Glyma03g02370 - SoyBase

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Report for Sequence Feature Glyma03g02370

Feature Type:	gene_model
Chromosome:	Gm03
Start:	2115717
stop:	2126570
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g02370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G61050	AT	Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein \| chr3:22597485-22600932 FORWARD LENGTH=510	SoyBase	E_val: 0	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009958	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive gravitropism	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031965	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear membrane	SoyBase	N/A	ISS
GO:0008289	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipid binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PTHR10774	Panther	CALCIUM-DEPENDENT LIPID-BINDING PROTEIN (CALB RELATED)	JGI		ISS
PTHR10774:SF2	Panther	CALCIUM LIPID BINDING PROTEIN	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
UniRef100_G7L1E7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Extended synaptotagmin-2-A n=1 Tax=Medicago truncatula RepID=G7L1E7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023397A6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023397A6 related cluster n=1 Tax=unknown RepID=UPI00023397A6	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g02370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g02370

Paralog	Evidence	Comments
Glyma07g09070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g02370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g020800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g02370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g02370

Limit To All Plant Sequences

>Glyma03g02370.3   sequence type=transcript   gene model=Glyma03g02370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAAAGTATAAATGTAAAAAATGACAACAATGTTGAAGATGTAGAGACCCTACAGCTCAGCTAGGAAGGCTTTAATGCTTTGTTTTCAATCCTGTGGAGGGAGAGAAGATGAACGCACAACACTGAAAGTAACGTTAGAAACGAGAAAACTTTGCATTATTCACAGTTTTGAAAACTCACTCACAGTAGTAGAAGGGAGTCCTACATCTTCTAGCATTAAACAAGAAGAAGAAAAAATCAACATTTTGGGTTTTTCATTTGGCTGCAACTTTTGGTCTCTCTGCAGAATCTCATTCCAATTGGAGTTCATCCTCTAAAAGGAAAGGTGGTGTTTGGACTCTGGGAAAATGGGTTTGTTTTCTGGGATTTTTATGGGGGTGTTGTTCGGCATCGCATTGATGGCTGGATGGGCACGCATGATGAGGTACCGAAGTGCCAAACGAATTGCAAAGGCAGCTGACATTAAACTCCTTGGATCCCTTAACAGAGATGATTTAAAGAAAATTTGTGGTGATAATTTGCCTGAGTGGATATCTTTTCCTGTATATGAACAGGTGAAATGGCTAAACAAGAAACTGACCAAACTTTGGCCATTTGTGGCAGAAGCAGCAACCTTGGTGATCAGAGAATCTGTTGAACCACTGCTAGAAGAGTACAGACCTCCAGGAATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAAATGTGGCTCCGAAAATTGAAGGTATTCGTGTTCAGAGCTTAACCAAAGGTCAAATCATAATGGATATTGATTTCCGTTGGGGTGGTGATCCTAGTATTATTTTGGCTGTTGAAGCTGCACTTGTTGCATCAATCCCTATACAGTTGAAGGATCTACAGGTTTTCACCATTGTCCGTGTGATATTTCAACTTGCTGAAGAGATCCCCTGCATTTCTGCTGTTGTTGTAGCTCTGCTTGCTGAGCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACGGCTATTCCTGGAATCTCAGATATGATTGATGATACTGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATTGTGGTTCCACTTGGTGGCATTCCTGTTGATACCAGTGAACTGGAGCTTAAACCCCAGGGAAAACTTGCACTGACTGTTGTCAAAGCAACTGCTTTAAAGAATATGGAAATGATTGGAAAGTCAGATCCTTATGTAGTTGTGCATATTCGACCATTATTTAAGTATAAAACCAAGGTTATTGATAACAACCTGAATCCTATTTGGAATGAGAAATTCGAGTTGATTGCAGAAGACAAGGAGACCCAATCACTCATTCTTGAGGTTCTTGATAAAGACATTGGGCAAGATAAGCGATTGGGAATAGCACAGTTACCCCTTATTGGTCTAGAAATACAAACTGAAAAGGAGATCGAATTGAGGCTGCTGCCCTCACTTGATACACTTAAGGTGAAAGATAAGAAAGATCGAGGAACCTTAACAGTGAAGGTCATGTATTATCAGTTTAACAAGGAAGAGCAGCTGGTTGCGCTAGAAGCAGAAAAGGAGATACTAGAAGAAAGGAAGAAACTGAAAGAAGCGGGAGTGATAGGAAGCACAATGGATGCACTAGATGGAGCAGTATCAGTGGTAGGGTCTGGTGTTGGACTGGTTGGTACTGGTGTTGTTGCAGGTGCCGGTCTTGTGGGAAGTGGCGTCGTCGCGGGTGCTGGGCTTGTGGGAAGTGGCATTGGTGCTGGAGCAGGGCTGGTTGGAAGCGGCATCGGTGCTGGAGTTGGCATTGTCGGGAGCGGTCTTGGAGCCGTTGGTAGTGGACTGAGCAAGGCAGGGAAGTTCATGGGAAGGACAATCACAGGTCATAGTGGCTCCAGAAAGAGTGGTTCTTCGACTCCAGTCAACAATGCTCAGGAGAATGGTGGTGGTGCAAAGCCTCTTTGATTCCTTTCCTTTGTATTGTAAGACTAATGAATGGACCTTTGCAGGCTCAAGCTTTGATAATAGATAGATTTTCTGTGTATGTGTTGCTTTCTTTTTTTACCATAATATTTTCTCCAAGGCTGTTAATCTACCTAGATTGGCAAAATGGTAGCAGAAATATCAATTTAGTTCTGTTGTATCATCTTTGTCTGTAATTATGCTTGACCTAAAATTGTGATAAAACTCATCAATTGTAAACATCCTTATTAGTTCAGGTGCATGATGCAACTTGTATCATCCTTATTTATAATTGTGTTTTGAGGCTTTGAGCTGGATTTGTAATGAAACATGAATATTGTAAAAATTCCTTATTTATTGGAAATCAATGTGGTTCAAAACAAAAAGAAATAAACATTCTAAGCTACTCGATAAA

Coding sequences of Glyma03g02370

Limit To All Plant Sequences

>Glyma03g02370.1   sequence type=CDS   gene model=Glyma03g02370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTGTTTTCTGGGATTTTTATGGGGGTGTTGTTCGGCATCGCATTGATGGCTGGATGGGCACGCATGATGAGGTACCGAAGTGCCAAACGAATTGCAAAGGCAGCTGACATTAAACTCCTTGGATCCCTTAACAGAGATGATTTAAAGAAAATTTGTGGTGATAATTTGCCTGAGTGGATATCTTTTCCTGTATATGAACAGGTGAAATGGCTAAACAAGAAACTGACCAAACTTTGGCCATTTGTGGCAGAAGCAGCAACCTTGGTGATCAGAGAATCTGTTGAACCACTGCTAGAAGAGTACAGACCTCCAGGAATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAAATGTGGCTCCGAAAATTGAAGGTATTCGTGTTCAGAGCTTAACCAAAGGTCAAATCATAATGGATATTGATTTCCGTTGGGGTGGTGATCCTAGTATTATTTTGGCTGTTGAAGCTGCACTTGTTGCATCAATCCCTATACAGTTGAAGGATCTACAGGTTTTCACCATTGTCCGTGTGATATTTCAACTTGCTGAAGAGATCCCCTGCATTTCTGCTGTTGTTGTAGCTCTGCTTGCTGAGCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACGGCTATTCCTGGAATCTCAGATATGATTGATGATACTGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATTGTGGTTCCACTTGGTGGCATTCCTGTTGATACCAGTGAACTGGAGCTTAAACCCCAGGGAAAACTTGCACTGACTGTTGTCAAAGCAACTGCTTTAAAGAATATGGAAATGATTGGAAAGTCAGATCCTTATGTAGTTGTGCATATTCGACCATTATTTAAGTATAAAACCAAGGTTATTGATAACAACCTGAATCCTATTTGGAATGAGAAATTCGAGTTGATTGCAGAAGACAAGGAGACCCAATCACTCATTCTTGAGGTTCTTGATAAAGACATTGGGCAAGATAAGCGATTGGGAATAGCACAGTTACCCCTTATTGGTCTAGAAATACAAACTGAAAAGGAGATCGAATTGAGGCTGCTGCCCTCACTTGATACACTTAAGGTGAAAGATAAGAAAGATCGAGGAACCTTAACAGTGAAGGTATATGTAATGATCTATTTGTACGGTATACATAGATATAGTCATATAGATGTAAACTAA

>Glyma03g02370.3   sequence type=CDS   gene model=Glyma03g02370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTGTTTTCTGGGATTTTTATGGGGGTGTTGTTCGGCATCGCATTGATGGCTGGATGGGCACGCATGATGAGGTACCGAAGTGCCAAACGAATTGCAAAGGCAGCTGACATTAAACTCCTTGGATCCCTTAACAGAGATGATTTAAAGAAAATTTGTGGTGATAATTTGCCTGAGTGGATATCTTTTCCTGTATATGAACAGGTGAAATGGCTAAACAAGAAACTGACCAAACTTTGGCCATTTGTGGCAGAAGCAGCAACCTTGGTGATCAGAGAATCTGTTGAACCACTGCTAGAAGAGTACAGACCTCCAGGAATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAAATGTGGCTCCGAAAATTGAAGGTATTCGTGTTCAGAGCTTAACCAAAGGTCAAATCATAATGGATATTGATTTCCGTTGGGGTGGTGATCCTAGTATTATTTTGGCTGTTGAAGCTGCACTTGTTGCATCAATCCCTATACAGTTGAAGGATCTACAGGTTTTCACCATTGTCCGTGTGATATTTCAACTTGCTGAAGAGATCCCCTGCATTTCTGCTGTTGTTGTAGCTCTGCTTGCTGAGCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACGGCTATTCCTGGAATCTCAGATATGATTGATGATACTGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATTGTGGTTCCACTTGGTGGCATTCCTGTTGATACCAGTGAACTGGAGCTTAAACCCCAGGGAAAACTTGCACTGACTGTTGTCAAAGCAACTGCTTTAAAGAATATGGAAATGATTGGAAAGTCAGATCCTTATGTAGTTGTGCATATTCGACCATTATTTAAGTATAAAACCAAGGTTATTGATAACAACCTGAATCCTATTTGGAATGAGAAATTCGAGTTGATTGCAGAAGACAAGGAGACCCAATCACTCATTCTTGAGGTTCTTGATAAAGACATTGGGCAAGATAAGCGATTGGGAATAGCACAGTTACCCCTTATTGGTCTAGAAATACAAACTGAAAAGGAGATCGAATTGAGGCTGCTGCCCTCACTTGATACACTTAAGGTGAAAGATAAGAAAGATCGAGGAACCTTAACAGTGAAGGTCATGTATTATCAGTTTAACAAGGAAGAGCAGCTGGTTGCGCTAGAAGCAGAAAAGGAGATACTAGAAGAAAGGAAGAAACTGAAAGAAGCGGGAGTGATAGGAAGCACAATGGATGCACTAGATGGAGCAGTATCAGTGGTAGGGTCTGGTGTTGGACTGGTTGGTACTGGTGTTGTTGCAGGTGCCGGTCTTGTGGGAAGTGGCGTCGTCGCGGGTGCTGGGCTTGTGGGAAGTGGCATTGGTGCTGGAGCAGGGCTGGTTGGAAGCGGCATCGGTGCTGGAGTTGGCATTGTCGGGAGCGGTCTTGGAGCCGTTGGTAGTGGACTGAGCAAGGCAGGGAAGTTCATGGGAAGGACAATCACAGGTCATAGTGGCTCCAGAAAGAGTGGTTCTTCGACTCCAGTCAACAATGCTCAGGAGAATGGTGGTGGTGCAAAGCCTCTTTGA

Predicted protein sequences of Glyma03g02370

Limit To All Plant Sequences

>Glyma03g02370.1   sequence type=predicted peptide   gene model=Glyma03g02370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLFSGIFMGVLFGIALMAGWARMMRYRSAKRIAKAADIKLLGSLNRDDLKKICGDNLPEWISFPVYEQVKWLNKKLTKLWPFVAEAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTIVRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGIPVDTSELELKPQGKLALTVVKATALKNMEMIGKSDPYVVVHIRPLFKYKTKVIDNNLNPIWNEKFELIAEDKETQSLILEVLDKDIGQDKRLGIAQLPLIGLEIQTEKEIELRLLPSLDTLKVKDKKDRGTLTVKVYVMIYLYGIHRYSHIDVN*

>Glyma03g02370.3   sequence type=predicted peptide   gene model=Glyma03g02370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLFSGIFMGVLFGIALMAGWARMMRYRSAKRIAKAADIKLLGSLNRDDLKKICGDNLPEWISFPVYEQVKWLNKKLTKLWPFVAEAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTIVRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGIPVDTSELELKPQGKLALTVVKATALKNMEMIGKSDPYVVVHIRPLFKYKTKVIDNNLNPIWNEKFELIAEDKETQSLILEVLDKDIGQDKRLGIAQLPLIGLEIQTEKEIELRLLPSLDTLKVKDKKDRGTLTVKVMYYQFNKEEQLVALEAEKEILEERKKLKEAGVIGSTMDALDGAVSVVGSGVGLVGTGVVAGAGLVGSGVVAGAGLVGSGIGAGAGLVGSGIGAGVGIVGSGLGAVGSGLSKAGKFMGRTITGHSGSRKSGSSTPVNNAQENGGGAKPL*

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