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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G13440 | AT | Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:4378338-4379347 FORWARD LENGTH=278 | SoyBase | E_val: 1.00E-118 | ISS |
| GO:0015946 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methanol oxidation | SoyBase | N/A | ISS |
| GO:0019415 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acetate biosynthetic process from carbon monoxide | SoyBase | N/A | ISS |
| GO:0032259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| KOG3191 | KOG | Predicted N6-DNA-methyltransferase | JGI | ISS | |
| PTHR18895 | Panther | METHYLTRANSFERASE | JGI | ISS | |
| PTHR18895:SF8 | Panther | gb def: putative methylase [streptomyces coelicolor a3(2)] | JGI | ISS | |
| PF05175 | PFAM | Methyltransferase small domain | JGI | ISS | |
| UniRef100_I1JKQ0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JKQ0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2HS71 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SAM (And some other nucleotide) binding motif; Methyltransferase small; Tetratricopeptide-like helical n=1 Tax=Medicago truncatula RepID=Q2HS71_MEDTR | SoyBase | E_val: 3.00E-142 | ISS |
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Glyma03g03223 not represented in the dataset |
Glyma03g03223 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g027700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g03223.2 sequence type=transcript gene model=Glyma03g03223 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTTCATACAAAATGCAACTTGAGAAATAACCAGAGCAGAGAGTAGCCATCCGTGCCGTTATGCGAAAACCCCAAACCTTCCTTTAATCAGACCTCAGATTAAAATCACACTTTCATCTTCTTCACTAACGATAATGAAGATTGGTTGAGTAGTAGTGAACTGAAGAAAAATTGGAAAAATTCTTTAGGGGTCAAAGTCTTGAGATTTTAGAAGACACGCACGCTTCATTGTGTTGGCTCACTTGAAATTAGTCCAAGATTTGAGGCTCAAAAAGAGTGGAGGAGGCGTTGGAAGGAAGCTGATATTGTGAATTTTGTCTTGACATTGACCAGAGCAATTCAGAGCTGGAGTCAAAAAAGGCCATCAGTATATCACGGTCAAAGTGAACAATATGGGTTCGCACAAAGAGTTGCCTAGAACTGCCCAAATTCACCTTGTGAGTTCGCACCAAGAGGTTTATGAACCATGTGATGATTCTTTTGCACTGGTTGATGCTCTTCTAGCTGACCGCAATAACCTGTTGGAACATCGTCCAACATTGTGCATGGAGATAGGCTGTGGTAGCGGATATGTCATTACTTCCCTTGCTCTTCTCCTTGGGCAGGAAGGTTGTGGCATCAACTACATTGCAACTGATATCAACCCTCATGCAGTGAGGGTAACCCATGAGACCTTGGAAGCACATGGTGTTGGTGCTGAGTTGATAGTAACAGATATTGCATCGGGGCTAGAGGACCGGCTTGCTGGGTTGGTTGATGTTATAGTTGTGAACCCTCCTTACGTGCCTACCCCTGAAGATGAAGTGGGTGTTGAAGGTATTATGTCATCTTGGGCCGGTGGGGAGAACGGCCGGAGTGTAATTGATAAAATTTTGCCCGTTGCAGACCGTCTTTTGTCTGAAAAGGGATGGCTATACATGGTCACCCTTACAGCTAACAATCCTTCTGAGATATGCCATCAAATGAGAAAGAAAGGGTATGCTTCTAAGATTGTTGTCCAAAGATCCACAGAGGAAGAAAGTCTTCATATCATCAAGTTCTGGCGGGATTTCGATACTGAAGCAAATGAAACTGACCAATCTGCTTCTGGGTTCATAAGCTTCATGCTTACACAAATCCCTCTACTTTCATATTGGAGAGGCACCAATAGCAACAATAAGAGCTGAACGAAAAAGTAATTGATTTCCTGATACTGGGATGTCTTTCTTATCTTGACCACCTGAATGTTTTGCTTTGCCCTAGCTTATAAATATAACAACCAATTCTTTCCTTGTTAGCTGGGCAGCTTTATGGATCATTTGACGCCATTAAACTTTATGAAAAACTCAATATTCAATAATAATTTTCTCTTATCTTTATCCTGCTT >Glyma03g03223.3 sequence type=transcript gene model=Glyma03g03223 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATACAAAATGCAACTTGAGAAATAACCAGAGCAGAGAGTAGCCATCCGTGCCGTTATGCGAAAACCCCAAACCTTCCTTTAATCAGACCTCAGATTAAAATCACACTTTCATCTTCTTCACTAACGATAATGGTAACCATTGGTTGAGTAGTAGTGAACTGAAGAAAAATTGGAAAAATTCTTTAGGGGTCAAAGTCTTGAGATTTTAGAAGACACGCACGCTTCATTGTGTTGGCTCACTTGAAATTAGTCCAAGATTTGAGGCTCAAAAAGAGTGGAGGAGGCGTTGGAAGGAAGCTGATATTGTGAATTTTGTCTTGACATTGACCAGAGCAATTCAGAGCTGGAGTCAAAAAAGGCCATCAGTATATCACGGTCAAAGTGAACAATATGGGTTCGCACAAAGAGTTGCCTAGAACTGCCCAAATTCACCTTGTGAGTTCGCACCAAGAGGTTTATGAACCATGTGATGATTCTTTTGCACTGGTTGATGCTCTTCTAGCTGACCGCAATAACCTGTTGGAACATCGTCCAACATTGTGCATGGAGATAGGCTGTGGTAGCGGATATGTCATTACTTCCCTTGCTCTTCTCCTTGGGCAGGAAGGTTGTGGCATCAACTACATTGCAACTGATATCAACCCTCATGCAGTGAGGGTAACCCATGAGACCTTGGAAGCACATGGTGTTGGTGCTGAGTTGATAGTAACAGATATTGCATCGGGGCTAGAGGACCGGCTTGCTGGGTTGGTTGATGTTATAGTTGTGAACCCTCCTTACGTGCCTACCCCTGAAGATGAAGTGGGTGTTGAAGGTATTATGTCATCTTGGGCCGGTGGGGAGAACGGCCGGAGTGTAATTGATAAAATTTTGCCCGTTGCAGACCGTCTTTTGTCTGAAAAGGGATGGCTATACATGGTCACCCTTACAGCTAACAATCCTTCTGAGATATGCCATCAAATGAGAAAGAAAGGGTATGCTTCTAAGATTGTTGTCCAAAGATCCACAGAGGAAGAAAGTCTTCATATCATCAAGTTCTGGCGGGATTTCGATACTGAAGCAAATGAAACTGACCAATCTGCTTCTGGGTTCATAAGCTTCATGCTTACACAAATCCCTCTACTTTCATATTGGAGAGGCACCAATAGCAACAATAAGAGCTGA
>Glyma03g03223.1 sequence type=CDS gene model=Glyma03g03223 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCGCACAAAGAGTTGCCTAGAACTGCCCAAATTCACCTTGTGAGTTCGCACCAAGAGGTTTATGAACCATGTGATGATTCTTTTGCACTGGTTGATGCTCTTCTAGCTGACCGCAATAACCTGTTGGAACATCGTCCAACATTGTGCATGGAGATAGGCTGTGGTAGCGGATATGTCATTACTTCCCTTGCTCTTCTCCTTGGGCAGGAAGGTTGTGGCATCAACTACATTGCAACTGATATCAACCCTCATGCAGTGAGGGTAACCCATGAGACCTTGGAAGCACATGGTGTTGGTGCTGAGTTGATAGTAACAGATATTGCATCGGGGCTAGAGGACCGGCTTGCTGGGTTGGTTGATGTTATAGTTGTGAACCCTCCTTACGTGCCTACCCCTGAAGATGAAGTGGGTGTTGAAGGTATTATGTCATCTTGGGCCGGTGGGGAGAACGGCCGGAGTGTAATTGATAAAATTTTGCCCGTTGCAGACCGTCTTTTGTCTGAAAAGGGATGGCTATACATGGTCACCCTTACAGCTAACAATCCTTCTGAGATATGCCATCAAATGAGAAAGAAAGGGTATGCTTCTAAGATTGTTGTCCAAAGATCCACAGAGGAAGAAAGTCTTCATATCATCAAGTTCTGGCGGGATTTCGATACTGAAGCAAATGAAACTGACCAATCTGCTTCTGGGTTCATAAGCTTCATGCTTACACAAATCCCTCTACTTTCATATTGGAGAGGCACCAATAGCAACAATAAGAGCTGA >Glyma03g03223.2 sequence type=CDS gene model=Glyma03g03223 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCGCACAAAGAGTTGCCTAGAACTGCCCAAATTCACCTTGTGAGTTCGCACCAAGAGGTTTATGAACCATGTGATGATTCTTTTGCACTGGTTGATGCTCTTCTAGCTGACCGCAATAACCTGTTGGAACATCGTCCAACATTGTGCATGGAGATAGGCTGTGGTAGCGGATATGTCATTACTTCCCTTGCTCTTCTCCTTGGGCAGGAAGGTTGTGGCATCAACTACATTGCAACTGATATCAACCCTCATGCAGTGAGGGTAACCCATGAGACCTTGGAAGCACATGGTGTTGGTGCTGAGTTGATAGTAACAGATATTGCATCGGGGCTAGAGGACCGGCTTGCTGGGTTGGTTGATGTTATAGTTGTGAACCCTCCTTACGTGCCTACCCCTGAAGATGAAGTGGGTGTTGAAGGTATTATGTCATCTTGGGCCGGTGGGGAGAACGGCCGGAGTGTAATTGATAAAATTTTGCCCGTTGCAGACCGTCTTTTGTCTGAAAAGGGATGGCTATACATGGTCACCCTTACAGCTAACAATCCTTCTGAGATATGCCATCAAATGAGAAAGAAAGGGTATGCTTCTAAGATTGTTGTCCAAAGATCCACAGAGGAAGAAAGTCTTCATATCATCAAGTTCTGGCGGGATTTCGATACTGAAGCAAATGAAACTGACCAATCTGCTTCTGGGTTCATAAGCTTCATGCTTACACAAATCCCTCTACTTTCATATTGGAGAGGCACCAATAGCAACAATAAGAGCTGA >Glyma03g03223.3 sequence type=CDS gene model=Glyma03g03223 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCGCACAAAGAGTTGCCTAGAACTGCCCAAATTCACCTTGTGAGTTCGCACCAAGAGGTTTATGAACCATGTGATGATTCTTTTGCACTGGTTGATGCTCTTCTAGCTGACCGCAATAACCTGTTGGAACATCGTCCAACATTGTGCATGGAGATAGGCTGTGGTAGCGGATATGTCATTACTTCCCTTGCTCTTCTCCTTGGGCAGGAAGGTTGTGGCATCAACTACATTGCAACTGATATCAACCCTCATGCAGTGAGGGTAACCCATGAGACCTTGGAAGCACATGGTGTTGGTGCTGAGTTGATAGTAACAGATATTGCATCGGGGCTAGAGGACCGGCTTGCTGGGTTGGTTGATGTTATAGTTGTGAACCCTCCTTACGTGCCTACCCCTGAAGATGAAGTGGGTGTTGAAGGTATTATGTCATCTTGGGCCGGTGGGGAGAACGGCCGGAGTGTAATTGATAAAATTTTGCCCGTTGCAGACCGTCTTTTGTCTGAAAAGGGATGGCTATACATGGTCACCCTTACAGCTAACAATCCTTCTGAGATATGCCATCAAATGAGAAAGAAAGGGTATGCTTCTAAGATTGTTGTCCAAAGATCCACAGAGGAAGAAAGTCTTCATATCATCAAGTTCTGGCGGGATTTCGATACTGAAGCAAATGAAACTGACCAATCTGCTTCTGGGTTCATAAGCTTCATGCTTACACAAATCCCTCTACTTTCATATTGGAGAGGCACCAATAGCAACAATAAGAGCTGA
>Glyma03g03223.1 sequence type=predicted peptide gene model=Glyma03g03223 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSHKELPRTAQIHLVSSHQEVYEPCDDSFALVDALLADRNNLLEHRPTLCMEIGCGSGYVITSLALLLGQEGCGINYIATDINPHAVRVTHETLEAHGVGAELIVTDIASGLEDRLAGLVDVIVVNPPYVPTPEDEVGVEGIMSSWAGGENGRSVIDKILPVADRLLSEKGWLYMVTLTANNPSEICHQMRKKGYASKIVVQRSTEEESLHIIKFWRDFDTEANETDQSASGFISFMLTQIPLLSYWRGTNSNNKS* >Glyma03g03223.2 sequence type=predicted peptide gene model=Glyma03g03223 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSHKELPRTAQIHLVSSHQEVYEPCDDSFALVDALLADRNNLLEHRPTLCMEIGCGSGYVITSLALLLGQEGCGINYIATDINPHAVRVTHETLEAHGVGAELIVTDIASGLEDRLAGLVDVIVVNPPYVPTPEDEVGVEGIMSSWAGGENGRSVIDKILPVADRLLSEKGWLYMVTLTANNPSEICHQMRKKGYASKIVVQRSTEEESLHIIKFWRDFDTEANETDQSASGFISFMLTQIPLLSYWRGTNSNNKS* >Glyma03g03223.3 sequence type=predicted peptide gene model=Glyma03g03223 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSHKELPRTAQIHLVSSHQEVYEPCDDSFALVDALLADRNNLLEHRPTLCMEIGCGSGYVITSLALLLGQEGCGINYIATDINPHAVRVTHETLEAHGVGAELIVTDIASGLEDRLAGLVDVIVVNPPYVPTPEDEVGVEGIMSSWAGGENGRSVIDKILPVADRLLSEKGWLYMVTLTANNPSEICHQMRKKGYASKIVVQRSTEEESLHIIKFWRDFDTEANETDQSASGFISFMLTQIPLLSYWRGTNSNNKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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