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Report for Sequence Feature Glyma03g03620

Feature Type:gene_model
Chromosome:Gm03
Start:3420542
stop:3421382
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g03620
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G03960AT Annotation by Michelle Graham. TAIR10: TCP-1/cpn60 chaperonin family protein | chr3:1024432-1027604 FORWARD LENGTH=549 SoyBaseE_val: 2.00E-16ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0007010GO-bp Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization SoyBaseN/AISS
GO:0009220GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0010498GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process SoyBaseN/AISS
GO:0034968GO-bp Annotation by Michelle Graham. GO Biological Process: histone lysine methylation SoyBaseN/AISS
GO:0044267GO-bp Annotation by Michelle Graham. GO Biological Process: cellular protein metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0051082GO-mf Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding SoyBaseN/AISS
PF00118PFAM TCP-1/cpn60 chaperonin family JGI ISS
UniRef100_G7KQ56UniRef Annotation by Michelle Graham. Most informative UniRef hit: T-complex protein 1 subunit theta n=1 Tax=Medicago truncatula RepID=G7KQ56_MEDTR SoyBaseE_val: 6.00E-20ISS
UniRef100_UPI0002339925UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339925 related cluster n=1 Tax=unknown RepID=UPI0002339925 SoyBaseE_val: 9.00E-31ISS

Expression Patterns of Glyma03g03620
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g03620 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma03g03620
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g03620
>Glyma03g03620.1   sequence type=CDS   gene model=Glyma03g03620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATGGACTAAACATTTTCAATGGCCCTGCAGGTTGGATCAATATGCTATAGCAAAATTTGCTAAAAGTTTTCAAATGATTCCTAGAACTTTGGCTGAGAATGTTGGGTTCAATGCTGGCATTGATTTGGAAGAAGGCGTATGTAAGGATGTCTCAACCTTGTGCATTTGGGATCTCCATGTGACTAAGGTTCTTGTAATTGATGGAGCTGATGCTTTCTTCGACTGTTATTTGCTCTTAAATATGCTACAGATGCTGCATGCACTGTACTACGTGTGGACTAGTTTCTTTATGATGGCAAAACCAGCTGGTGGCATGGATGAAGACTAA
Predicted protein sequences of Glyma03g03620
>Glyma03g03620.1   sequence type=predicted peptide   gene model=Glyma03g03620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGWTKHFQWPCRLDQYAIAKFAKSFQMIPRTLAENVGFNAGIDLEEGVCKDVSTLCIWDLHVTKVLVIDGADAFFDCYLLLNMLQMLHALYYVWTSFFMMAKPAGGMDED*






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