Glyma03g02930 - SoyBase

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Report for Sequence Feature Glyma03g02930

Feature Type:	gene_model
Chromosome:	Gm03
Start:	2745002
stop:	2749522
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g02930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G60800	AT	Annotation by Michelle Graham. TAIR10: DHHC-type zinc finger family protein \| chr3:22467486-22469273 REVERSE LENGTH=307	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1315	KOG	Predicted DHHC-type Zn-finger protein	JGI		ISS
PTHR22883	Panther	ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN	JGI		ISS
PF01529	PFAM	DHHC zinc finger domain	JGI		ISS
UniRef100_G7JDF8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Palmitoyltransferase pfa3 n=1 Tax=Medicago truncatula RepID=G7JDF8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JKN0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JKN0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g02930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g02930

Paralog	Evidence	Comments
Glyma01g34270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g02930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g025500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g02930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g02930

Limit To All Plant Sequences

>Glyma03g02930.2   sequence type=transcript   gene model=Glyma03g02930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAAAAAAAAAAAAAAAAAATTTAAAAGATAAAAAAATAAAACCAACATTTTCATCCCTCTCGGTGCTGTGTTTAGCTTCCTTCTTCTTCTTCCTCTTTCTTCTTCTTCTGCTGCACCCACAAATCAAAACCCCCCTTTTCCAACCCAATTTTTCTCCATAAACCCTAGATTCAACGAACCCGCCGACCAAGCTCGAACCTCACGTCGCAAAAAAACACTTCTTTTCCCCTCTCCGAGGTTGTCGTGTCGGAGCATAGCCATGTTGTTCCCTCGAGGAAATTGATGATTTTTCATAACATTGGGGTCTCGTTTTGCTTGTGGGGTCACCTTGAAGGAGGGAAAAGTAACGAGCTTTGGGGCTGAATCGTGGTGGGTCTGTTGAGTATGCATAGATCTGGAGCTACGATGGCGTGGAACGTGTTCAAGTTCTGCACTGCTCTGCGTGGATTGGGCTCGATCATGATCCTGTTGGTTCTTGGCGTTGTTGGTGCCACTTACTATGCTGTTGTTTTGACCAATTATGGCCCTGCTTTGTATGCTGGAGGACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTGTTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGGAGTGTCCCTCCAAACTGGAAGCCTACAATTGATGAGGAAAGGGGAGAGGCTGATCCGTTGGTTGGGACAGAGTTTAGTAATCTGCCGTCTGATCCCAATCCACGGGTTCGGTACTGTCGGAAGTGCAATCAGCTCAAGCCGCCTCGATGCCATCATTGTTCAGTTTGTGGGCGCTGTGTTTTGAAGATGGACCACCATTGTGTGTGGGTAGTCAACTGTGTCGGGGCTCTAAATTACAAATATTTCCTTCTTTTCTTGTTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCTCATTTCATAGCATTCTTTAGTGATGGAGAAATTCCTGGAACACCTGGCTCTCTTGCTACAACTTTTCTTGCTTTCGTTTTAAACCTGGCCTTTGCACTGAGCGTCTTAGGATTTCTCATCATGCACATATCTTTGGTGGCTGCTAATACGACCACTATTGAGGCATATGAGAAGAAAACTACTCCAAAATGGCGTTATGACCTTGGTCGTCGAAAAAATTTTGAGCAGGTTTTTGGGATGGACAAGAAGTACTGGTTCATCCCTGCTTATTCAGACGAAGATATACGAAAGATGCCAGCTCTACAAGGTCTTGACTATCCTTCAAAACCTGACTTCGATTCCCAATAGTTCTAAAAGCTAATATATATCCACATCATGTAACAAAAGTCATGGAGACTCTCCACAACCCTCTACTTCACTCTCTAACACAATGTAGCGTGGAGCAATGGGGGGCAGGGTGGTGTGATGCTGGTTTGAGGGGCTAATGTGTTTATGTTCCCATAATGATAGGAACTGTTTTTTGTCAAGCAATGCAATTTTCTCACCTTTCCTTTTATTCAAATTGAGTGAAATAGCAATTTTTAGTGCTGGAATTTATTCTCTAGTTGGAGACCAGTCTTTGTGAATTTTATAGATGTCAATGAGTTTGTTACTGGAGCATCTCCAATGGGGGTTTCTTAAAGAGTTTCTTAACCCTATTGGAGCAAATCTATGTGCGGAAGAGTTTATTAAAAATAAGATTTGTAT

Coding sequences of Glyma03g02930

Limit To All Plant Sequences

>Glyma03g02930.1   sequence type=CDS   gene model=Glyma03g02930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATAGATCTGGAGCTACGATGGCGTGGAACGTGTTCAAGTTCTGCACTGCTCTGCGTGGATTGGGCTCGATCATGATCCTGTTGGTTCTTGGCGTTGTTGGTGCCACTTACTATGCTGTTGTTTTGACCAATTATGGCCCTGCTTTGTATGCTGGAGGACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTGTTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGGAGTGTCCCTCCAAACTGGAAGCCTACAATTGATGAGGAAAGGGGAGAGGCTGATCCGTTGGTTGGGACAGAGTTTAGTAATCTGCCGTCTGATCCCAATCCACGGGTTCGGTACTGTCGGAAGTGCAATCAGCTCAAGCCGCCTCGATGCCATCATTGTTCAGTTTGTGGGCGCTGTGTTTTGAAGATGGACCACCATTGTGTGTGGGTAGTCAACTGTGTCGGGGCTCTAAATTACAAATATTTCCTTCTTTTCTTGTTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCTCATTTCATAGCATTCTTTAGTGATGGAGAAATTCCTGGAACACCTGGCTCTCTTGCTACAACTTTTCTTGCTTTCGTTTTAAACCTGGCCTTTGCACTGAGCGTCTTAGGATTTCTCATCATGCACATATCTTTGGTGGCTGCTAATACGACCACTATTGAGGCATATGAGAAGAAAACTACTCCAAAATGGCGTTATGACCTTGGTCGTCGAAAAAATTTTGAGCAGGTTTTTGGGATGGACAAGAAGTACTGGTTCATCCCTGCTTATTCAGACGAAGATATACGAAAGATGCCAGCTCTACAAGGTCTTGACTATCCTTCAAAACCTGACTTCGATTCCCAATAG

>Glyma03g02930.2   sequence type=CDS   gene model=Glyma03g02930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATAGATCTGGAGCTACGATGGCGTGGAACGTGTTCAAGTTCTGCACTGCTCTGCGTGGATTGGGCTCGATCATGATCCTGTTGGTTCTTGGCGTTGTTGGTGCCACTTACTATGCTGTTGTTTTGACCAATTATGGCCCTGCTTTGTATGCTGGAGGACTTGATTCTCTTGTTGCCTTGGCAGTGTTGATCTTGTTTCATAGCTTGTTGGTTATGCTGTTGTGGAGTTACTTTTCTGTTGTTTTTACCGATCCGGGGAGTGTCCCTCCAAACTGGAAGCCTACAATTGATGAGGAAAGGGGAGAGGCTGATCCGTTGGTTGGGACAGAGTTTAGTAATCTGCCGTCTGATCCCAATCCACGGGTTCGGTACTGTCGGAAGTGCAATCAGCTCAAGCCGCCTCGATGCCATCATTGTTCAGTTTGTGGGCGCTGTGTTTTGAAGATGGACCACCATTGTGTGTGGGTAGTCAACTGTGTCGGGGCTCTAAATTACAAATATTTCCTTCTTTTCTTGTTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCTCATTTCATAGCATTCTTTAGTGATGGAGAAATTCCTGGAACACCTGGCTCTCTTGCTACAACTTTTCTTGCTTTCGTTTTAAACCTGGCCTTTGCACTGAGCGTCTTAGGATTTCTCATCATGCACATATCTTTGGTGGCTGCTAATACGACCACTATTGAGGCATATGAGAAGAAAACTACTCCAAAATGGCGTTATGACCTTGGTCGTCGAAAAAATTTTGAGCAGGTTTTTGGGATGGACAAGAAGTACTGGTTCATCCCTGCTTATTCAGACGAAGATATACGAAAGATGCCAGCTCTACAAGGTCTTGACTATCCTTCAAAACCTGACTTCGATTCCCAATAG

Predicted protein sequences of Glyma03g02930

Limit To All Plant Sequences

>Glyma03g02930.1   sequence type=predicted peptide   gene model=Glyma03g02930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHRSGATMAWNVFKFCTALRGLGSIMILLVLGVVGATYYAVVLTNYGPALYAGGLDSLVALAVLILFHSLLVMLLWSYFSVVFTDPGSVPPNWKPTIDEERGEADPLVGTEFSNLPSDPNPRVRYCRKCNQLKPPRCHHCSVCGRCVLKMDHHCVWVVNCVGALNYKYFLLFLFYTFLETTLVTASLLPHFIAFFSDGEIPGTPGSLATTFLAFVLNLAFALSVLGFLIMHISLVAANTTTIEAYEKKTTPKWRYDLGRRKNFEQVFGMDKKYWFIPAYSDEDIRKMPALQGLDYPSKPDFDSQ*

>Glyma03g02930.2   sequence type=predicted peptide   gene model=Glyma03g02930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHRSGATMAWNVFKFCTALRGLGSIMILLVLGVVGATYYAVVLTNYGPALYAGGLDSLVALAVLILFHSLLVMLLWSYFSVVFTDPGSVPPNWKPTIDEERGEADPLVGTEFSNLPSDPNPRVRYCRKCNQLKPPRCHHCSVCGRCVLKMDHHCVWVVNCVGALNYKYFLLFLFYTFLETTLVTASLLPHFIAFFSDGEIPGTPGSLATTFLAFVLNLAFALSVLGFLIMHISLVAANTTTIEAYEKKTTPKWRYDLGRRKNFEQVFGMDKKYWFIPAYSDEDIRKMPALQGLDYPSKPDFDSQ*

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