SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G05100 | AT | Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:1424155-1425667 FORWARD LENGTH=336 | SoyBase | E_val: 4.00E-162 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_B9REU9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine-dependent methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9REU9_RICCO | SoyBase | E_val: 9.00E-169 | ISS |
| UniRef100_C6TH26 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TH26_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g03300 not represented in the dataset |
Glyma03g03300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g33610 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g028300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g03300.4 sequence type=transcript gene model=Glyma03g03300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATCATTAATGATTTCACTCACGACCGGTACCACAAAACATGGGTTAACTTCTACCCCTGTTCATTGCTCCTCTTTCGTTCTTCTCTCTTTCTCTTTCAACGCATTCCAACCCTGTGGCGCTATACCCTCCTAGATCTACTCTCTAACCGCTTCACAGGCTGGGACTAAGAGCAGTGGTTAGTCATACATGGCACTCTTGGCTTCGCGAGCAATGTCGAAGGGTGTGGTGGTATCAGTGCCTGTTCTTGTTCTATCTGCTTTAGTGGCCACTGTTTTCCTGTTCTTCCTTTTGTCCTCTCTTTCATCCTGCTCCTGCCCTACTCCTTCAGAAATATCTGCCTCCAATGCTAGGAGTGTTGGTGTTGGCATTGGTGTTTCTGAGTCTAGCAGCAGTAATGTTCCGGTAGCAACAACGAAGGAGTCTAGCAGCGGTTATATTCCGTTATCAACGAGGAAGGAGGATGTTGAGTGGGTGAAGGATCAAATCCGAGCAAATGGGCTTCAAATGCATGACAATGTGCTTCGCAAGGGTATTAATCCCCGCACTCGGGCTCAGCAACTTGAGGATTTTAGACGATTTAAGGGCATATCTCACTATGAGGGACCTGATTCAGATAATCACACATCCTTGCCATGCCCTGGGGAACTACTAGTTGAAGAGCACCATAGCAACTATGGTGAACCTTGGGCCGGGGGAAGAGATGTGTTTGAGTTTCTTGCCGAAGCCAGTCAACTTAGACCAGACTCACAGGTGCTAGAGATAGGCTGTGGCACTCTTCGAGTTGGTTTGCATTTCATTCGATACTTGAATCCTGAACACTTCCATTGTCTTGAAAGAGATGAGCTCTCTTTGATGGCCGTATTTAGGTATGAGCTTCCTGCCCAAGGCCTCTTATACAAACGGCCTTCGATTGTTAAGGGGGATGACATGGATTTCAGCAGGTTTGATTCTGGCATAATGTATGATTTGATTTATGCTAGTGCTGTATTTCTTCACATGCCTGATAAACTCGTGTGGACTGGATTGGAAAGATTAGCATCTAAATTGAAACCTTATGATGGACGAATCTTTGTATCACATAATATAAAGTTCTGTTCAAGGTTGGGAGGAGAGGAATGCACAAAGAGGCTTGCAAGTTTGGGGCTTGAGTATCTTGGGAAGCATACTCATGATAGCTTGCTATTCAATCACTATGAGATATGGTTTGAATTTAGACGGTCAAAGGCATAATATCTGGATTGGTTCCATAAAGAGGCATCATAAACATCTCTAAATGTCCTCATGGAACTAAATGTGCTTTGCTCATCACAAGAAATCTGCAGCAATTCAATCATATCCTTGCTTTGAGTCCTAAGAGGTCGCATTTTTCTACTCAGTGGTTCATCTCGTGCCAGAAATCTGAATACACTTTTGACTCTTATAAAGAGAAAAGAACCATATGTAATTTTGATTGAGGACTCTACAAAGGCTGGGAGATTTGTATTATTTTTTGGGGTCTTTATGTAAAAGGGCTAGCTTAAAGTTTACATTTTCACACTGCTTCTATATAGATTCTGATATGATAGTTGTATTTAGCAGTCTTACTATCTTGCAACCGATTGCTGTTTTGACCATTATTACACTAGATGCTATCTAACATGTGCAATCATGTAACAATGTCTTACAGTGTTGTTTAGATGTTGTAACAAAAGTATTTTGCAGAATGTTCCAAAACATCCTCTCCATTAATTGAAATATATCAAATAAGTATTTTTTTGT >Glyma03g03300.5 sequence type=transcript gene model=Glyma03g03300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATCATTAATGATTTCACTCACGACCGGTACCACAAAACATGGGTTAACTTCTACCCCTGTTCATTGCTCCTCTTTCGTTCTTCTCTCTTTCTCTTTCAACGCATTCCAACCCTGTGGCGCTATACCCTCCTAGATCTACTCTCTAACCGACTTTCATGATCTATGCTCAATGTCTCGGATGTGTTGGATTTGGATTGAAGTAGCCGTTGATAATGCAATTCATGCGTGTAGTTTTAGCCATTGCATCAATTATCCAACTGGGGTTGTGTAAAGTTGCTGAATTTCATGATTCATATACACCATACATGGAATTTTCAATTGGGTTTTTGATTTAGCTCTATTCTGTTTTCTATGCATCATATGTTACTTAGCTAAAGTAAATGCATAAACTTTGTTGCCATTCAGTTGGGATTTCAATTTATTATGCTGTGGTGCGATTAGTATTTAGGTAATTGTAACAAATTGAGCATTGTTTGAGCAATGTCATGTTTGCTTAGTTTTGATTTGCCTGCTAGCTTCACAGGCTGGGACTAAGAGCAGTGGTTAGTCATACATGGCACTCTTGGCTTCGCGAGCAATGTCGAAGGGTGTGGTGGTATCAGTGCCTGTTCTTGTTCTATCTGCTTTAGTGGCCACTGTTTTCCTGTTCTTCCTTTTGTCCTCTCTTTCATCCTGCTCCTGCCCTACTCCTTCAGAAATATCTGCCTCCAATGCTAGGAGTGTTGGTGTTGGCATTGGTGTTTCTGAGTCTAGCAGCAGTAATGTTCCGGTAGCAACAACGAAGGAGTCTAGCAGCGGTTATATTCCGTTATCAACGAGGAAGGAGGATGTTGAGTGGGTGAAGGATCAAATCCGAGCAAATGGGCTTCAAATGCATGACAATGTGCTTCGCAAGGGTATTAATCCCCGCACTCGGGCTCAGCAACTTGAGGATTTTAGACGATTTAAGGGCATATCTCACTATGAGGGACCTGATTCAGATAATCACACATCCTTGCCATGCCCTGGGGAACTACTAGTTGAAGAGCACCATAGCAACTATGGTGAACCTTGGGCCGGGGGAAGAGATGTGTTTGAGTTTCTTGCCGAAGCCAGTCAACTTAGACCAGACTCACAGGTGCTAGAGATAGGCTGTGGCACTCTTCGAGTTGGTTTGCATTTCATTCGATACTTGAATCCTGAACACTTCCATTGTCTTGAAAGAGATGAGCTCTCTTTGATGGCCGTATTTAGGTATGAGCTTCCTGCCCAAGGCCTCTTATACAAACGGCCTTCGATTGTTAAGGGGGATGACATGGATTTCAGCAGGTTTGATTCTGGCATAATGTATGATTTGATTTATGCTAGTGCTGTATTTCTTCACATGCCTGATAAACTCGTGTGGACTGGATTGGAAAGATTAGCATCTAAATTGAAACCTTATGATGGACGAATCTTTGTATCACATAATATAAAGTTCTGTTCAAGGTTGGGAGGAGAGGAATGCACAAAGAGGCTTGCAAGTTTGGGGCTTGAGTATCTTGGGAAGCATACTCATGATAGCTTGCTATTCAATCACTATGAGATATGGTTTGAATTTAGACGGTCAAAGGCATAATATCTGGATTGGTTCCATAAAGAGGCATCATAAACATCTCTAAATGTCCTCATGGAACTAAATGTGCTTTGCTCATCACAAGAAATCTGCAGCAATTCAATCATATCCTTGCTTTGAGTCCTAAGAGGTCGCATTTTTCTACTCAGTGGTTCATCTCGTGCCAGAAATCTGAATACACTTTTGACTCTTATAAAGAGAAAAGAACCATATGTAATTTTGATTGAGGACTCTACAAAGGCTGGGAGATTTGTATTATTTTTTGGGGTCTTTATGTAAAAGGGCTAGCTTAAAGTTTACATTTTCACACTGCTTCTATATAGATTCTGATATGATAGTTGTATTTAGCAGTCTTACTATCTTGCAACCGATTGCTGTTTTGACCATTATTACACTAGATGCTATCTAACATGTGCAATCATGTAACAATGTCTTACAGTGTTGTTTAGATGTTGTAACAAAAGTATTTTGCAGAATGTTCCAAAACATCCTCTCCATTAATTGAAATATATCAAATAAGTATTTTTTTGT
>Glyma03g03300.3 sequence type=CDS gene model=Glyma03g03300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACTCTTGGCTTCGCGAGCAATGTCGAAGGGTGTGGTGGTATCAGTGCCTGTTCTTGTTCTATCTGCTTTAGTGGCCACTGTTTTCCTGTTCTTCCTTTTGTCCTCTCTTTCATCCTGCTCCTGCCCTACTCCTTCAGAAATATCTGCCTCCAATGCTAGGAGTGTTGGTGTTGGCATTGGTGTTTCTGAGTCTAGCAGCAGTAATGTTCCGGTAGCAACAACGAAGGAGTCTAGCAGCGGTTATATTCCGTTATCAACGAGGAAGGAGGATGTTGAGTGGGTGAAGGATCAAATCCGAGCAAATGGGCTTCAAATGCATGACAATGTGCTTCGCAAGGGTATTAATCCCCGCACTCGGGCTCAGCAACTTGAGGATTTTAGACGATTTAAGGGCATATCTCACTATGAGGGACCTGATTCAGATAATCACACATCCTTGCCATGCCCTGGGGAACTACTAGTTGAAGAGCACCATAGCAACTATGGTGAACCTTGGGCCGGGGGAAGAGATGTGTTTGAGTTTCTTGCCGAAGCCAGTCAACTTAGACCAGACTCACAGGTGCTAGAGATAGGCTGTGGCACTCTTCGAGTTGGTTTGCATTTCATTCGATACTTGAATCCTGAACACTTCCATTGTCTTGAAAGAGATGAGCTCTCTTTGATGGCCGTATTTAGGTATGAGCTTCCTGCCCAAGGCCTCTTATACAAACGGCCTTCGATTGTTAAGGGGGATGACATGGATTTCAGCAGGTTTGATTCTGGCATAATGTATGATTTGATTTATGCTAGTGCTGTATTTCTTCACATGCCTGATAAACTCGTGTGGACTGGATTGGAAAGATTAGCATCTAAATTGAAACCTTATGATGGACGAATCTTTGTATCACATAATATAAAGTTCTGTTCAAGGTTGGGAGGAGAGGAATGCACAAAGAGGCTTGCAAGTTTGGGGCTTGAGTATCTTGGGAAGCATACTCATGATAGCTTGCTATTCAATCACTATGAGATATGGTTTGAATTTAGACGGTCAAAGGCATAA >Glyma03g03300.4 sequence type=CDS gene model=Glyma03g03300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACTCTTGGCTTCGCGAGCAATGTCGAAGGGTGTGGTGGTATCAGTGCCTGTTCTTGTTCTATCTGCTTTAGTGGCCACTGTTTTCCTGTTCTTCCTTTTGTCCTCTCTTTCATCCTGCTCCTGCCCTACTCCTTCAGAAATATCTGCCTCCAATGCTAGGAGTGTTGGTGTTGGCATTGGTGTTTCTGAGTCTAGCAGCAGTAATGTTCCGGTAGCAACAACGAAGGAGTCTAGCAGCGGTTATATTCCGTTATCAACGAGGAAGGAGGATGTTGAGTGGGTGAAGGATCAAATCCGAGCAAATGGGCTTCAAATGCATGACAATGTGCTTCGCAAGGGTATTAATCCCCGCACTCGGGCTCAGCAACTTGAGGATTTTAGACGATTTAAGGGCATATCTCACTATGAGGGACCTGATTCAGATAATCACACATCCTTGCCATGCCCTGGGGAACTACTAGTTGAAGAGCACCATAGCAACTATGGTGAACCTTGGGCCGGGGGAAGAGATGTGTTTGAGTTTCTTGCCGAAGCCAGTCAACTTAGACCAGACTCACAGGTGCTAGAGATAGGCTGTGGCACTCTTCGAGTTGGTTTGCATTTCATTCGATACTTGAATCCTGAACACTTCCATTGTCTTGAAAGAGATGAGCTCTCTTTGATGGCCGTATTTAGGTATGAGCTTCCTGCCCAAGGCCTCTTATACAAACGGCCTTCGATTGTTAAGGGGGATGACATGGATTTCAGCAGGTTTGATTCTGGCATAATGTATGATTTGATTTATGCTAGTGCTGTATTTCTTCACATGCCTGATAAACTCGTGTGGACTGGATTGGAAAGATTAGCATCTAAATTGAAACCTTATGATGGACGAATCTTTGTATCACATAATATAAAGTTCTGTTCAAGGTTGGGAGGAGAGGAATGCACAAAGAGGCTTGCAAGTTTGGGGCTTGAGTATCTTGGGAAGCATACTCATGATAGCTTGCTATTCAATCACTATGAGATATGGTTTGAATTTAGACGGTCAAAGGCATAA >Glyma03g03300.5 sequence type=CDS gene model=Glyma03g03300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACTCTTGGCTTCGCGAGCAATGTCGAAGGGTGTGGTGGTATCAGTGCCTGTTCTTGTTCTATCTGCTTTAGTGGCCACTGTTTTCCTGTTCTTCCTTTTGTCCTCTCTTTCATCCTGCTCCTGCCCTACTCCTTCAGAAATATCTGCCTCCAATGCTAGGAGTGTTGGTGTTGGCATTGGTGTTTCTGAGTCTAGCAGCAGTAATGTTCCGGTAGCAACAACGAAGGAGTCTAGCAGCGGTTATATTCCGTTATCAACGAGGAAGGAGGATGTTGAGTGGGTGAAGGATCAAATCCGAGCAAATGGGCTTCAAATGCATGACAATGTGCTTCGCAAGGGTATTAATCCCCGCACTCGGGCTCAGCAACTTGAGGATTTTAGACGATTTAAGGGCATATCTCACTATGAGGGACCTGATTCAGATAATCACACATCCTTGCCATGCCCTGGGGAACTACTAGTTGAAGAGCACCATAGCAACTATGGTGAACCTTGGGCCGGGGGAAGAGATGTGTTTGAGTTTCTTGCCGAAGCCAGTCAACTTAGACCAGACTCACAGGTGCTAGAGATAGGCTGTGGCACTCTTCGAGTTGGTTTGCATTTCATTCGATACTTGAATCCTGAACACTTCCATTGTCTTGAAAGAGATGAGCTCTCTTTGATGGCCGTATTTAGGTATGAGCTTCCTGCCCAAGGCCTCTTATACAAACGGCCTTCGATTGTTAAGGGGGATGACATGGATTTCAGCAGGTTTGATTCTGGCATAATGTATGATTTGATTTATGCTAGTGCTGTATTTCTTCACATGCCTGATAAACTCGTGTGGACTGGATTGGAAAGATTAGCATCTAAATTGAAACCTTATGATGGACGAATCTTTGTATCACATAATATAAAGTTCTGTTCAAGGTTGGGAGGAGAGGAATGCACAAAGAGGCTTGCAAGTTTGGGGCTTGAGTATCTTGGGAAGCATACTCATGATAGCTTGCTATTCAATCACTATGAGATATGGTTTGAATTTAGACGGTCAAAGGCATAA
>Glyma03g03300.3 sequence type=predicted peptide gene model=Glyma03g03300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALLASRAMSKGVVVSVPVLVLSALVATVFLFFLLSSLSSCSCPTPSEISASNARSVGVGIGVSESSSSNVPVATTKESSSGYIPLSTRKEDVEWVKDQIRANGLQMHDNVLRKGINPRTRAQQLEDFRRFKGISHYEGPDSDNHTSLPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASQLRPDSQVLEIGCGTLRVGLHFIRYLNPEHFHCLERDELSLMAVFRYELPAQGLLYKRPSIVKGDDMDFSRFDSGIMYDLIYASAVFLHMPDKLVWTGLERLASKLKPYDGRIFVSHNIKFCSRLGGEECTKRLASLGLEYLGKHTHDSLLFNHYEIWFEFRRSKA* >Glyma03g03300.4 sequence type=predicted peptide gene model=Glyma03g03300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALLASRAMSKGVVVSVPVLVLSALVATVFLFFLLSSLSSCSCPTPSEISASNARSVGVGIGVSESSSSNVPVATTKESSSGYIPLSTRKEDVEWVKDQIRANGLQMHDNVLRKGINPRTRAQQLEDFRRFKGISHYEGPDSDNHTSLPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASQLRPDSQVLEIGCGTLRVGLHFIRYLNPEHFHCLERDELSLMAVFRYELPAQGLLYKRPSIVKGDDMDFSRFDSGIMYDLIYASAVFLHMPDKLVWTGLERLASKLKPYDGRIFVSHNIKFCSRLGGEECTKRLASLGLEYLGKHTHDSLLFNHYEIWFEFRRSKA* >Glyma03g03300.5 sequence type=predicted peptide gene model=Glyma03g03300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALLASRAMSKGVVVSVPVLVLSALVATVFLFFLLSSLSSCSCPTPSEISASNARSVGVGIGVSESSSSNVPVATTKESSSGYIPLSTRKEDVEWVKDQIRANGLQMHDNVLRKGINPRTRAQQLEDFRRFKGISHYEGPDSDNHTSLPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASQLRPDSQVLEIGCGTLRVGLHFIRYLNPEHFHCLERDELSLMAVFRYELPAQGLLYKRPSIVKGDDMDFSRFDSGIMYDLIYASAVFLHMPDKLVWTGLERLASKLKPYDGRIFVSHNIKFCSRLGGEECTKRLASLGLEYLGKHTHDSLLFNHYEIWFEFRRSKA*
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