Glyma03g02400 - SoyBase

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Report for Sequence Feature Glyma03g02400

Feature Type:	gene_model
Chromosome:	Gm03
Start:	2154335
stop:	2158554
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g02400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12650	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). \| chr1:4306183-4307673 FORW	SoyBase	E_val: 3.00E-64	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0051604	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein maturation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3190	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR21738	Panther	UNCHARACTERIZED	JGI		ISS
PF06102	PFAM	Domain of unknown function (DUF947)	JGI		ISS
UniRef100_B6T986	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Testis intracellular mediator protein n=2 Tax=Zea mays RepID=B6T986_MAIZE	SoyBase	E_val: 2.00E-70	ISS
UniRef100_I1JKJ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JKJ5_SOYBN	SoyBase	E_val: 9.00E-153	ISS

Expression Patterns of Glyma03g02400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g02400 not represented in the dataset	Glyma03g02400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g02400

Paralog	Evidence	Comments
Glyma07g09100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g02400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g021100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g02400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g02400

Limit To All Plant Sequences

>Glyma03g02400.2   sequence type=transcript   gene model=Glyma03g02400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCGTATTTTTATTATGATTGATAAATGATAACTAATTGTGATTTGTAATTGGTTTTAGCCTTAACTGATTGGCAGATTACTATTATTAAGTATTAAGAAATTGTATCTGTTTGATTCTTAAATATAACGGATAGGATATTTTAATAATTGTATATAGAATTGTCTAAAACCTTCTCAGTTCCCTCTTCACAAACCCTCGGATCACAGTGTTAGGGTTCTTCAATTTTCTCCGATTGCCATCAAACATCACACACCACCCACCAACTATACGTCAGCATTGAACCCTAAAATACATGACTCAGAAGCAGAGAACCAGAATCCCAGATTCCATGGAAACCCAGTACGAGGAGAGTGAGAAAGACGAGTCTTCCTCTTCTTATAGTTCCTCAGAAGACGAGGAGGAAGAGATAGAGAAGGAGCTGGCTGATGTAACGTTTGAGGAGTTGCAGAAAGCACGCTCGAATGGGGCACATGCATTTTTCCAGAAACCCAAAGAAGACATAAAATTAAAAAGGGCTAACAAGAATAGGCCAATGGAAGCTAGTAGCAAGAAGCCAGTTACTGGGTTTAGAGAGGTCATCCAAGCTCCAAAGAAGGTTGTACGTGATCCACGATTTGAATCTCTTTGTGGTAAACTTGACCCTGATGGAAACTGTCAGATAATGCTGAAGGATTCTTGTTCTGATCTGTATCATAGTGCGTACCAAGAAGTATCAAGGTTTAGGAAGAGATATAATTTCTTATACGAAAATGATCTTCCTGCTGAAAGACAGGCTCTTAAGAAGGAATTGAAAAAATATAAAGACCCGAAGCGTGTAAATGAAATAGAAGAACGTATATCATGGATTGATAAACAAGTGAAGTCTGATTCAGCGAAGCATATTGATGCAGAAATATTGGCTAAGCACAAAAAGAAAGAGAGAGAAGCAGCAAAGCAGGGAAAACGTCCTTTTTATCTCAAGAAATCTGAAATACGGAAGCAAAGGCTTATTGAAAAATATAACCATCTCAAGTCATCTGGCAAACTGGAAGCATTTGTTGAGAAAAGGAGGAGGAGGAATGCTGCAAAGGACCATAGATACATGCCATATCGTAGATCTGGTGATGTGGAATAGGTTTTGTAGCTTTAAGATTCTTTTGTAGGCTAAAATTATACTGGAATATAGCACCAAAAAGAAAAGTAGTGTATTTATTCGGTCTGCCATCTTTGGGGATTAAATATGAACTCTTGTTGATGACTATCATGGTATTTGTTCTGTGACTGGTATTTATCTATTCTTGAAGATTTACTAATTGGGGAATGGAGAGGCGCCTCTAGGCTATAAGGCAATCTTTTGATTCTCTGCTATGTTCTTGTGGGAGAACTTCCTTTCGCCATTATCGTTAGGTCCCTTGTTTTAGAACCCATGTGTAATCTGTTCAAGCTTTTTCTTAGAAAAAAAATTCATTGATAAACAATCAGAATCTGAAAAAGAATGAGAT

>Glyma03g02400.3   sequence type=transcript   gene model=Glyma03g02400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCGTATTTTTATTATGATTGATAAATGATAACTAATTGTGATTTGTAATTGGTTTTAGCCTTAACTGATTGGCAGATTACTATTATTAAGTATTAAGAAATTGTATCTGTTTGATTCTTAAATATAACGGATAGGATATTTTAATAATTGTATATAGAATTGTCTAAAACCTTCTCAGTTCCCTCTTCACAAACCCTCGGATCACAGTGTTAGGGTTCTTCAATTTTCTCCGATTGCCATCAAACATCACACACCACCCACCAACTATACGTCAGCATTGAACCCTAAAATACATGACTCAGAGAACCAGAATCCCAGATTCCATGGAAACCCAGTACGAGGAGAGTGAGAAAGACGAGTCTTCCTCTTCTTATAGTTCCTCAGAAGACGAGGAGGAAGAGATAGAGAAGGAGCTGGCTGATGTAACGTTTGAGGAGTTGCAGAAAGCACGCTCGAATGGGGCACATGCATTTTTCCAGAAACCCAAAGAAGACATAAAATTAAAAAGGGCTAACAAGAATAGGCCAATGGAAGCTAGTAGCAAGAAGCCAGTTACTGGGTTTAGAGAGGTCATCCAAGCTCCAAAGAAGGTTGTACGTGATCCACGATTTGAATCTCTTTGTGGTAAACTTGACCCTGATGGAAACTGTCAGATAATGCTGAAGGATTCTTGTTCTGATCTGTATCATAGTGCGTACCAAGAAGTATCAAGGTTTAGGAAGAGATATAATTTCTTATACGAAAATGATCTTCCTGCTGAAAGACAGGCTCTTAAGAAGGAATTGAAAAAATATAAAGACCCGAAGCGTGTAAATGAAATAGAAGAACGTATATCATGGATTGATAAACAAGTGAAGTCTGATTCAGCGAAGCATATTGATGCAGAAATATTGGCTAAGCACAAAAAGAAAGAGAGAGAAGCAGCAAAGCAGGGAAAACGTCCTTTTTATCTCAAGAAATCTGAAATACGGAAGCAAAGGCTTATTGAAAAATATAACCATCTCAAGTCATCTGGCAAACTGGAAGCATTTGTTGAGAAAAGGAGGAGGAGGAATGCTGCAAAGGACCATAGATACATGCCATATCGTAGATCTGGTGATGTGGAATAGGTTTTGTAGCTTTAAGATTCTTTTGTAGGCTAAAATTATACTGGAATATAGCACCAAAAAGAAAAGTAGTGTATTTATTCGGTCTGCCATCTTTGGGGATTAAATATGAACTCTTGTTGATGACTATCATGGTATTTGTTCTGTGACTGGTATTTATCTATTCTTGAAGATTTACTAATTGGGGAATGGAGAGGCGCCTCTAGGCTATAAGGCAATCTTTTGATTCTCTGCTATGTTCTTGTGGGAGAACTTCCTTTCGCCATTATCGTTAGGTCCCTTGTTTTAGAACCCATGTGTAATCTGTTCAAGCTTTTTCTTAGAAAAAAAATTCATTGATAAACAATCAGAATCTGAAAAAGAATGAGAT

>Glyma03g02400.4   sequence type=transcript   gene model=Glyma03g02400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTATTTTGATTGGTAGATTGGCGTATTTTTATTATGATTGATAAATGATAACTAATTGTGATTTGTAATTGGTTTTAGCCTTAACTGATTGGCAGATTACTATTATTAAGTATTAAGAAATTGTATCTGTTTGATTCTTAAATATAACGGATAGGATATTTTAATAATTGTATATAGAATTGTCTAAAACCTTCTCAGTTCCCTCTTCACAAACCCTCGGATCACAGTGTTAGGGTTCTTCAATTTTCTCCGATTGCCATCAAACATCACACACCACCCACCAACTATACGTCAGCATTGAACCCTAAAATACATGACTCAGAGAACCAGAATCCCAGATTCCATGGAAACCCAGTACGAGGAGAGTGAGAAAGACGAGTCTTCCTCTTCTTATAGTTCCTCAGAAGACGAGGAGGAAGAGATAGAGAAGGAGCTGGCTGATGTAACGTTTGAGGAGTTGCAGAAAGCACGCTCGAATGGGGCACATGCATTTTTCCAGAAACCCAAAGAAGACATAAAATTAAAAAGGGCTAACAAGAATAGGCCAATGGAAGCTAGTAGCAAGAAGCCAGTTACTGGGTTTAGAGAGGTCATCCAAGCTCCAAAGAAGGTTGTACGTGATCCACGATTTGAATCTCTTTGTGGTAAACTTGACCCTGATGGGTTTAGGAAGAGATATAATTTCTTATACGAAAATGATCTTCCTGCTGAAAGACAGGCTCTTAAGAAGGAATTGAAAAAATATAAAGACCCGAAGCGTGTAAATGAAATAGAAGAACGTATATCATGGATTGATAAACAAGTGAAGTCTGATTCAGCGAAGCATATTGATGCAGAAATATTGGCTAAGCACAAAAAGAAAGAGAGAGAAGCAGCAAAGCAGGGAAAACGTCCTTTTTATCTCAAGAAATCTGAAATACGGAAGCAAAGGCTTATTGAAAAATATAACCATCTCAAGTCATCTGGCAAACTGGAAGCATTTGTTGAGAAAAGGAGGAGGAGGAATGCTGCAAAGGACCATAGATACATGCCATATCGTAGATCTGGTGATGTGGAATAGGTTTTGTAGCTTTAAGATTCTTTTGTAGGCTAAAATTATACTGGAATATAGCACCAAAAAGAAAAGTAGTGTATTTATTCGGTCTGCCATCTTTGGGGATTAAATATGAACTCTTGTTGATGACTATCATGGTATTTGTTCTGTGACTGGTATTTATCTATTCTTGAAGATTTACTAATTGGGGAATGGAGAGGCGCCTCTAGGCTATAAGGCAATCTTTTGATTCTCTGCTATGTTCTTGTGGGAGAACTTCCTTTCGCCATTATCGTTAGGTCCCTTGTTTTAGAACCCATGTGTAATCTGTTCAAGCTTTTTCTTAGAAAAAAAATTCATTGATAAACAATCAGAATCTGAAAAAGAATGAGAT

Coding sequences of Glyma03g02400

Limit To All Plant Sequences

>Glyma03g02400.1   sequence type=CDS   gene model=Glyma03g02400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCAGAAGCAGAGAACCAGAATCCCAGATTCCATGGAAACCCAGTACGAGGAGAGTGAGAAAGACGAGTCTTCCTCTTCTTATAGTTCCTCAGAAGACGAGGAGGAAGAGATAGAGAAGGAGCTGGCTGATGTAACGTTTGAGGAGTTGCAGAAAGCACGCTCGAATGGGGCACATGCATTTTTCCAGAAACCCAAAGAAGACATAAAATTAAAAAGGGCTAACAAGAATAGGCCAATGGAAGCTAGTAGCAAGAAGCCAGTTACTGGGTTTAGAGAGGTCATCCAAGCTCCAAAGAAGGTTGTACGTGATCCACGATTTGAATCTCTTTGTGGTAAACTTGACCCTGATGGGTTTAGGAAGAGATATAATTTCTTATACGAAAATGATCTTCCTGCTGAAAGACAGGCTCTTAAGAAGGAATTGAAAAAATATAAAGACCCGAAGCGTGTAAATGAAATAGAAGAACGTATATCATGGATTGATAAACAAGTGAAGTCTGATTCAGCGAAGCATATTGATGCAGAAATATTGGCTAAGCACAAAAAGAAAGAGAGAGAAGCAGCAAAGCAGGGAAAACGTCCTTTTTATCTCAAGAAATCTGAAATACGGAAGCAAAGGCTTATTGAAAAATATAACCATCTCAAGTCATCTGGCAAACTGGAAGCATTTGTTGAGAAAAGGAGGAGGAGGAATGCTGCAAAGGACCATAGATACATGCCATATCGTAGATCTGGTGATGTGGAATAG

>Glyma03g02400.2   sequence type=CDS   gene model=Glyma03g02400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCAGAAGCAGAGAACCAGAATCCCAGATTCCATGGAAACCCAGTACGAGGAGAGTGAGAAAGACGAGTCTTCCTCTTCTTATAGTTCCTCAGAAGACGAGGAGGAAGAGATAGAGAAGGAGCTGGCTGATGTAACGTTTGAGGAGTTGCAGAAAGCACGCTCGAATGGGGCACATGCATTTTTCCAGAAACCCAAAGAAGACATAAAATTAAAAAGGGCTAACAAGAATAGGCCAATGGAAGCTAGTAGCAAGAAGCCAGTTACTGGGTTTAGAGAGGTCATCCAAGCTCCAAAGAAGGTTGTACGTGATCCACGATTTGAATCTCTTTGTGGTAAACTTGACCCTGATGGAAACTGTCAGATAATGCTGAAGGATTCTTGTTCTGATCTGTATCATAGTGCGTACCAAGAAGTATCAAGGTTTAGGAAGAGATATAATTTCTTATACGAAAATGATCTTCCTGCTGAAAGACAGGCTCTTAAGAAGGAATTGAAAAAATATAAAGACCCGAAGCGTGTAAATGAAATAGAAGAACGTATATCATGGATTGATAAACAAGTGAAGTCTGATTCAGCGAAGCATATTGATGCAGAAATATTGGCTAAGCACAAAAAGAAAGAGAGAGAAGCAGCAAAGCAGGGAAAACGTCCTTTTTATCTCAAGAAATCTGAAATACGGAAGCAAAGGCTTATTGAAAAATATAACCATCTCAAGTCATCTGGCAAACTGGAAGCATTTGTTGAGAAAAGGAGGAGGAGGAATGCTGCAAAGGACCATAGATACATGCCATATCGTAGATCTGGTGATGTGGAATAG

>Glyma03g02400.3   sequence type=CDS   gene model=Glyma03g02400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCAGAGAACCAGAATCCCAGATTCCATGGAAACCCAGTACGAGGAGAGTGAGAAAGACGAGTCTTCCTCTTCTTATAGTTCCTCAGAAGACGAGGAGGAAGAGATAGAGAAGGAGCTGGCTGATGTAACGTTTGAGGAGTTGCAGAAAGCACGCTCGAATGGGGCACATGCATTTTTCCAGAAACCCAAAGAAGACATAAAATTAAAAAGGGCTAACAAGAATAGGCCAATGGAAGCTAGTAGCAAGAAGCCAGTTACTGGGTTTAGAGAGGTCATCCAAGCTCCAAAGAAGGTTGTACGTGATCCACGATTTGAATCTCTTTGTGGTAAACTTGACCCTGATGGAAACTGTCAGATAATGCTGAAGGATTCTTGTTCTGATCTGTATCATAGTGCGTACCAAGAAGTATCAAGGTTTAGGAAGAGATATAATTTCTTATACGAAAATGATCTTCCTGCTGAAAGACAGGCTCTTAAGAAGGAATTGAAAAAATATAAAGACCCGAAGCGTGTAAATGAAATAGAAGAACGTATATCATGGATTGATAAACAAGTGAAGTCTGATTCAGCGAAGCATATTGATGCAGAAATATTGGCTAAGCACAAAAAGAAAGAGAGAGAAGCAGCAAAGCAGGGAAAACGTCCTTTTTATCTCAAGAAATCTGAAATACGGAAGCAAAGGCTTATTGAAAAATATAACCATCTCAAGTCATCTGGCAAACTGGAAGCATTTGTTGAGAAAAGGAGGAGGAGGAATGCTGCAAAGGACCATAGATACATGCCATATCGTAGATCTGGTGATGTGGAATAG

>Glyma03g02400.4   sequence type=CDS   gene model=Glyma03g02400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCAGAGAACCAGAATCCCAGATTCCATGGAAACCCAGTACGAGGAGAGTGAGAAAGACGAGTCTTCCTCTTCTTATAGTTCCTCAGAAGACGAGGAGGAAGAGATAGAGAAGGAGCTGGCTGATGTAACGTTTGAGGAGTTGCAGAAAGCACGCTCGAATGGGGCACATGCATTTTTCCAGAAACCCAAAGAAGACATAAAATTAAAAAGGGCTAACAAGAATAGGCCAATGGAAGCTAGTAGCAAGAAGCCAGTTACTGGGTTTAGAGAGGTCATCCAAGCTCCAAAGAAGGTTGTACGTGATCCACGATTTGAATCTCTTTGTGGTAAACTTGACCCTGATGGGTTTAGGAAGAGATATAATTTCTTATACGAAAATGATCTTCCTGCTGAAAGACAGGCTCTTAAGAAGGAATTGAAAAAATATAAAGACCCGAAGCGTGTAAATGAAATAGAAGAACGTATATCATGGATTGATAAACAAGTGAAGTCTGATTCAGCGAAGCATATTGATGCAGAAATATTGGCTAAGCACAAAAAGAAAGAGAGAGAAGCAGCAAAGCAGGGAAAACGTCCTTTTTATCTCAAGAAATCTGAAATACGGAAGCAAAGGCTTATTGAAAAATATAACCATCTCAAGTCATCTGGCAAACTGGAAGCATTTGTTGAGAAAAGGAGGAGGAGGAATGCTGCAAAGGACCATAGATACATGCCATATCGTAGATCTGGTGATGTGGAATAG

Predicted protein sequences of Glyma03g02400

Limit To All Plant Sequences

>Glyma03g02400.1   sequence type=predicted peptide   gene model=Glyma03g02400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQKQRTRIPDSMETQYEESEKDESSSSYSSSEDEEEEIEKELADVTFEELQKARSNGAHAFFQKPKEDIKLKRANKNRPMEASSKKPVTGFREVIQAPKKVVRDPRFESLCGKLDPDGFRKRYNFLYENDLPAERQALKKELKKYKDPKRVNEIEERISWIDKQVKSDSAKHIDAEILAKHKKKEREAAKQGKRPFYLKKSEIRKQRLIEKYNHLKSSGKLEAFVEKRRRRNAAKDHRYMPYRRSGDVE*

>Glyma03g02400.2   sequence type=predicted peptide   gene model=Glyma03g02400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQKQRTRIPDSMETQYEESEKDESSSSYSSSEDEEEEIEKELADVTFEELQKARSNGAHAFFQKPKEDIKLKRANKNRPMEASSKKPVTGFREVIQAPKKVVRDPRFESLCGKLDPDGNCQIMLKDSCSDLYHSAYQEVSRFRKRYNFLYENDLPAERQALKKELKKYKDPKRVNEIEERISWIDKQVKSDSAKHIDAEILAKHKKKEREAAKQGKRPFYLKKSEIRKQRLIEKYNHLKSSGKLEAFVEKRRRRNAAKDHRYMPYRRSGDVE*

>Glyma03g02400.3   sequence type=predicted peptide   gene model=Glyma03g02400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQRTRIPDSMETQYEESEKDESSSSYSSSEDEEEEIEKELADVTFEELQKARSNGAHAFFQKPKEDIKLKRANKNRPMEASSKKPVTGFREVIQAPKKVVRDPRFESLCGKLDPDGNCQIMLKDSCSDLYHSAYQEVSRFRKRYNFLYENDLPAERQALKKELKKYKDPKRVNEIEERISWIDKQVKSDSAKHIDAEILAKHKKKEREAAKQGKRPFYLKKSEIRKQRLIEKYNHLKSSGKLEAFVEKRRRRNAAKDHRYMPYRRSGDVE*

>Glyma03g02400.4   sequence type=predicted peptide   gene model=Glyma03g02400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQRTRIPDSMETQYEESEKDESSSSYSSSEDEEEEIEKELADVTFEELQKARSNGAHAFFQKPKEDIKLKRANKNRPMEASSKKPVTGFREVIQAPKKVVRDPRFESLCGKLDPDGFRKRYNFLYENDLPAERQALKKELKKYKDPKRVNEIEERISWIDKQVKSDSAKHIDAEILAKHKKKEREAAKQGKRPFYLKKSEIRKQRLIEKYNHLKSSGKLEAFVEKRRRRNAAKDHRYMPYRRSGDVE*

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