTTCGATATTGGGTTTGGAGTGCAGTGGTCATCTTTTATGCAAGAGATTGCCTTGAGAAGTAGTGGTGCACCTTCACTCAAAGTCACTGCCATTGTGTCACCCTCCACTTGTGATGAGGTTGAGCTCAATTTCACTAGAGAGAATTTGATTCAATACGCGAAAGACATCAATGTGTCATTTGAATTCAATGTTTTGAGCATTGAATCCTTGAACTCTCCTTCCTGTCCACTGCTTGGTAAATTCTTTGATAATGAGGCAATTGTGGTGAATATGCCAGTCTCAAGTTTCACAAACTATCCATCATTGTTCCCTTCCGTTCTTCACTTTGTGAAGCAACTCAGGCCAAAAGTTGTGGTCACTTTGGACAGAATTTGTGATCAAATGGATGTACCACTTCCTACCAACGTAGTCCATGTTCTCCAATGTTATTCGGCCCTGCTTGAATCGTTGGATGCGGTGAATGTGAATCTTGATGTCCTCCAAAAGATTGAGAGGCATTTCATCCAGCCAGCTATCAAGAAAATTATACTTGGCCACCACCATTTTCAAGAAAAATTACCCCCATGGAGGAACCTCTTTATGCAATCTGGATTCTCTCCATTCACATTTAGCAACTTCACAGAAGCTCAAGCTGAGTGTCTAGTTCAGAGGGCACCTGTGAGGGGATTTCATGTGGAGAGAAAGCCTTCATCACTTGTTCTATGCTGGCAGAAGAAAGAACTCATCTCAGTTTCTACTTGGAGATGCTGA >Glyma03g03760.2 sequence type=CDS gene model=Glyma03g03760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGTCATGCCCTTGCCTTTTGAGGAATTTCAAGGGAAGGGAGTGTTGGATTTCTCTTCAGCCTCAGATTCATTTTCAGTGCTTTTGCATAACCCACAACCAAAGTGGACCATAGACAAAGAGGACTATTGCTATGTGGGCAGCATCACTGAGCCCACCTCAGTTCTTGGCTCCAGAAGAAGCCTTAGCCCTCCCACTTCCTCCTCCACAATGTCTTCTTCTCTTGGCAGCAGCAACAACAGCACTAGCAAGGGTGGTGGTGGCACCTCAGCCAACACCACCAACAACCCAACACCACCCTCAGACTACAACAACAACAACCCTCCTCAGGAATCCAGCCCCGAAAAATGTGGCATCAGGATGGAGGACTGGGAGTGCCAAGATCAATCCATCCTGAGGCTAATCATGGGGGATGTTGAAGACCCTTCTGCTGGATTGAGCAAGCTTCTGCAAAGCACTGCCTGTGGCTCTCAAAGTGCTGATTTCAATGCTGGATTTGGTGTTGTGGATCAACAAGGATTGAATATGAATATGAATATGAATATGGTGGGTGGTAATATTGACCCAAATTACCCTGCTGGTTTCCCTTTCATTGCTGAGAATATGGATGGCCAGAATGCCAAGGCTGGTTCTGGGACTGGCCAGGTTTCAGAATCTGTTGTTTTCTCTGCCAACAATCCTCTCATGGTGTCATCATCTGTTTCCCCTGGTGTGTTCACTTCTCAGCAGCAGCAGCAAGAGTTTGGAGTGGTGGATGAGAAGCCTCAGGTGCAGGAACAGCAGGTTTTCTCTCAGCATCAGGCGAAACACCATCTCTTTGACACCATTGGGCACAATTTTCAAGCTCCAAGGTTGTCCCTTTTGGATTCAGGGCAAGAAGTGTTTGGTAGGAGGCAGCAAACACAGCTTCCATTGTTTCCTCACCATATGCAGCAACAACAACAACAACAATCAATGGTTATGCCTTCTACTAAACAGCAGAAGGTGAGTTCCACCGGAGACGATGCAAGCCACCAGCTTCAGCAGGCTATATTTGATCAGTTATACAAAACTGCTGAGCTGATAGAAGCTGGTAATCCGGTTCATGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCCCCTATTGGTAGGCCTTTTCAGAGGGCTGCTTTCTACATGAAGGAGGCCTTGATGTCACTGCTTCATTCAAATGCTCACAGTTTCATGGCTTTTTCGCCAATTAGTTTCATTTTTAAAATTGGAGCTTATAAGTCCTTTTCTGAGATATCACCTGTTCTTCAGTTTGCCAATTTTACTTGCAACCAAGCCCTCATTGAAGCTGTGGAAAGGTCTGACAGAATTCATGTTATCGATTTCGATATTGGGTTTGGAGTGCAGTGGTCATCTTTTATGCAAGAGATTGCCTTGAGAAGTAGTGGTGCACCTTCACTCAAAGTCACTGCCATTGTGTCACCCTCCACTTGTGATGAGGTTGAGCTCAATTTCACTAGAGAGAATTTGATTCAATACGCGAAAGACATCAATGTGTCATTTGAATTCAATGTTTTGAGCATTGAATCCTTGAACTCTCCTTCCTGTCCACTGCTTGGTAAATTCTTTGATAATGAGGCAATTGTGGTGAATATGCCAGTCTCAAGTTTCACAAACTATCCATCATTGTTCCCTTCCGTTCTTCACTTTGTGAAGCAACTCAGGCCAAAAGTTGTGGTCACTTTGGACAGAATTTGTGATCAAATGGATGTACCACTTCCTACCAACGTAGTCCATGTTCTCCAATGTTATTCGGCCCTGCTTGAATCGTTGGATGCGGTGAATGTGAATCTTGATGTCCTCCAAAAGATTGAGAGGCATTTCATCCAGCCAGCTATCAAGAAAATTATACTTGGCCACCACCATTTTCAAGAAAAATTACCCCCATGGAGGAACCTCTTTATGCAATCTGGATTCTCTCCATTCACATTTAGCAACTTCACAGAAGCTCAAGCTGAGTGTCTAGTTCAGAGGGCACCTGTGAGGGGATTTCATGTGGAGAGAAAGCCTTCATCACTTGTTCTATGCTGGCAGAAGAAAGAACTCATCTCAGTTTCTACTTGGAGATGCTGA
>Glyma03g03760.1 sequence type=predicted peptide gene model=Glyma03g03760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKVMPLPFEEFQGKGVLDFSSASDSFSVLLHNPQPKWTIDKEDYCYVGSITEPTSVLGSRRSLSPPTSSSTMSSSLGSSNNSTSKGGGGTSANTTNNPTPPSDYNNNNPPQESSPEKCGIRMEDWECQDQSILRLIMGDVEDPSAGLSKLLQSTACGSQSADFNAGFGVVDQQGLNMNMNMNMVGGNIDPNYPAGFPFIAENMDGQNAKAGSGTGQVSESVVFSANNPLMVSSSVSPGVFTSQQQQQEFGVVDEKPQVINPQFMLNQNQVQFSDNPSFFLPLMYPQVQEQQVFSQHQAKHHLFDTIGHNFQAPRLSLLDSGQEVFGRRQQTQLPLFPHHMQQQQQQQSMVMPSTKQQKVSSTGDDASHQLQQAIFDQLYKTAELIEAGNPVHAQGILARLNHQLSPIGRPFQRAAFYMKEALMSLLHSNAHSFMAFSPISFIFKIGAYKSFSEISPVLQFANFTCNQALIEAVERSDRIHVIDFDIGFGVQWSSFMQEIALRSSGAPSLKVTAIVSPSTCDEVELNFTRENLIQYAKDINVSFEFNVLSIESLNSPSCPLLGKFFDNEAIVVNMPVSSFTNYPSLFPSVLHFVKQLRPKVVVTLDRICDQMDVPLPTNVVHVLQCYSALLESLDAVNVNLDVLQKIERHFIQPAIKKIILGHHHFQEKLPPWRNLFMQSGFSPFTFSNFTEAQAECLVQRAPVRGFHVERKPSSLVLCWQKKELISVSTWRC* >Glyma03g03760.2 sequence type=predicted peptide gene model=Glyma03g03760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKVMPLPFEEFQGKGVLDFSSASDSFSVLLHNPQPKWTIDKEDYCYVGSITEPTSVLGSRRSLSPPTSSSTMSSSLGSSNNSTSKGGGGTSANTTNNPTPPSDYNNNNPPQESSPEKCGIRMEDWECQDQSILRLIMGDVEDPSAGLSKLLQSTACGSQSADFNAGFGVVDQQGLNMNMNMNMVGGNIDPNYPAGFPFIAENMDGQNAKAGSGTGQVSESVVFSANNPLMVSSSVSPGVFTSQQQQQEFGVVDEKPQVQEQQVFSQHQAKHHLFDTIGHNFQAPRLSLLDSGQEVFGRRQQTQLPLFPHHMQQQQQQQSMVMPSTKQQKVSSTGDDASHQLQQAIFDQLYKTAELIEAGNPVHAQGILARLNHQLSPIGRPFQRAAFYMKEALMSLLHSNAHSFMAFSPISFIFKIGAYKSFSEISPVLQFANFTCNQALIEAVERSDRIHVIDFDIGFGVQWSSFMQEIALRSSGAPSLKVTAIVSPSTCDEVELNFTRENLIQYAKDINVSFEFNVLSIESLNSPSCPLLGKFFDNEAIVVNMPVSSFTNYPSLFPSVLHFVKQLRPKVVVTLDRICDQMDVPLPTNVVHVLQCYSALLESLDAVNVNLDVLQKIERHFIQPAIKKIILGHHHFQEKLPPWRNLFMQSGFSPFTFSNFTEAQAECLVQRAPVRGFHVERKPSSLVLCWQKKELISVSTWRC*
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