Glyma03g02090 - SoyBase

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Report for Sequence Feature Glyma03g02090

Feature Type:	gene_model
Chromosome:	Gm03
Start:	1865902
stop:	1867557
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g02090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45680	AT	Annotation by Michelle Graham. TAIR10: TCP family transcription factor \| chr2:18820717-18821787 REVERSE LENGTH=356	SoyBase	E_val: 2.00E-88	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0008361	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell size	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:1900056	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of leaf senescence	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR11584	Panther	SERINE/THREONINE PROTEIN KINASE	JGI		ISS
PTHR11584:SF275	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF03634	PFAM	TCP family transcription factor	JGI		ISS
UniRef100_E4MVP2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-06-G20 n=1 Tax=Eutrema halophilum RepID=E4MVP2_THEHA	SoyBase	E_val: 4.00E-94	ISS
UniRef100_I1JKG8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JKG8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g02090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g02090

Paralog	Evidence	Comments
Glyma07g08710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g02090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g018800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g02090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g02090

Limit To All Plant Sequences

>Glyma03g02090.1   sequence type=CDS   gene model=Glyma03g02090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATGAAGCTTCTGGAGATGTTGATCTAAGGTTGGGAGAGCCCAAGGGGCCTAAAGAGGAGCCCGAGACGGAGGAGGGGTCCGCCATACGTGTGATGCCGGTGGCGGTGCACGTGCCGGCGGGGATGTCTATGTCCATGTCCAAGGCTCTGGCCCAGGCCCAGGTACAGGCCCAACCACAAAAGCGGGCCTCCATCAAAGACCGCCACACCAAAGTAGAGGGGCGAGGCAGAAGGATCCGAATGCCCGCCACGTGTGCGGCGAGGATCTTCCAGCTGACCCGAGAGCTCGGTCATAAATCCGACGGCGAAACCATCCGGTGGCTCCTCGAGCACGCCGAGCCCGCCATCATCGCCGCCACCGGCACCGGCACAGTCCCCGCCATCGCGATGTCCGTCAATGGAACGTTAAAGATTCCGACCACCTCACCTTCCGATCAAGAACCCGGAGAGCCGCCCGAGAGGAAGAAGCGCAAACGACCCGCGAATAGCGCCTACGTGGACATAAACGGCGCCGCCGTTTCGGTCTCGGCCGGGCTCGCAAGCTCTATTATTAATAATAATAACCAAAACGCAGCAACGACGATGACGACAACGATGGCAATTCCGCAACATACAGCAATTCCGTTGCCGCAAGGAATGGTTCCCGTGTGGGCCATCCCTTCAAACGCCGTCGTTCCGGCTGCAGGAGCTTTTTTTGTGGTTCCTCAAACGGCGTCGTTTCAGCATCAACCTCAGTTTTTCACCATAGCGAGACCTATCTCCGAGTTTGTCTCTTCCATGGTCACACCCGTCGTTCAGCTTCAACCAACCTCGATAAACTCTTCCACCAACACTAACTCTAACGCTTCCTCCACTGCGCCGTCGTCGAAGTCCCCGGCGAGAGCCACCGTCATGGCTCCGACAACCACCACCACCACCACGAGGCAGATGCTGAGAGATTTCTCGTTGGAGATTTACGACAAGCAGGAGCTGCAGTTCATGTCGCGCGCGTCTTCCAAGCATTGA

Predicted protein sequences of Glyma03g02090

Limit To All Plant Sequences

>Glyma03g02090.1   sequence type=predicted peptide   gene model=Glyma03g02090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADEASGDVDLRLGEPKGPKEEPETEEGSAIRVMPVAVHVPAGMSMSMSKALAQAQVQAQPQKRASIKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVNGTLKIPTTSPSDQEPGEPPERKKRKRPANSAYVDINGAAVSVSAGLASSIINNNNQNAATTMTTTMAIPQHTAIPLPQGMVPVWAIPSNAVVPAAGAFFVVPQTASFQHQPQFFTIARPISEFVSSMVTPVVQLQPTSINSSTNTNSNASSTAPSSKSPARATVMAPTTTTTTTRQMLRDFSLEIYDKQELQFMSRASSKH*

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