Glyma03g01835 - SoyBase

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Report for Sequence Feature Glyma03g01835

Feature Type:	gene_model
Chromosome:	Gm03
Start:	1569996
stop:	1571445
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g01835

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_H9DXV8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BAP1 n=1 Tax=Vitis vinifera RepID=H9DXV8_VITVI	SoyBase	E_val: 2.00E-29	ISS
UniRef100_UPI0002339624	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339624 related cluster n=1 Tax=unknown RepID=UPI0002339624	SoyBase	E_val: 1.00E-117	ISS

Expression Patterns of Glyma03g01835

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g01835 not represented in the dataset	Glyma03g01835 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g01835

Paralog	Evidence	Comments
Glyma07g08300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g01835 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g016300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g01835

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g01835

Limit To All Plant Sequences

>Glyma03g01835.1   sequence type=CDS   gene model=Glyma03g01835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGAGGTCCACACACACGTTACGAAAAACACTCAAAAATTCGAAACAAAGTCATCATTTTCTCACTCTTATAAACCCCCTTCACCCCTCTTCTCTCCTTACAACAAACCAAACCACTTTAAACACACTTACAAAATCAGTTACAATTACACACTTTCACTAGCTATTACACTTTTTGAGGGTTTTTTTTTTATTCTACTATATATGGGGGCAAGCTCGGGTATAGTACTAGAAATCACAGTTATATCATGCGAAAACCTTCGTGTCACGGAGGATCCATACGTTGTCGTTAGGGCTGAGTCGTTAAATTGTTGCACCTCGAATATAGCGAAGGATTGTGGGAGCAACAAAACGAGTTTGTTTTCGTGGAACGAGAAGTTGATGCTGAACATGCCCATGCATGCAAGGTCCATCACGTTCGAGGTGCAATGCAACAGGTTCAAGGGCTTTCGACCTGCTGGGGTGGCCAGAATCGCCGTGTCGGATTTTCTCGGCGGCGCTGTGTCGGAAAACTGCATGCACGTGTTGAGTTACCGGCTGAGGGACTGGGAAGGGAAAGAAAACGGGGTGATTCATTTCACGATGAGGGTGGCGGCAGCGCCGGTGAAGGGGACGGTGGTGAGTAAGGGTTCCGGTGATGGGTTCGTGGGAATCAACGTTGGTGGCAACAAGTGCAACGAAGTTGTTGTTGGTGTACCGTTTTGA

Predicted protein sequences of Glyma03g01835

Limit To All Plant Sequences

>Glyma03g01835.1   sequence type=predicted peptide   gene model=Glyma03g01835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFEVHTHVTKNTQKFETKSSFSHSYKPPSPLFSPYNKPNHFKHTYKISYNYTLSLAITLFEGFFFILLYMGASSGIVLEITVISCENLRVTEDPYVVVRAESLNCCTSNIAKDCGSNKTSLFSWNEKLMLNMPMHARSITFEVQCNRFKGFRPAGVARIAVSDFLGGAVSENCMHVLSYRLRDWEGKENGVIHFTMRVAAAPVKGTVVSKGSGDGFVGINVGGNKCNEVVVGVPF*

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