SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45280 | AT | Annotation by Michelle Graham. TAIR10: RAS associated with diabetes protein 51C | chr2:18670103-18672041 FORWARD LENGTH=363 | SoyBase | E_val: 2.00E-164 | ISS |
| GO:0000724 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0007140 | GO-bp | Annotation by Michelle Graham. GO Biological Process: male meiosis | SoyBase | N/A | ISS |
| GO:0007143 | GO-bp | Annotation by Michelle Graham. GO Biological Process: female meiosis | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0010212 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ionizing radiation | SoyBase | N/A | ISS |
| GO:0016444 | GO-bp | Annotation by Michelle Graham. GO Biological Process: somatic cell DNA recombination | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045003 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via synthesis-dependent strand annealing | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0000150 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: recombinase activity | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003684 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding | SoyBase | N/A | ISS |
| GO:0003697 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: single-stranded DNA binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008094 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity | SoyBase | N/A | ISS |
| KOG1434 | KOG | Meiotic recombination protein Dmc1 | JGI | ISS | |
| PTHR22942 | Panther | RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER | JGI | ISS | |
| PTHR22942:SF14 | Panther | DNA REPAIR PROTEIN RAD51 HOMOLOG 3, R51H3 | JGI | ISS | |
| PF08423 | PFAM | Rad51 | JGI | ISS | |
| UniRef100_G7JS17 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA repair protein RAD51-like protein n=1 Tax=Medicago truncatula RepID=G7JS17_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JKP9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JKP9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g03210 not represented in the dataset |
Glyma03g03210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g027600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g03210.2 sequence type=CDS gene model=Glyma03g03210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGTGGGTATGCTTCCAATCTCAGCTTCAAAGAGAGGAAAACTCTTGGCTGCTGGTTACACCACTCTCGATGCCATTGCTCGTGCCTCCCCCACCCACCTTGCTCGAGATATTGATGTTTCTGAGAGTGAAGCCACGGAAATTCTGAATCTTGCAAGCAAACCTAGTGCTTTGGAGAGACCGAATGGGTCTCACACTGCTGTTGTTGGTGGTGGTCAGACTGCCTGGGATATGCTCAATGATGAAAAGTTTTCTTCTTACATTACCACATCTTGTGCAGATCTGGATAACATCCTTGGTGGAGGAATTAAGTGCAAAGAAGTCACTGAAATAGGTGGAGTTCCAGGCATTGGTAAAACACAAATTGGGATTCAACTTGCGGTAAATGTTCAGATTCCACAAGAATATGGTGGCCTAGGAGGGAAGGCAATATACATCGCTTTATGGTTGAACCGTGTTCTACAAATTGCTGAAGCATGCAAAGAAGATATGGCAGAATACAGCCGGCACTTTCATAAGGATTTTCAAGCTTGTGATGTTAAAATGCACCCTAATAATATCTTGGAAAATATATTCTATTTTCGTGTTTGCAGCTACACTGAGCAAATTGCTTTGATAAATTACTTGGACAAATTCATCACAGAGAATAAAGATGTAAAGATCCTCATTGTTGACAGTGTTACTTTCCACTTCCGCCAAGACTTTGATGATATGGCTCTCAGGACTCGATTACTCAGTGAAATGGCTTTGAAGTTGATGAAGCTTGCAAAAAAATTCCGTTTGGCTGTTGTTATGTTCAATCAAGTAACAACCAAGCATATTGAAGGTTCATTTCAATTGACCCTTGCACTAGGAGATAGTTGGTCGCATTCATGCACAAATAGGATAATCTTGTTTTGGAATGGCAACGAACGACACGCATTTATCGACAAGTCCCCTTCTCTGAAATCAGCATCAGCTCCATATTCTGTGACAACTAGAGGGATACGCAATTCTACTTCAAGCTGCAAACGAATCAAGATGATGTGA
>Glyma03g03210.2 sequence type=predicted peptide gene model=Glyma03g03210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEVGMLPISASKRGKLLAAGYTTLDAIARASPTHLARDIDVSESEATEILNLASKPSALERPNGSHTAVVGGGQTAWDMLNDEKFSSYITTSCADLDNILGGGIKCKEVTEIGGVPGIGKTQIGIQLAVNVQIPQEYGGLGGKAIYIALWLNRVLQIAEACKEDMAEYSRHFHKDFQACDVKMHPNNILENIFYFRVCSYTEQIALINYLDKFITENKDVKILIVDSVTFHFRQDFDDMALRTRLLSEMALKLMKLAKKFRLAVVMFNQVTTKHIEGSFQLTLALGDSWSHSCTNRIILFWNGNERHAFIDKSPSLKSASAPYSVTTRGIRNSTSSCKRIKMM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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