Glyma03g01000 - SoyBase

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Report for Sequence Feature Glyma03g01000

Feature Type:	gene_model
Chromosome:	Gm03
Start:	721727
stop:	724279
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g01000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G03660	AT	Annotation by Michelle Graham. TAIR10: WUSCHEL related homeobox 11 \| chr3:889515-892162 REVERSE LENGTH=268	SoyBase	E_val: 3.00E-69	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0016114	GO-bp	Annotation by Michelle Graham. GO Biological Process: terpenoid biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PTHR24326	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24326:SF107	Panther		JGI		ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
UniRef100_B9SI52	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein WUSCHEL, putative n=2 Tax=Malpighiales RepID=B9SI52_RICCO	SoyBase	E_val: 8.00E-81	ISS
UniRef100_I1JK62	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JK62_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g01000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g01000

Paralog	Evidence	Comments
Glyma19g29660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g01000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g007600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g01000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g01000

Limit To All Plant Sequences

>Glyma03g01000.1   sequence type=CDS   gene model=Glyma03g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATCAGGGTCAGCAGCAGCAGCAGCAGCATCAAGTGGAGGCAAAGAGTCCAAGGCAAGGCACCGAGAGGAGTGAAGCGGTTCGGTCAAGGTGGACTCCAAAGCCAGAACAAATCCTCATACTCGAGTCCATCTTCAACAGTGGCATGGTTAACCCTCCAAAGGACGAAACCGTCAGAATAAGGAAGCTTCTCGAGAAATTCGGCGCCGTCGGCGACGCCAACGTCTTCTACTGGTTCCAGAACCGCCGCTCCAGATCCCGCCGCCGCCAGCGCCAGATGATGCAACAGCAGGCTACTGCCACCGCCACCGCCACCGTCACCACCTTTGATCACCCTCAGCCTCAGACTCAGACTCTTGTTAATGTTGGTGGTGCAATTCCACATGATCACCACACCTTGGGAAACCTTGTTGTTGCAACTGAAAGTAGTGCTACTTCAACCATGGGTTTTGGTTGTTCTTCTCAATCTTCTTATGGTTTTCTTGGTTCCTCTTCTTCTTCTTCTTCTTGTGGTGGTGGTGTAATTGGTGGCCAACAACAAGGCATGGATGGTTTCTTCTCATCGGTTTCTTCTCATCAAATGGGTTTCCCTGATCACCACCACACTTCACCTGCTTCATCAGCTTTGTACCCTCCTCTTGATCCAAATTTGACCTACCAGGCTGGATATGGGGGCCCTAATATTTCAGGATTCATTACAGTGTTTATCAATGGAATTGCAACTGAACTTCCAAAGGGGCCAATAGACCTCAAAACCGTGTTTGGAGAAGATGTAATGTTAGTTCATTCCTCTGGAGTTCCAATTCCCACCAATGAATTTGGGTTCTTGATGCATAACCTTCAACATGGCGATAGCTACTTTCTGGTATCAAAGCCAACATAA

Predicted protein sequences of Glyma03g01000

Limit To All Plant Sequences

>Glyma03g01000.1   sequence type=predicted peptide   gene model=Glyma03g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDQGQQQQQQHQVEAKSPRQGTERSEAVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQRQMMQQQATATATATVTTFDHPQPQTQTLVNVGGAIPHDHHTLGNLVVATESSATSTMGFGCSSQSSYGFLGSSSSSSSCGGGVIGGQQQGMDGFFSSVSSHQMGFPDHHHTSPASSALYPPLDPNLTYQAGYGGPNISGFITVFINGIATELPKGPIDLKTVFGEDVMLVHSSGVPIPTNEFGFLMHNLQHGDSYFLVSKPT*

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