SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G61113 | AT | Annotation by Michelle Graham. TAIR10: Ubiquitin related modifier 1 | chr3:22614582-22615415 REVERSE LENGTH=99 | SoyBase | E_val: 8.00E-56 | ISS |
| KOG4146 | KOG | Ubiquitin-like protein | JGI | ISS | |
| PTHR14986 | Panther | RURM1 PROTEIN | JGI | ISS | |
| PF09138 | PFAM | Urm1 (Ubiquitin related modifier) | JGI | ISS | |
| UniRef100_B6ID11 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein Urm1 n=1 Tax=Rattus norvegicus RepID=B6ID11_RAT | SoyBase | E_val: 1.00E-30 | ISS |
| UniRef100_I1KIJ0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KIJ0_SOYBN | SoyBase | E_val: 6.00E-63 | ISS |
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Glyma03g02070 not represented in the dataset |
Glyma03g02070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g08690 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g018600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g02070.2 sequence type=CDS gene model=Glyma03g02070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGCTGACACTTGAATTCGGAGGGGGATTGGAACTTCTTTGTGATTCCAAGAAGATTCATAATGTCAATATTGAGCAACACAATGGAGAAGACAAGTTAATCATGAAAGATTTGCTTGCTTGGGTACGAACCAACTTGATTAAGGAGAGGCCTGAAATGTTCATGAAAGGAAATACTGTGAGACCTGGAGTTCTTGTCCTTGTGAATGATTGTGATTGGGAGCTAAGTGGTCAGCTCAACACATCACTGGAAGACAAAGATGTGGTGGTTTTTATATCAACCCTGCATGGTGGTTAG
>Glyma03g02070.2 sequence type=predicted peptide gene model=Glyma03g02070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQLTLEFGGGLELLCDSKKIHNVNIEQHNGEDKLIMKDLLAWVRTNLIKERPEMFMKGNTVRPGVLVLVNDCDWELSGQLNTSLEDKDVVVFISTLHGG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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