Glyma03g01860 - SoyBase

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Report for Sequence Feature Glyma03g01860

Feature Type:	gene_model
Chromosome:	Gm03
Start:	1606119
stop:	1614178
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g01860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00730	AT	Annotation by Michelle Graham. TAIR10: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein \| chr4:299741-304103 REVERSE LENGTH=802	SoyBase	E_val: 0	ISS
GO:0006473	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein acetylation	SoyBase	N/A	ISS
GO:0042335	GO-bp	Annotation by Michelle Graham. GO Biological Process: cuticle development	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0483	KOG	Transcription factor HEX, contains HOX and HALZ domains	JGI		ISS
PTHR24325	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24325:SF193	Panther		JGI		ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
PF01852	PFAM	START domain	JGI		ISS
UniRef100_B9RDL2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Homeobox protein, putative n=1 Tax=Ricinus communis RepID=B9RDL2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JKE1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JKE1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g01860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g01860

Paralog	Evidence	Comments
Glyma07g08340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g01860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g016600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g01860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g01860

Limit To All Plant Sequences

>Glyma03g01860.1   sequence type=CDS   gene model=Glyma03g01860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTTGGGGGTTTTTTAGACGACAAATCAGGTAGTGGCGGTGCCAGAATCAACAATTTTTCAGATATTCCTTACAATAACAACAACGTTACCAACACCACCACCACCAACAACAACAACAACGATAGAATGCCCTTTGGTGCAATCTCTCAGCCACGCCTCGTGACCACAACTCCCACTTTAGCCAAATCCATGTTCAACTCACCAGGGCTATCTCTGGCACTTCAAACGAGTATAGATGGACAAGAAGATGTGAATAGAATGGCTGAGAATAGCTTCGAACCGAACGGTTTGAGAAGAAGCCGTGAAGATGAACATGAAAGCAGATCTGGCAGCGACAACATGGACGGCGGTTCCGGCGACGAACACGACGCCGCCGACAACCCTCCGAGGAAAAAACGCTATCACCGACACACCCCTCAGCAGATACAAGAACTTGAAGCGTTGTTCAAGGAGTGTCCTCATCCAGATGAAAAGCAAAGGCTTGAACTGAGTAGAAGGCTGTGTTTGGAAACTCGTCAGGTGAAGTTTTGGTTCCAAAATCGTCGAACCCAAATGAAGACCCAGTTGGAGCGGCACGAGAACACGTTGCTGAGGCAAGAGAACGACAAGCTTCGAGCGGAGAACATGTCCATAAGGGACGCAATGAGGAACCCCATGTGCTCCAATTGCGGCGGCCTAGCCATCATCGGCGAGATTTCGCTGGAGGAGCAGCACCTCCGCATCGAGAATGCGCGCCTCAAAGACGAACTTGACCGCGTGTGTGCACTCGCGGGCAAGTTCTTGGGGCGCCCCGTTTCCTCCCTGCCGAGTCTAGAGCTCGGCATGGGAGGAAACGGGTTCGCAGGAATGCCTGCGGCAACATTGCCGCTGGCACAAGATTTCGCAATGGGTATGTCTGTGTCAATGAATAATAATGCGTTGGCTATGGTGTCTCCACCGACTAGTACTAGGCCGGCCGCGGCCGGATTCGATAGGTCGGTGGAGAGGTCGATGTTTCTCGAGCTAGCCTTGGCTGCTATGGATGAGTTGGTGAAGATGGCGCAGACTGGGGAACCTCTTTGGATGAGGAATGTTGAAGGAGGGAGGGAAATTTTGAACCATGAGGAGTACGTGAGGAACTTCACTCCTTCCATTGGTTTGAGACCCAATGGTTTTGTGTCTGAGGCCTCTAGGGAAAATGGGATGGTCATCATTAACAGCTTGGCACTTGTTGAGACTCTTATGGACTCGAATCGGTGGGCAGAGATGTTTCCTTGTATCATTGCCAGAACATCCACCACGGAAGTGATATCTAGTGGAATTAACGGAACAAGAAATGGAGCACTTCAATTAATGCATGCTGAACTTCAAGTTCTTTCGCCTTTGGTGCCGGTTCGTGAGGTGAATTTCCTACGGTTTTGCAAGCAGCACGCAGAAGGGTTGTGGGCTGTGGTGGATGTGTCCATAGATAGCATCAGAGAAAGTTCAGGAGCACCCACTTTTGTGAACGGTAGGAGGCTTCCTTCTGGTTGCGTGGTGCAAGATATGCCCAATGGTTATTCCAAGGTGACATGGGTGGAGCATGCAGAATACGAAGAAAGCCAAGTTCACCAGCTCTATAGGCCTTTGTTGAGCTCAGGCATGGGGTTTGGTGCCCAACGTTGGGTGGCTACCCTTCAACGCCAATGCGAGTGCCTTGCCATTCTAATGTCCTCAGCAGCACCCTCTCGAGACCATTCCGCAATAACAGCAGGGGGAAGGAGGAGCATGGTGAAGCTGGCGCAGCGGATGACGAACAACTTCTGCGCGGGGGTGTGCGCCTCGACGGTGCACAAGTGGAACAAGCTCAACGCCGCCGCTAACGTCGACGAGGATGTCAGGGTCATGACGCGCAAGAGCGTCGACGACCCCGGGGAGCCGCCGGGGATCGTCCTCAGCGCCGCCACCTCCGTCTGGCTACCCGTCTCCCCCCACCGCCTCTTCGACTTCCTCCGCGACGAGCGCCTCCGCAGCGAGTGGGACATCCTCTCCAACGGTGGCCCCATGCAGGAGATGGCCCACATCGCCAAGGGCCAAGACCACGGCAACGCCGTCTCTCTCCTTAGAGCCAGTGCGATAAATTCCAACCAGAGTAGCATGCTGATACTGCAGGAGACATGCATAGACGCAGCAGGGTCGCTTGTGGTGTACGCGCCGGTGGATATCCCAGCCATGCACGTGGTGATGAACGGTGGCGATTCGGCTTACGTGGCGTTGTTACCTTCAGGGTTCGCGATCGTCCCCGATGGGCCTGGGTCTCGTGGGCCTCATCAGAACGGGCCCACTTCCTCAACAACAACAACAACAAACGGCGGTGATAACGGCGTGACGCGCGTGAGTGGGTCCCTCCTAACGGTGGCGTTTCAGATCCTTGTGAATAGTCTCCCTACGGCGAAGCTCACGGTAGAGTCCGTGGAAACCGTGAACAACCTCATCTCCTGCACCGTTCAAAAGATCAAAGCCGCGCTACACTGCGAAAGTTAA

Predicted protein sequences of Glyma03g01860

Limit To All Plant Sequences

>Glyma03g01860.1   sequence type=predicted peptide   gene model=Glyma03g01860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFGGFLDDKSGSGGARINNFSDIPYNNNNVTNTTTTNNNNNDRMPFGAISQPRLVTTTPTLAKSMFNSPGLSLALQTSIDGQEDVNRMAENSFEPNGLRRSREDEHESRSGSDNMDGGSGDEHDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGLAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPVSSLPSLELGMGGNGFAGMPAATLPLAQDFAMGMSVSMNNNALAMVSPPTSTRPAAAGFDRSVERSMFLELALAAMDELVKMAQTGEPLWMRNVEGGREILNHEEYVRNFTPSIGLRPNGFVSEASRENGMVIINSLALVETLMDSNRWAEMFPCIIARTSTTEVISSGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGLWAVVDVSIDSIRESSGAPTFVNGRRLPSGCVVQDMPNGYSKVTWVEHAEYEESQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMVKLAQRMTNNFCAGVCASTVHKWNKLNAAANVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPHRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNAVSLLRASAINSNQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGPHQNGPTSSTTTTTNGGDNGVTRVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES*

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