SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G49050 | AT | Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr3:18181498-18183613 FORWARD LENGTH=477 | SoyBase | E_val: 0 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0016042 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid catabolic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0004806 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| KOG2088 | KOG | Predicted lipase/calmodulin-binding heat-shock protein | JGI | ISS | |
| PTHR21493 | Panther | CGI-141-RELATED/LIPASE CONTAINING PROTEIN | JGI | ISS | |
| PTHR21493:SF1 | Panther | CALMODULIN-BINDING HEAT-SHOCK PROTEIN | JGI | ISS | |
| PF01764 | PFAM | Lipase (class 3) | JGI | ISS | |
| PF03893 | PFAM | Lipase 3 N-terminal region | JGI | ISS | |
| UniRef100_B9RDR4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-binding heat-shock protein, putative n=1 Tax=Ricinus communis RepID=B9RDR4_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JK88 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JK88_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma03g01200 not represented in the dataset |
Glyma03g01200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g07750 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g009700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g01200.1 sequence type=CDS gene model=Glyma03g01200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAGCTATCTGTGGGCTTCCTATCCTTGAGTGTGTTTATTGTCTGGCCTGTGCTCGTTGGGTTTGGAAGAAGTGTTTGTACACTGCAGGCTATGAGAGTGAAAATTGGGGCCTGGCTACTGCACAAGAATTTGAGCCCGTGCCTCGGATCTGTCGGCTAATCTTAGCCGTCTACGAAGATGATATTCGTAACCCTCAATGGGCTCCCCAAGGAGGTTATGGCATTAATCCAGATTGGGTTATCTTGCGTAAAGACTACAACGATAACCAAGGTCGCGTTACTCCATACATGATATACCTTGATCATGATCATGCTGAAATCATACTGGCTGTTAGTGGACTCAATTTGGGGAAGGAAAGTGATTATATAGTTTTGCTTGATAACAAGCTGGGACAGGCGGAATTTCACGGTGGTTATGTTCATAACGGGTTGTTGAAGGCAGCGGGATGGGTTTTTGATGCAGAATATGAGGTTCTCAGGGAGCTAGCTGCAGAAAATCCAACTTATATGTTAATATTTACTGGGCATTCTCTAGGGGCTGGGGTGGTGGCATTGTTGACAATGCTAGCAGTCCATAATCGAGACAAATTGGGGATATCGAGAAACAAGATAAGGTGCTTTGCGATAGCTTCTCCTCGGTGTGCGTCTCTCAACTTGGCTGTAAGATATGCAGATGTGATCAATTCTGTTGTACTACAGGATGATTTTTTACCTCGAACAACTGCTGCTCTAGAAGATGTCTTCAAATCACTTTTATGTTGGCCCTGTTTATTGTGTATAATGTGCTTAAAGGATACTTGCACACTGGAGGAGAAGAAGCTTAGAGATCCAAGGCGACTGTATGCACCTGGTCGGCTCTATCACATTGTGGAACGAAAGCCCTTTAGGATAGGAAGACTTCCACCTGTCGTTAGAACAGCAGTACCTGTTGATGGGAGGTTTGAGCATTTAGTTCTTTCTTGCAATGCAACTTCTGACCATGCCATCATTTGGATAGAGAGAGAATCCCGACGGGCTCTCGATATAATGCGAGATAACGATGAGCATATGGAGATTCCAGCAGAGCAAAGGATGGAGAGGCATGAATCTATCGCTCGAGAACACAGTGAAGAGTACCATGCAGCCCTTCAGAGAGCAGTTGCTTTGGATATTCCTCAAGCATACTCACCTTCATCATATGGAACATTTCATCAAATTGATGTTGGGGAGGATTCTGGAAGATCAAGTGCCCTTGGTTCCTCCTTGTTTCACAAGAAACGAACACAAAGTTGGAATGAATTTGTTGGACGCCTGTTTGATGTGGATGACGCTGGTCATATGGTGTTCAAAAAGACATCTCCATGA
>Glyma03g01200.1 sequence type=predicted peptide gene model=Glyma03g01200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSAICGLPILECVYCLACARWVWKKCLYTAGYESENWGLATAQEFEPVPRICRLILAVYEDDIRNPQWAPQGGYGINPDWVILRKDYNDNQGRVTPYMIYLDHDHAEIILAVSGLNLGKESDYIVLLDNKLGQAEFHGGYVHNGLLKAAGWVFDAEYEVLRELAAENPTYMLIFTGHSLGAGVVALLTMLAVHNRDKLGISRNKIRCFAIASPRCASLNLAVRYADVINSVVLQDDFLPRTTAALEDVFKSLLCWPCLLCIMCLKDTCTLEEKKLRDPRRLYAPGRLYHIVERKPFRIGRLPPVVRTAVPVDGRFEHLVLSCNATSDHAIIWIERESRRALDIMRDNDEHMEIPAEQRMERHESIAREHSEEYHAALQRAVALDIPQAYSPSSYGTFHQIDVGEDSGRSSALGSSLFHKKRTQSWNEFVGRLFDVDDAGHMVFKKTSP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
