SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G60850 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:22482053-22483999 FORWARD LENGTH=648 | SoyBase | E_val: 3.00E-64 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1J7Y1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J7Y1_SOYBN | SoyBase | E_val: 7.00E-117 | ISS |
| UniRef100_Q10P50 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa Japonica Group RepID=Q10P50_ORYSJ | SoyBase | E_val: 6.00E-16 | ISS |
|
Glyma03g02661 not represented in the dataset |
Glyma03g02661 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g34506 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g023400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g02661.1 sequence type=CDS gene model=Glyma03g02661 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACATCCGCTCCGAAAATCCCTCCTCCGTCCTCTCCTCCTGGCGCAGTGCCTGGAAGGACAGCAATGAGGACACCGTCTACCTCACCGCCTGGAAAGGCGCCCTGGATCAGCTCACTACGCACCACGACGTTTCCTCCAACACCCACTTCCTCTGCTTAAAAATCAAACCGGAGTTGTTCGAGGTTTTGAATAAGGTTAGGAGTATAGGGGAAGTGGGGTTGAAGCCGGGGGCGATTGAGTTGATTACTGATAAGGTGGTGGAGGATGATGTGTTGGTTGGGGACAATGATTTGGCTAACTGGAGTAATCATCACGAGAGGATTTATGGGGATGGCAAGGACACGGAGCTGATTGAGGATGATGAGGATAGTTTTGGCCGGACTCTGGGAGAGGTTGTTTCGTGGGGTGATCAGATGACGACAGAGTGCAGGACTCAGAAAGATGATCTGATGAGTGACACCTGTAAGCCTGAGAAGTGGTTGAAGTGCAGCGACTTTGATGAGAAAAGCATTCTTGATTGCGAGGATATTAAACTAACCAAGCCTGTCAGATTGATCAGACACGACGAGGGTATAGTGTCGGATGTAGTAGGTCTTGGCTGTATGCAGGTCGACAGTTTCTACCAGGACAACCCTAAATGGTATGATTCTCCTTGTGCTTTGGATACTGGTACTGATTGTGGAGATAGTGGATTCCGTCACGGAGAGATTTTATAG
>Glyma03g02661.1 sequence type=predicted peptide gene model=Glyma03g02661 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDIRSENPSSVLSSWRSAWKDSNEDTVYLTAWKGALDQLTTHHDVSSNTHFLCLKIKPELFEVLNKVRSIGEVGLKPGAIELITDKVVEDDVLVGDNDLANWSNHHERIYGDGKDTELIEDDEDSFGRTLGEVVSWGDQMTTECRTQKDDLMSDTCKPEKWLKCSDFDEKSILDCEDIKLTKPVRLIRHDEGIVSDVVGLGCMQVDSFYQDNPKWYDSPCALDTGTDCGDSGFRHGEIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
