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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G11920 | AT | Annotation by Michelle Graham. TAIR10: glutaredoxin-related | chr3:3772311-3774887 FORWARD LENGTH=630 | SoyBase | E_val: 0 | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0045454 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis | SoyBase | N/A | ISS |
| GO:0048653 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anther development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0015035 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity | SoyBase | N/A | ISS |
| KOG1752 | KOG | Glutaredoxin and related proteins | JGI | ISS | |
| PTHR23054 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF00462 | PFAM | Glutaredoxin | JGI | ISS | |
| PF00610 | PFAM | Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) | JGI | ISS | |
| PF04784 | PFAM | Protein of unknown function, DUF547 | JGI | ISS | |
| UniRef100_B9RY43 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Electron transporter, putative n=1 Tax=Ricinus communis RepID=B9RY43_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JKH8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JKH8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g02230 not represented in the dataset |
Glyma03g02230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g08900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g019500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g02230.2 sequence type=transcript gene model=Glyma03g02230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CATTATCATTTCCAAATCCTCCACTCCATAAAAACCCCTTCTCTTTTCTTTTTTCCTCCTAAGATTCTTTCTCCATAATGGGTTCCGAAGAGAACGGCACGGAAATTCAAATTCAGAATCCAACACACACACAAACACAACAACATAGTAATCCTAATAATATTGCTTCACCCGAAATCCACGCTAACACCTCCAACAACCAAATTGAAATCACTTCCCATTATGGCGGTGACGACGCCGAGAGTGACAGGCATGTAACTCTAGTAGTCCACCCTCATTCCCTTCTCCCCATGCCCGTGCCACCGCAGAGTTTCAAATCCAACGAAAACGATGCCGTTTCGTCGAACGACTCGAACTTCTCCGTCGGAAGCTTCCTCCGCCAGCGCAGCAGCCACCTCTCCGCCGCGATCGTGAAGCGCGTCTCCTCTCTCCGCCAATCCATGGAAGAAAAAACCAACGACGACGAGGAAGAGAATCTCGAAGTCACGGAGTTCAGCCTTTCCGGCGTCAAGGTCACGGTGACGCCGAAGCCGGAAGAGGAAAAGGAAACCTCGTTTAAAGGACGCATCAGCTTCTTCTCGAAATCTAATTGCAGAGACTGCACCGCGGTGAGAAGATTCTTCAAAGAGAAAGGAATAAGATACGTCGAGATAAACGTCGACGTTTTCGGCGAGAGAGAACGCGAGCTTCGTGAGCGAACCGGGAGCGGTTCCGTGCCGCAAATTTTCTTCAACGAGAAGCTGATCGGAGGTTTGGTGGCGCTGAACTCGCTGCGGAACAGCGGAGAGTTCGACCGGAGAGTGGCGGAGATTGTCGCCGGGAAGGTCGCCGGCGGCGATTCGCCGGCGCCGCCGGTGTATGGGTTTGATTATGTGGAGGAAGAGCGCGCTGACGAGATGGTTGGGGTGGTTAGGGTTTTGAGGCTGAGATTGCCGATTCAGGATCGGTTGAGGAGGATGAAGATGGTGAAGAACTGCTTCCAAGGGAACGAGTTGGTGGAGGCGCTGCTTCAGAACTTCCACTGCGCGCGTAACGAGGCCGTTGAGATCGGGAAACAATTATCCAAGAAGCACTTCATCCATCATGTTTTCGGGGAAAATGACTTCGAGGAGGGAAATCACTTATACCGTTTCCTCGAGCATGAACCCTTTATCCCCAGATGCTTTAATTTTCATGGTACCACAAATGATAGTGAACCAAAGCCTGCAGATTCAATATTCGTGAGGCTTACCAAGATTATGTCTGCCATTCTTGAGTCTTATGCCTCTGATGATAGGCAACATGTTGATTATGAGGCCATTAGCAGAAGCGAAGAATTTCGTAGGTACGTAAATTTGACTCAGGATCTGCAGCGAGTGAATCTCTTGGAATTATCAGAAAACGAGAAGCTTGCATTCTTCTTAAATTTATATAATGCTATGGTCATCCATGCTGTTATTAGCGTAGGGTGTCCAGAAGGTGCAATTGATAGGAGATCCTTCTTCAGTGATTTCCAGTATCTGGTTGGAGGGCACCCTTATTCTCTTAATATGATTAAAAATGGTATCCTCAGATGCAATCGGAGGTCACCATATTCCTTAGTAAAGCCCTTTAGCACAGGAGACAAGCGGTTAGAGGTTGCTCTTATCAAGTTGAATCCGCTATTACACTTTGGACTTTGTAATGGTACAAAGTCTAGCCCAAACGTTAGGTTCTTCACACCACATAGAGTTGTAGATGAATTAAGAGGTGCTGCAAGAGAGTTCTTTGAGAACCATGGAATTGAAGTGGACCTGGAGAAGAGAACGGTTTATCTAACTCGGATTTTCAAGTGGTTCAGTGGGGATTTTGGACAAGAGAAAGAAATATTGTTGTGGATAATTAATTACTTGGATCCAAATAAAGCCGGTCTTGTGACACATCTCATGGGAGATAGTGGACCAGTTCACATCTCTTACCAGAATTATGATTGGTCAATAAATTCTTGATTAGTTTTGATTCAGCTACTGATTATTACACTTTTACCAGATTGTGGCATCTTATCTTATTCCATCCAAAAGGAGAGAGAATTTAAGTGATTTGATACCGAAACAGATTATTGTAGATGTGATATCATTTTTGCACACCACATGTGCAGACCATTTAAGTTATATGTAGAAACTCTAGATCATACATAGTTTGAATTGAGGTTTTTCTTTTCTTTTTTTTTCAGAAAAAAAAAGATCGTGGGCATTGATAAATACAAATTCTTAGGTAGGAACTGATTTTATAGAGAGTTGGCTATATGATGACGCTGTAAAAGCGCTTTGGAGTTGTAGAATGAAGTCCTGGACTTGTTTCTTCGTCTGGTGTTTAAATTCATAAAGTCTGGAGCTTTTCCCCTGTAAATATCACTGAACTTGTATGGTGTCGTGAAGGTTGTTGATGTTAATTATGTCATGAGAAAGTTTATTAGGAGAACTTGTTTGTATTAAGTTGCATATCATTCTCTTCTTACTTTCTTTTTTTCCAAGTAATTGCATATCATT
>Glyma03g02230.1 sequence type=CDS gene model=Glyma03g02230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCCGAAGAGAACGGCACGGAAATTCAAATTCAGAATCCAACACACACACAAACACAACAACATAGTAATCCTAATAATATTGCTTCACCCGAAATCCACGCTAACACCTCCAACAACCAAATTGAAATCACTTCCCATTATGGCGGTGACGACGCCGAGAGTGACAGGCATGTAACTCTAGTAGTCCACCCTCATTCCCTTCTCCCCATGCCCGTGCCACCGCAGAGTTTCAAATCCAACGAAAACGATGCCGTTTCGTCGAACGACTCGAACTTCTCCGTCGGAAGCTTCCTCCGCCAGCGCAGCAGCCACCTCTCCGCCGCGATCGTGAAGCGCGTCTCCTCTCTCCGCCAATCCATGGAAGAAAAAACCAACGACGACGAGGAAGAGAATCTCGAAGTCACGGAGTTCAGCCTTTCCGGCGTCAAGGTCACGGTGACGCCGAAGCCGGAAGAGGAAAAGGAAACCTCGTTTAAAGGACGCATCAGCTTCTTCTCGAAATCTAATTGCAGAGACTGCACCGCGGTGAGAAGATTCTTCAAAGAGAAAGGAATAAGATACGTCGAGATAAACGTCGACGTTTTCGGCGAGAGAGAACGCGAGCTTCGTGAGCGAACCGGGAGCGGTTCCGTGCCGCAAATTTTCTTCAACGAGAAGCTGATCGGAGGTTTGGTGGCGCTGAACTCGCTGCGGAACAGCGGAGAGTTCGACCGGAGAGTGGCGGAGATTGTCGCCGGGAAGGTCGCCGGCGGCGATTCGCCGGCGCCGCCGGTGTATGGGTTTGATTATGTGGAGGAAGAGCGCGCTGACGAGATGGTTGGGGTGGTTAGGGTTTTGAGGCTGAGATTGCCGATTCAGGATCGGTTGAGGAGGATGAAGATGGTGAAGAACTGCTTCCAAGGGAACGAGTTGGTGGAGGCGCTGCTTCAGAACTTCCACTGCGCGCGTAACGAGGCCGTTGAGATCGGGAAACAATTATCCAAGAAGCACTTCATCCATCATGTTTTCGGGGAAAATGACTTCGAGGAGGGAAATCACTTATACCGTTTCCTCGAGCATGAACCCTTTATCCCCAGATGCTTTAATTTTCATGGTACCACAAATGATAGTGAACCAAAGCCTGCAGATTCAATATTCGTGAGGCTTACCAAGATTATGTCTGCCATTCTTGAGTCTTATGCCTCTGATGATAGGCAACATGTTGATTATGAGGCCATTAGCAGAAGCGAAGAATTTCGTAGGTACGTAAATTTGACTCAGGATCTGCAGCGAGTGAATCTCTTGGAATTATCAGAAAACGAGAAGCTTGCATTCTTCTTAAATTTATATAATGCTATGGTCATCCATGCTGTTATTAGCGTAGGGTGTCCAGAAGGTGCAATTGATAGGAGATCCTTCTTCAGTGATTTCCAGTATCTGGTTGGAGGGCACCCTTATTCTCTTAATATGATTAAAAATGGTATCCTCAGATGCAATCGGAGGTCACCATATTCCTTAGTAAAGCCCTTTAGCACAGGAGACAAGCGGTTAGAGGTTGCTCTTATCAAGTTGAATCCGCTATTACACTTTGGACTTTGTAATGGTACAAAGTCTAGCCCAAACGTTAGGTTCTTCACACCACATAGAGTTGTAGATGAATTAAGAGGTGCTGCAAGAGAGTTCTTTGAGAACCATGGAATTGAAGTGGACCTGGAGAAGAGAACGGTTTATCTAACTCGGATTTTCAAGTGGTAA >Glyma03g02230.2 sequence type=CDS gene model=Glyma03g02230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCCGAAGAGAACGGCACGGAAATTCAAATTCAGAATCCAACACACACACAAACACAACAACATAGTAATCCTAATAATATTGCTTCACCCGAAATCCACGCTAACACCTCCAACAACCAAATTGAAATCACTTCCCATTATGGCGGTGACGACGCCGAGAGTGACAGGCATGTAACTCTAGTAGTCCACCCTCATTCCCTTCTCCCCATGCCCGTGCCACCGCAGAGTTTCAAATCCAACGAAAACGATGCCGTTTCGTCGAACGACTCGAACTTCTCCGTCGGAAGCTTCCTCCGCCAGCGCAGCAGCCACCTCTCCGCCGCGATCGTGAAGCGCGTCTCCTCTCTCCGCCAATCCATGGAAGAAAAAACCAACGACGACGAGGAAGAGAATCTCGAAGTCACGGAGTTCAGCCTTTCCGGCGTCAAGGTCACGGTGACGCCGAAGCCGGAAGAGGAAAAGGAAACCTCGTTTAAAGGACGCATCAGCTTCTTCTCGAAATCTAATTGCAGAGACTGCACCGCGGTGAGAAGATTCTTCAAAGAGAAAGGAATAAGATACGTCGAGATAAACGTCGACGTTTTCGGCGAGAGAGAACGCGAGCTTCGTGAGCGAACCGGGAGCGGTTCCGTGCCGCAAATTTTCTTCAACGAGAAGCTGATCGGAGGTTTGGTGGCGCTGAACTCGCTGCGGAACAGCGGAGAGTTCGACCGGAGAGTGGCGGAGATTGTCGCCGGGAAGGTCGCCGGCGGCGATTCGCCGGCGCCGCCGGTGTATGGGTTTGATTATGTGGAGGAAGAGCGCGCTGACGAGATGGTTGGGGTGGTTAGGGTTTTGAGGCTGAGATTGCCGATTCAGGATCGGTTGAGGAGGATGAAGATGGTGAAGAACTGCTTCCAAGGGAACGAGTTGGTGGAGGCGCTGCTTCAGAACTTCCACTGCGCGCGTAACGAGGCCGTTGAGATCGGGAAACAATTATCCAAGAAGCACTTCATCCATCATGTTTTCGGGGAAAATGACTTCGAGGAGGGAAATCACTTATACCGTTTCCTCGAGCATGAACCCTTTATCCCCAGATGCTTTAATTTTCATGGTACCACAAATGATAGTGAACCAAAGCCTGCAGATTCAATATTCGTGAGGCTTACCAAGATTATGTCTGCCATTCTTGAGTCTTATGCCTCTGATGATAGGCAACATGTTGATTATGAGGCCATTAGCAGAAGCGAAGAATTTCGTAGGTACGTAAATTTGACTCAGGATCTGCAGCGAGTGAATCTCTTGGAATTATCAGAAAACGAGAAGCTTGCATTCTTCTTAAATTTATATAATGCTATGGTCATCCATGCTGTTATTAGCGTAGGGTGTCCAGAAGGTGCAATTGATAGGAGATCCTTCTTCAGTGATTTCCAGTATCTGGTTGGAGGGCACCCTTATTCTCTTAATATGATTAAAAATGGTATCCTCAGATGCAATCGGAGGTCACCATATTCCTTAGTAAAGCCCTTTAGCACAGGAGACAAGCGGTTAGAGGTTGCTCTTATCAAGTTGAATCCGCTATTACACTTTGGACTTTGTAATGGTACAAAGTCTAGCCCAAACGTTAGGTTCTTCACACCACATAGAGTTGTAGATGAATTAAGAGGTGCTGCAAGAGAGTTCTTTGAGAACCATGGAATTGAAGTGGACCTGGAGAAGAGAACGGTTTATCTAACTCGGATTTTCAAGTGGTTCAGTGGGGATTTTGGACAAGAGAAAGAAATATTGTTGTGGATAATTAATTACTTGGATCCAAATAAAGCCGGTCTTGTGACACATCTCATGGGAGATAGTGGACCAGTTCACATCTCTTACCAGAATTATGATTGGTCAATAAATTCTTGA
>Glyma03g02230.1 sequence type=predicted peptide gene model=Glyma03g02230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSEENGTEIQIQNPTHTQTQQHSNPNNIASPEIHANTSNNQIEITSHYGGDDAESDRHVTLVVHPHSLLPMPVPPQSFKSNENDAVSSNDSNFSVGSFLRQRSSHLSAAIVKRVSSLRQSMEEKTNDDEEENLEVTEFSLSGVKVTVTPKPEEEKETSFKGRISFFSKSNCRDCTAVRRFFKEKGIRYVEINVDVFGERERELRERTGSGSVPQIFFNEKLIGGLVALNSLRNSGEFDRRVAEIVAGKVAGGDSPAPPVYGFDYVEEERADEMVGVVRVLRLRLPIQDRLRRMKMVKNCFQGNELVEALLQNFHCARNEAVEIGKQLSKKHFIHHVFGENDFEEGNHLYRFLEHEPFIPRCFNFHGTTNDSEPKPADSIFVRLTKIMSAILESYASDDRQHVDYEAISRSEEFRRYVNLTQDLQRVNLLELSENEKLAFFLNLYNAMVIHAVISVGCPEGAIDRRSFFSDFQYLVGGHPYSLNMIKNGILRCNRRSPYSLVKPFSTGDKRLEVALIKLNPLLHFGLCNGTKSSPNVRFFTPHRVVDELRGAAREFFENHGIEVDLEKRTVYLTRIFKW* >Glyma03g02230.2 sequence type=predicted peptide gene model=Glyma03g02230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSEENGTEIQIQNPTHTQTQQHSNPNNIASPEIHANTSNNQIEITSHYGGDDAESDRHVTLVVHPHSLLPMPVPPQSFKSNENDAVSSNDSNFSVGSFLRQRSSHLSAAIVKRVSSLRQSMEEKTNDDEEENLEVTEFSLSGVKVTVTPKPEEEKETSFKGRISFFSKSNCRDCTAVRRFFKEKGIRYVEINVDVFGERERELRERTGSGSVPQIFFNEKLIGGLVALNSLRNSGEFDRRVAEIVAGKVAGGDSPAPPVYGFDYVEEERADEMVGVVRVLRLRLPIQDRLRRMKMVKNCFQGNELVEALLQNFHCARNEAVEIGKQLSKKHFIHHVFGENDFEEGNHLYRFLEHEPFIPRCFNFHGTTNDSEPKPADSIFVRLTKIMSAILESYASDDRQHVDYEAISRSEEFRRYVNLTQDLQRVNLLELSENEKLAFFLNLYNAMVIHAVISVGCPEGAIDRRSFFSDFQYLVGGHPYSLNMIKNGILRCNRRSPYSLVKPFSTGDKRLEVALIKLNPLLHFGLCNGTKSSPNVRFFTPHRVVDELRGAAREFFENHGIEVDLEKRTVYLTRIFKWFSGDFGQEKEILLWIINYLDPNKAGLVTHLMGDSGPVHISYQNYDWSINS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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