Glyma03g01121 - SoyBase

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Report for Sequence Feature Glyma03g01121

Feature Type:	gene_model
Chromosome:	Gm03
Start:	858228
stop:	863777
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g01121

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G01690	AT	Annotation by Michelle Graham. TAIR10: putative recombination initiation defects 3 \| chr1:249242-252221 FORWARD LENGTH=449	SoyBase	E_val: 2.00E-61	ISS
GO:0009553	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac development	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0042138	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation	SoyBase	N/A	ISS
GO:0051026	GO-bp	Annotation by Michelle Graham. GO Biological Process: chiasma assembly	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7LBR5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein PAIR1 n=1 Tax=Medicago truncatula RepID=G7LBR5_MEDTR	SoyBase	E_val: 1.00E-151	ISS
UniRef100_G7LBR5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Protein PAIR1 n=1 Tax=Medicago truncatula RepID=G7LBR5_MEDTR	SoyBase	E_val: 1.00E-151	ISS

Expression Patterns of Glyma03g01121

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g01121 not represented in the dataset	Glyma03g01121 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g01121

Paralog	Evidence	Comments
Glyma07g07665	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g01121 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g008900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g01121

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g01121

Limit To All Plant Sequences

>Glyma03g01121.1   sequence type=CDS   gene model=Glyma03g01121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATCAACAGAGCCTGCGATCTCAATTCCATTTCTGTCTTTCCTCCTCCTCTCATTCATCGAAGGAAAGCGAACAATGTAACGAGTGGATTGCAAGCGAATCACTCTCAGCATCACTCGCAGCCATCTCAGCAGTCGCTTTCTCAGGGAATTTCGTCTCAGCACGGATTGCTGTCACATTTCTCCCAAAACTCTCTCGACGAGGCCGTCACGACGAACGATCAGAGAGTTGGTTCTCAAGAACATGAAAACTCTTTGAGGAGGATGTCTAGCTTCTCCCGACCTACATATTCACGGGAAGAGAGTCAAGCACCTAACTCAAGATCTTCGTCCAATCTAATGCTCAAATGGCATTCTGCTGATCATAAAAGTCAGTTAAGTGAAGGACTTGAACACCGAATTGGCATAATGGAAACTTCATTGGGCAGATTCACAATGATCTTGGATTCTGTTCAAAGTGATGTAATGCAAGTAAACAAAGGAACAAAGGAAATTACTTTGGAGGTGGAATGCATAAGGCAGAAGTTGATTGCTCAGGATAACTCACTTCAGTTAATGACTAAAGGACAAGAAGAAATTAAAGCAATCATTGAAGGGAGCCTGAAATCTTTAGCTGAACAAATGAGCCATGTTTCAAAGAAAGAGAAGTTACGGGAAGTATATTTGGCGGTTTCTGCGTTGCCTCAGCTAATTGAAGCCTCTCTGCAAAACGTACAAAATGATCTCCGTAACATCACCAAGGAAATGCAGGAAATTTCTTGCAATCTAAAAAGCGTCAACCAAAAGGATCTGGCGCCGACCACTTTGTCTTCAAAGAGTATTACCAAACAGATTACCACACCGAAAATGCGTCAGCCTCTTGCTAATGAGGCGAAGGTGAGCATACAAGCTACTGTAGCTCCAGAGGTGGAAATGGGAGGCTGGAAGCCAGTAAAAAAAGAAAGAGTCCCTTTTTCAGATAGAAGAAAATATGATATGGTGCAAAAGAAAAAAGAACCACACATTGAGAAGTATATAAGGGGAGGTAGAGACTGTGCTATTGTCATAGAATCTGATGAGGATATTGATGGAGGTTTTTCCTGCTTGTTCCAAGAAAACTCAGGAGAAGACCTTCTTGGCAACTTGACCAAGGAAACAGAGGAAGAAACTGAGCGAATTTTGCGGAAAGCAAGGAGGCGCAAGAGGAAAGTATTTTAA

Predicted protein sequences of Glyma03g01121

Limit To All Plant Sequences

>Glyma03g01121.1   sequence type=predicted peptide   gene model=Glyma03g01121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKINRACDLNSISVFPPPLIHRRKANNVTSGLQANHSQHHSQPSQQSLSQGISSQHGLLSHFSQNSLDEAVTTNDQRVGSQEHENSLRRMSSFSRPTYSREESQAPNSRSSSNLMLKWHSADHKSQLSEGLEHRIGIMETSLGRFTMILDSVQSDVMQVNKGTKEITLEVECIRQKLIAQDNSLQLMTKGQEEIKAIIEGSLKSLAEQMSHVSKKEKLREVYLAVSALPQLIEASLQNVQNDLRNITKEMQEISCNLKSVNQKDLAPTTLSSKSITKQITTPKMRQPLANEAKVSIQATVAPEVEMGGWKPVKKERVPFSDRRKYDMVQKKKEPHIEKYIRGGRDCAIVIESDEDIDGGFSCLFQENSGEDLLGNLTKETEEETERILRKARRRKRKVF*

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