Report for Sequence Feature Glyma03g02740
Feature Type: gene_model
Chromosome: Gm03
Start: 2549135
stop: 2560849
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g02740
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G02010 AT
Annotation by Michelle Graham. TAIR10: secretory 1A | chr1:348046-352197 FORWARD LENGTH=673
SoyBase E_val: 0 ISS
GO:0006904 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis
SoyBase N/A ISS
GO:0009306 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein secretion
SoyBase N/A ISS
GO:0016192 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein transporter activity
SoyBase N/A ISS
KOG1300
KOG
Vesicle trafficking protein Sec1
JGI ISS
PTHR11679 Panther
VESICLE PROTEIN SORTING-ASSOCIATED
JGI ISS
PTHR11679:SF5 Panther
gb def: vacuolar sorting protein essential for vacuolar morphogenesis and function, vps3
JGI ISS
PF00995 PFAM
Sec1 family
JGI ISS
UniRef100_G7JDE5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: SNARE-interacting protein KEULE n=1 Tax=Medicago truncatula RepID=G7JDE5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI00023397B7 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023397B7 related cluster n=1 Tax=unknown RepID=UPI00023397B7
SoyBase E_val: 0 ISS
Expression Patterns of Glyma03g02740
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma03g02740
Paralog Evidence Comments
Glyma01g34340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g02740 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g024100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g02740
Coding sequences of Glyma03g02740
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g02740.1 sequence type=CDS gene model=Glyma03g02740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCGTTATCCGATTCTGAAACGCCGTACGGCGGTGGAACGGAGTACAAGCCTTTCCGCCATATCAGCCGCGATCGGTTATTAATTGAAATGCTTAGATCGGCAAAGTCACCTGATTCGAAAGCTTGGAAGGTGCTAATAATGGATAAAGTCACGGTGAAAGTTATGTCACATTCATGTAAAATGGCAGATATTACAGACCAAGAAATTTCCTTGGTGGAAGACCTATTCCGGAGAAGGCAACCATTACCATCTTTGGATGCTGTTTATTTCATGCAGCCTTCTAAAGAGAATGTGGTCATGTTCCTGTCTGATATGTCTGGAAGGGAGCCCCTGTATAAGAAAGCCTATGTATTTTTCAGTTCACCAATCCCAAAGGAACTTGTAAACCACATCAAGTGTGATACAAGTGTCTTACCCCGCATAGGTGCACTGAGAGAGATGAATTTGGAATATTTTCCAATAGATAGCCAGGGTTTTATCACTGATCAAGAAACAGCAATGGAAGAACTTTACGGCAATATTGAGAATACTCGCAGATTTAACACCTGCTTGAATAATATGGCTATTCGAATAGCTACAGTTTTTGCTTCATTGAAGGAGTTACCATGTGTGTGGTATCGTGCTGCAAAGGATAGCGACGAGTCTACAGCAACAGCAGTTCGTGAATTAGTTCCTACCAAGCTTGCTAATGCTGTTTGGGACATGGTTTCTAAATATAAATCTACCATTCCCGGTTTTCCACAAAATGAAACTTGTGATATGCTCATTGTTGACAGATCCGTAGACCAGATTGCACCTGTCATTCATGAATGGACCTATGATGCTATGTGCCATGATTTGTTGACTATGGATGGAGATAAATATATGCATGAGGTTCCCAGCAAAGTCGGGGGTCAACCTGAGATAAAGGAGGTTATTCTACAAGACCATGATTCTGTCTGGCTTGAACTACGCCACACTCATATAGCAGATGCTAGTGAAAGACTGCATGAAAAGTTTACCAATTTCGTATCAAAGAACAAAGCAGCACAAATTCAACAAAGCGGAAGAGATGGTAGTGAACTATCTACACGAGATTTGCAAAAAATGGTTCAAGCTTTGCCCCAATACACTGAACAAGTGGAAAAGATCTCACTCCATGTAGAGATAGCTGGAAAGATCAACAAAATTATCAGAGAAACAGACCTTCGAGAGCTTGGACAGTTGGAACAAGATCTTGTTTTTGGGGATGCTGGAGCCAAGGAAGTTATTAATTTTTTAAGAACAAAGCAGAATACGACTCCTGAATATAAGTTGCGTTTGTTGATGATTTATGCATCTGTCTATCCTGAAAAGTTTGAGGGTGATAAAGCTTCAAAACTAATGCAGTTGGCAAAACTATCACCTGATGACATGAAAGTTATCAGTAATATGCAACAGCTGGCGGGATCATCAAACAAGAAATCATCTGCTGCTGGTGGTTTCTCACTCAAGTTCAGTAACCAGAAGACAAAGCAAGCAGCGCGCAAAGATCGTACTGAAGAGGAAGAAACATGGCAATTATTTCGATTTTATCCCATGTTAGAGGAGCTCATTGAAAATCTAAGTAAGGGAGAATTGGCAAAGAATGAATATTCCTGTATAAATGAGCCAAATCCTAGTAATGCACGAGGTTCAGTTAGAATCAGCAAACAGACCCAGACACCTCCAACTACTGCTCCTCATTCAATGAGATCTAGGAGGACTGCAAACTGGGGACGAGCTCGTACTTCGGATGATGGATATTCAAGTGACTCCACATTGAAGAATGTGACTACTGATTTCAAAAGGATGGGAAAGCGAATCTTTGTGTTTATCATTGGTGGGGCTACTCGATCAGAGCTGCGAGTTTGTCACAAGTTGACACCAAAATTAAAAAGGGAAGTAATCCTAGGTACTACTTCCATGGACGATCCTCCACAATATCTTACGAAATTAAAGTTATTGTTCGACAACAATGTTTCACAGCTGAATGGCCTCGGGATATAA
Predicted protein sequences of Glyma03g02740
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g02740.1 sequence type=predicted peptide gene model=Glyma03g02740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSLSDSETPYGGGTEYKPFRHISRDRLLIEMLRSAKSPDSKAWKVLIMDKVTVKVMSHSCKMADITDQEISLVEDLFRRRQPLPSLDAVYFMQPSKENVVMFLSDMSGREPLYKKAYVFFSSPIPKELVNHIKCDTSVLPRIGALREMNLEYFPIDSQGFITDQETAMEELYGNIENTRRFNTCLNNMAIRIATVFASLKELPCVWYRAAKDSDESTATAVRELVPTKLANAVWDMVSKYKSTIPGFPQNETCDMLIVDRSVDQIAPVIHEWTYDAMCHDLLTMDGDKYMHEVPSKVGGQPEIKEVILQDHDSVWLELRHTHIADASERLHEKFTNFVSKNKAAQIQQSGRDGSELSTRDLQKMVQALPQYTEQVEKISLHVEIAGKINKIIRETDLRELGQLEQDLVFGDAGAKEVINFLRTKQNTTPEYKLRLLMIYASVYPEKFEGDKASKLMQLAKLSPDDMKVISNMQQLAGSSNKKSSAAGGFSLKFSNQKTKQAARKDRTEEEETWQLFRFYPMLEELIENLSKGELAKNEYSCINEPNPSNARGSVRISKQTQTPPTTAPHSMRSRRTANWGRARTSDDGYSSDSTLKNVTTDFKRMGKRIFVFIIGGATRSELRVCHKLTPKLKREVILGTTSMDDPPQYLTKLKLLFDNNVSQLNGLGI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
