SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G00570 | AT | Annotation by Michelle Graham. TAIR10: NAD-dependent malic enzyme 2 | chr4:242817-246522 REVERSE LENGTH=607 | SoyBase | E_val: 0 | ISS |
| GO:0006108 | GO-bp | Annotation by Michelle Graham. GO Biological Process: malate metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004470 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: malic enzyme activity | SoyBase | N/A | ISS |
| GO:0004471 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: malate dehydrogenase (decarboxylating) activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016652 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor | SoyBase | N/A | ISS |
| GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
| GO:0050897 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding | SoyBase | N/A | ISS |
| KOG1257 | KOG | NADP+-dependent malic enzyme | JGI | ISS | |
| PTHR23406 | Panther | MALIC ENZYME-RELATED | JGI | ISS | |
| PTHR23406:SF2 | Panther | MALIC ENZYME | JGI | ISS | |
| PF00390 | PFAM | Malic enzyme, N-terminal domain | JGI | ISS | |
| PF03949 | PFAM | Malic enzyme, NAD binding domain | JGI | ISS | |
| UniRef100_I1KIF0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Malic enzyme n=1 Tax=Glycine max RepID=I1KIF0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A013 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A013 related cluster n=1 Tax=unknown RepID=UPI000233A013 | SoyBase | E_val: 0 | ISS |
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Glyma03g01680 not represented in the dataset |
Glyma03g01680 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g08110 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g014600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g01680.1 sequence type=CDS gene model=Glyma03g01680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGAAACTCGTGCGATACGCCGCCGCCTCCAACCTCGCCCGATCGCGGCGGTTCTCCGCCGCGATTCCCGGTCCGTGCATTGTTCACAAGCGCGGTGCCGACATACTCCACGATCCCTGGTTCAACAAGGATACTGGGTTTCCTTTGACTGAAAGGGACAGATTGGGGCTTCGGGGCCTCTTACCTCCTCGTGTTATATCCTTTGAGCAGCAATATGATCGCTTTATGAATTCATTCCGATCTTTGGAGAATAATACTCAGGGGCAACCAGATAAAGTCGTTTCCCTGGCAAAATGGAGGATCTTAAATAGACTGCATGACAGGAACGAGACTCTGTACTACAGAGTTCTTATTGATAATATTAAAGAGTTTGCTCCAATAATATATACCCCTACAGTTGGATTAGTGTGTCAAAATTATTCCGGGTTATTTAGGCGTCCACGTGGAATGTATTTTAGTGCCAAAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCAGCTCATGAGGTAGACATGATTGTCTTAACAGATGGAAGTCGAATTCTTGGCTTAGGTGACCTTGGAGTTCAGGGAATTGGAATCCCCATAGGAAAACTTGATGTGTATGTTGCTGCCGCTGGTATCAACCCACAAAGAATACTTCCAGTTATGCTGGATGTTGGCACCAACAATCAAAAGTTACTTGAAGATCGTCTTTATTTAGGACTTCGACAACCAAGGCTGGAAGGTGAAGAGTATCTATCAATTGTAGATGAATTTATGGAAGCTGTTCATGCTCGATGGCCCAAGGCTATTGTGCAGTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACCCTGAAAAGATATCAGAAAAGGTTTTGCATGTTTAATGATGATATACAGGGCACTGCTGGTGTTGCACTTGCTGGAATATTGGGAACTGTAAGAGCCCAAGGCCGACCATTGACTGATTTTGTGAACCAAAAGATAGTTGTGGTTGGAGCTGGGAGTGCAGGACTTGGGGTTCTAAAAATGGCCATCCAAACAGTTGCAAAGATATCTGGGTGCAGTGAATTAGCTGCCAAAAGCCAATTCTATTTGATTGATAAAGATGGTCTAGTCACAACTGAGAGGAACAGTCTAGACCCAGCTGCAGCTCCGTTTGCTAAAAATCCAAGAGACATAGAAGGGCTTACTGAGGGTGCTAGTATAATTGAAGTGGTTAAGAAGATTAGGCCACATGTGCTCCTTGGTTTGTCTGGCGTTGGTGGTATTTTCAATGAGGAGGTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCCATGTCTAACCCCACCATGAATGCTGAGTGCACTTCTATTGATGCATTTAAGCATGCTGGGGAAAATATAGTGTTTGCAAGCGGAAGCCCTTTCGAAAACGTAGATCTTGGTAATGGAAAAGTGGGTCATGTAAATCAAGCAAACAACATGTACCTCTTCCCAGGAATTGGTTTGGGAACTCTTCTGTCAGGTGCTCACCTTATAACAGATGGAATGTTGCAGGCAGCTTCTGAATGCCTTGCTTCATACATGGCCGAGGAAGATATCTTGAAAGGAATTTTGTATCCATCCGTTGATAGCATACGAGATGTTACGGCAGAGGTCGGGGCTGCTGTGCTTCGAGCAGCAGTTGAAGAAGAACTGGCAGAAGGACATGGTGATGTGGGGCCCAAGGAACTTTCCCATATGTCAAAAGATGAGGCTGTGGAGTATGTGCGAAGCAATATGTGGTATCCTGTGTATTCTCCTCTCGTTCATGAAAAATAA
>Glyma03g01680.1 sequence type=predicted peptide gene model=Glyma03g01680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWKLVRYAAASNLARSRRFSAAIPGPCIVHKRGADILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYDRFMNSFRSLENNTQGQPDKVVSLAKWRILNRLHDRNETLYYRVLIDNIKEFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAHEVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLKRYQKRFCMFNDDIQGTAGVALAGILGTVRAQGRPLTDFVNQKIVVVGAGSAGLGVLKMAIQTVAKISGCSELAAKSQFYLIDKDGLVTTERNSLDPAAAPFAKNPRDIEGLTEGASIIEVVKKIRPHVLLGLSGVGGIFNEEVLKAMRESVSTKPAIFAMSNPTMNAECTSIDAFKHAGENIVFASGSPFENVDLGNGKVGHVNQANNMYLFPGIGLGTLLSGAHLITDGMLQAASECLASYMAEEDILKGILYPSVDSIRDVTAEVGAAVLRAAVEEELAEGHGDVGPKELSHMSKDEAVEYVRSNMWYPVYSPLVHEK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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