SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45770 | AT | Annotation by Michelle Graham. TAIR10: signal recognition particle receptor protein, chloroplast (FTSY) | chr2:18851248-18853402 FORWARD LENGTH=366 | SoyBase | E_val: 0 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006605 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting | SoyBase | N/A | ISS |
| GO:0006614 | GO-bp | Annotation by Michelle Graham. GO Biological Process: SRP-dependent cotranslational protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009772 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem II | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem II assembly | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
| GO:0045038 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0051607 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to virus | SoyBase | N/A | ISS |
| GO:0005786 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle, endoplasmic reticulum targeting | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| PTHR11564 | Panther | GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS | JGI | ISS | |
| PTHR11564:SF10 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00448 | PFAM | SRP54-type protein, GTPase domain | JGI | ISS | |
| PF02881 | PFAM | SRP54-type protein, helical bundle domain | JGI | ISS | |
| UniRef100_B9RDL9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cell division protein ftsy, putative n=1 Tax=Ricinus communis RepID=B9RDL9_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JKD2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JKD2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g01770 not represented in the dataset |
Glyma03g01770 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g08240 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g015600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g01770.4 sequence type=transcript gene model=Glyma03g01770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGGGATATATATAAACCACATTGCGTTTTAAGATTTCAAAACGACGTCACTTTTGCTCACATTATCTTCATCTTCTTCTTCATCGAACTGCGGAGGCACTTAGCAGCAGTAGCAGAAATGGCTACCACTTCTGCTTCATTCGCTCGCTTCTCCGTCATATCGCGACCTTCTTCGTCAAATCCCCAATTCATCCTCTTCAACGCCGCTCCCCGAACCGGAACCCCTCATTCCCGAACCGGTTCGGCCCGGTTCAGGTGCTTGGCCGGCCAGACCGGGTTCTTCACGAAACTAGGGCGGTTGATAAAGGAGAAGGCGAAGAGCGACGTGGAGAAGCTCTTCTCGGGATTCTCCAAGACCCGCAGCAACCTCGCCGTCATCGACGAGCTTCTCCTCTATTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAACTCGAAGAGGCTCTTTTAGTGTCCGATTTTGGACCAAGAATCACTATTAAAATAGTGGAGAATTTGCGTGAGGATATATTTTCAGGGAAGCTTAAATCAGGGAATGAGATAAAGGAAGCACTGAAGAGGAACGTTTTGGAATTATTAACTTCCAAGGGGAGTAAAACTGAACTTCAACTTGGATACAGGAAGCCAGCTGTAATAATGATAGTTGGTGTTAATGGTGGAGGGAAGACTACATCTTTGGGAAAGCTGGCCTATAGATTGAAGAATGAAGGGGCTAAGATATTGATGGCAGCTGGTGATACATTTAGAGCAGCTGCTAGTGATCAGTTGGAAATATGGGCCGAAAGGACTGGGTGTGAGATTGTTGTGGCTGAATCAGAGAAAGCGAAAGCATCATCAGTGCTTTCACAGGCTGTAAAAAAGGGAAAAGAGCTAGGTTTTGATATTGTATTATGTGATACATCTGGGCGTTTACACACTAATTACAGCCTAATGGAAGAGTTGATTTCCTGTAAAAAGTCTGTTGCTAAAGTCGTTCCTGGTGCACCTAATGAGATTCTACTGGTTCTGGATGGGACTACCGGTTTGAATATGTTGCCACAAGCGAGAGAATTCAATGATGTTGTGGGTGTTACTGGTTTAGTTTTGACCAAACTGGATGGTTCTGCTAGAGGTGGCTGTGTGGTTAGCGTGGTTGATGAGCTTGGAATCCCTGTAAAATTTGTGGGTGTTGGTGAAGGTGTTGAAGACCTTCAACCTTTTGATGCGGAAGCCTTTGTCAATGCCATTTTTATGTAAACCAATATTGTGGGTTTGAATCATTTATTAGCAGAAACAGCTTGACATGGAATATTCAGAGCAACACCAGGTCACAGGAAAGATGGCACTTGATTATGGAAACCGTTATTTGGGGGTGGGGGGCAAGCATTGCGAATAAGTGTACATGATTTTGAGGTGCAGAGCTGTTGCTTGAGGAACGCTGAGTATTTTGCATGCTGTAGCTGGAAGATTCTGACGCGATGCAAATGAGAAATGGGGTTTATAATCACTCCTGTTTATGAACAGAAGGGTTTTATTGTGGTGTGCGTGTAGATGATACTTAGAAAGGAAAATGTAAACAGTAAACACATTGCTCCATTGTCTGTCAACTTCTGATTAATGACAAATTTTTATTTCTTTGACCTCTTAACGAGGTTAACCTACTATATTTATGGTGAGAAATAATCAATTATCTGTCTATGGGGAAAACAAAGCAATAAATAGTTTATTCTACTTTTTTCATGATACCACCATGATTTTGAGGAGTAAAATTGATTCTTGGTGTTATGCGAACACATTATGTGTCGTACATACATAGCCATGAACACTCTTAGTAAGAACCCATTCAAAGTTGAGCATTCGTGCACAATA
>Glyma03g01770.3 sequence type=CDS gene model=Glyma03g01770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTACCACTTCTGCTTCATTCGCTCGCTTCTCCGTCATATCGCGACCTTCTTCGTCAAATCCCCAATTCATCCTCTTCAACGCCGCTCCCCGAACCGGAACCCCTCATTCCCGAACCGGTTCGGCCCGGTTCAGGTGCTTGGCCGGCCAGACCGGGTTCTTCACGAAACTAGGGCGGTTGATAAAGGAGAAGGCGAAGAGCGACGTGGAGAAGCTCTTCTCGGGATTCTCCAAGACCCGCAGCAACCTCGCCGTCATCGACGAGCTTCTCCTCTATTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAACTCGAAGAGGCTCTTTTAGTGTCCGATTTTGGACCAAGAATCACTATTAAAATAGTGGAGAATTTGCGTGAGGATATATTTTCAGGGAAGCTTAAATCAGGGAATGAGATAAAGGAAGCACTGAAGAGGAACGTTTTGGAATTATTAACTTCCAAGGGGAGTAAAACTGAACTTCAACTTGGATACAGGAAGCCAGCTGTAATAATGATAGTTGGTGTTAATGGTGGAGGGAAGACTACATCTTTGGGAAAGCTGGCCTATAGATTGAAGAATGAAGGGGCTAAGATATTGATGGCAGCTGGTGATACATTTAGAGCAGCTGCTAGTGATCAGTTGGAAATATGGGCCGAAAGGACTGGGTGTGAGATTGTTGTGGCTGAATCAGAGAAAGCGAAAGCATCATCAGTGCTTTCACAGGCTGTAAAAAAGGGAAAAGAGCTAGGTTTTGATATTGTATTATGTGATACATCTGGGCGTTTACACACTAATTACAGCCTAATGGAAGAGTTGATTTCCTGTAAAAAGTCTGTTGCTAAAGTCGTTCCTGGTGCACCTAATGAGATTCTACTGGTTCTGGATGGGACTACCGGTTTGAATATGTTGCCACAAGCGAGAGAATTCAATGATGTTGTGGGTGTTACTGGTTTAGTTTTGACCAAACTGGATGGTTCTGCTAGAGGTGGCTGTGTGGTTAGCGTGGTTGATGAGCTTGGAATCCCTGTAAAATTTGTGGGTGTTGGTGAAGGTGTTGAAGACCTTCAACCTTTTGATGCGGAAGCCTTTGTCAATGCCATTTTTATGTAA >Glyma03g01770.4 sequence type=CDS gene model=Glyma03g01770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTACCACTTCTGCTTCATTCGCTCGCTTCTCCGTCATATCGCGACCTTCTTCGTCAAATCCCCAATTCATCCTCTTCAACGCCGCTCCCCGAACCGGAACCCCTCATTCCCGAACCGGTTCGGCCCGGTTCAGGTGCTTGGCCGGCCAGACCGGGTTCTTCACGAAACTAGGGCGGTTGATAAAGGAGAAGGCGAAGAGCGACGTGGAGAAGCTCTTCTCGGGATTCTCCAAGACCCGCAGCAACCTCGCCGTCATCGACGAGCTTCTCCTCTATTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAACTCGAAGAGGCTCTTTTAGTGTCCGATTTTGGACCAAGAATCACTATTAAAATAGTGGAGAATTTGCGTGAGGATATATTTTCAGGGAAGCTTAAATCAGGGAATGAGATAAAGGAAGCACTGAAGAGGAACGTTTTGGAATTATTAACTTCCAAGGGGAGTAAAACTGAACTTCAACTTGGATACAGGAAGCCAGCTGTAATAATGATAGTTGGTGTTAATGGTGGAGGGAAGACTACATCTTTGGGAAAGCTGGCCTATAGATTGAAGAATGAAGGGGCTAAGATATTGATGGCAGCTGGTGATACATTTAGAGCAGCTGCTAGTGATCAGTTGGAAATATGGGCCGAAAGGACTGGGTGTGAGATTGTTGTGGCTGAATCAGAGAAAGCGAAAGCATCATCAGTGCTTTCACAGGCTGTAAAAAAGGGAAAAGAGCTAGGTTTTGATATTGTATTATGTGATACATCTGGGCGTTTACACACTAATTACAGCCTAATGGAAGAGTTGATTTCCTGTAAAAAGTCTGTTGCTAAAGTCGTTCCTGGTGCACCTAATGAGATTCTACTGGTTCTGGATGGGACTACCGGTTTGAATATGTTGCCACAAGCGAGAGAATTCAATGATGTTGTGGGTGTTACTGGTTTAGTTTTGACCAAACTGGATGGTTCTGCTAGAGGTGGCTGTGTGGTTAGCGTGGTTGATGAGCTTGGAATCCCTGTAAAATTTGTGGGTGTTGGTGAAGGTGTTGAAGACCTTCAACCTTTTGATGCGGAAGCCTTTGTCAATGCCATTTTTATGTAA
>Glyma03g01770.3 sequence type=predicted peptide gene model=Glyma03g01770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATTSASFARFSVISRPSSSNPQFILFNAAPRTGTPHSRTGSARFRCLAGQTGFFTKLGRLIKEKAKSDVEKLFSGFSKTRSNLAVIDELLLYWNLADTDRVLDELEEALLVSDFGPRITIKIVENLREDIFSGKLKSGNEIKEALKRNVLELLTSKGSKTELQLGYRKPAVIMIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAESEKAKASSVLSQAVKKGKELGFDIVLCDTSGRLHTNYSLMEELISCKKSVAKVVPGAPNEILLVLDGTTGLNMLPQAREFNDVVGVTGLVLTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFM* >Glyma03g01770.4 sequence type=predicted peptide gene model=Glyma03g01770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATTSASFARFSVISRPSSSNPQFILFNAAPRTGTPHSRTGSARFRCLAGQTGFFTKLGRLIKEKAKSDVEKLFSGFSKTRSNLAVIDELLLYWNLADTDRVLDELEEALLVSDFGPRITIKIVENLREDIFSGKLKSGNEIKEALKRNVLELLTSKGSKTELQLGYRKPAVIMIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAESEKAKASSVLSQAVKKGKELGFDIVLCDTSGRLHTNYSLMEELISCKKSVAKVVPGAPNEILLVLDGTTGLNMLPQAREFNDVVGVTGLVLTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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