Glyma03g02500 - SoyBase

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Report for Sequence Feature Glyma03g02500

Feature Type:	gene_model
Chromosome:	Gm03
Start:	2276240
stop:	2279952
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g02500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45480	AT	Annotation by Michelle Graham. TAIR10: growth-regulating factor 9 \| chr2:18745583-18747403 FORWARD LENGTH=429	SoyBase	E_val: 1.00E-36	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016818	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	SoyBase	N/A	ISS
PF08879	PFAM	WRC	JGI		ISS
UniRef100_G7ZW50	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Growth-regulating factor n=1 Tax=Medicago truncatula RepID=G7ZW50_MEDTR	SoyBase	E_val: 1.00E-153	ISS
UniRef100_I1JKK1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JKK1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g02500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g02500

Paralog	Evidence	Comments
Glyma01g34650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g02500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g021900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g02500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g02500

Limit To All Plant Sequences

>Glyma03g02500.1   sequence type=CDS   gene model=Glyma03g02500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCTAAGCCTCTTCGAACTGTTCCCTCTTCACACAACACTTCTGGAGGTGGACCCCAGAAGAAGATTGGCATGGAACACAAGATGGAAAGTCGTGTTGTTGATGAGAGGAAGAGGGTTGTTATGGTCAAGGAAGAGAACAGCACTTCTTCTCCCAACAGTGTTGAACTTCATCTCGGGTTTGATGCTTCTCATTCGACTCCACAAGAAATAAACCATGTGATCACTGAAGCTCAGAGGCGTGAGCTTCACCATCAAGTTTTCATCTTCAACCATTTGGCTTATAATCTTCCTCCTCCTTATCACCTTGTGCAATTCCCTAGCAACATGTCAGAATACAGTTTCCTGGGTTTTGATCATGGGATTATGGTGGATCCAGAACCTCATAGGTGTAGAAGAACTGATGGAAAGAAATGGAGGTGTGGTAAGAATGTGGTGCCTAACCAGAAGTACTGTGAAAGGCACATGCACAGAGGTCGAAATCGTTCAAGAAAGCCTGTGGAAACATCTCAAGTTAACTCTCCTTTGGCAACAAAGCCTTGTAGCAAGTCACACACCAAACCATCCTCAAAGACACAATTTGAAATTTCAAGTCCAAACCTTATCGCCATTCCACATATTGACACATCAAGTACCCCATCAAGGAGCCTCAGTGTCACCAATTGCTCTTCTGCTAATAATAGGTCGAAAAATAGGGCAGGTTATGCTGACTACCTCATGTCGTTTTCTTCCGCGTCCACAGTGTCCCCTGGAACCACTCTTGCCACTCCAGTTGCCCCTAAGATAGCTGCCTTCAGCAGTGCGACATCCGTTGTTGCTTCAGATAGCAAAAGTTGCCTAAAGATATGCCAGAAAGATAACCAGTCCAAGAGCTGTATCAGCAACAACATCGGTGTTAAAAGCGGTGGGAAAGGAAGCATTGTTGGTGATACTAATACTAATGGCATCTCTACTGGAATAAGCTTCTCCCCAACGAGTGTTCTTCAAGTTTCAGTTTCTGGTTGCAACCCTTCATACCTGAATGACGGAACCAACATAGAAGCTGCATCCGGTAGGTGCCGGAGAACAGATGGTAAGAAGTGGCAGTGCAAGAGTGCTGTTCTTCCTGGTCAGAAATACTGTGCCACACACATGCATAGAGGTGCCAAAAAGCGTCTCACAAGCCATGAACCAGCAGCTACTGCTACCAGTTCCGCCGTTACCGTTGCGCGGTTGCCTTACTCTTCAGCCACTACCAACATACAGAAAGCGCATTGTGCAATTCCAAACACAAATCTTTCCATGTCAGTCCAAGCCAGGGAAGCATTCATACAATGTAATGAGAAAAGTCAAAGTAGCAGTGACACTGATACTACTATCAGTGACACCTTGAATGAGTATAGCTATGCTTCTTTCTGA

Predicted protein sequences of Glyma03g02500

Limit To All Plant Sequences

>Glyma03g02500.1   sequence type=predicted peptide   gene model=Glyma03g02500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAKPLRTVPSSHNTSGGGPQKKIGMEHKMESRVVDERKRVVMVKEENSTSSPNSVELHLGFDASHSTPQEINHVITEAQRRELHHQVFIFNHLAYNLPPPYHLVQFPSNMSEYSFLGFDHGIMVDPEPHRCRRTDGKKWRCGKNVVPNQKYCERHMHRGRNRSRKPVETSQVNSPLATKPCSKSHTKPSSKTQFEISSPNLIAIPHIDTSSTPSRSLSVTNCSSANNRSKNRAGYADYLMSFSSASTVSPGTTLATPVAPKIAAFSSATSVVASDSKSCLKICQKDNQSKSCISNNIGVKSGGKGSIVGDTNTNGISTGISFSPTSVLQVSVSGCNPSYLNDGTNIEAASGRCRRTDGKKWQCKSAVLPGQKYCATHMHRGAKKRLTSHEPAATATSSAVTVARLPYSSATTNIQKAHCAIPNTNLSMSVQAREAFIQCNEKSQSSSDTDTTISDTLNEYSYASF*

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