Glyma03g00910 - SoyBase

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Report for Sequence Feature Glyma03g00910

Feature Type:	gene_model
Chromosome:	Gm03
Start:	620288
stop:	623955
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g00910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G45400	AT	Annotation by Michelle Graham. TAIR10: exostosin family protein \| chr3:16651963-16653479 FORWARD LENGTH=475	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
KOG1021	KOG	Acetylglucosaminyltransferase EXT1/exostosin 1	JGI		ISS
PTHR11062	Panther	EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED	JGI		ISS
PTHR11062:SF30	Panther		JGI		ISS
PF03016	PFAM	Exostosin family	JGI		ISS
UniRef100_B9SY79	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SY79_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JK55	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JK55_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g00910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g00910

Paralog	Evidence	Comments
Glyma19g29730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g00910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g006800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g00910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g00910

Limit To All Plant Sequences

>Glyma03g00910.1   sequence type=CDS   gene model=Glyma03g00910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGAGAGAACCGTGTCTGCTGGCTCCACCATCAAGGTTGTTTCCAAGAAGTCCTTGTGTGGATTCTTCACAATGACAACGTTGTTGTTCATGTTGTCATGGCTGTTCGTTCTTCGTTCCACTCGCTCCGAGGCTTCGCCTAACTCAAATCTTTTCTCTTCCTTCAGCAACTCAGATTTTGATCAGTCAGTGCAGCAGCAAAAACACATGGAAGAAGAAGTTGAACCATCTAATTTTGGCAATAGAGCAATACTTGTAAACAATATAGAGGCAACAACAACACATGATGAGAAACAACAACAACAACAACAACAACTAGGTGTGAAATGCAAAGCACATGACAAGGCTGTTCTAAGAGTTTTCATGTATGATTTGCCTCCTGAGTTTCATTTTGGACTATTGGATTGGAAGCCTGAAGAGAATGTTAACAGTGTTTGGCCTGATATCAAAACCAAAGCACCCCATTACCCTGGAGGGTTGAATTCGCAGCATAGTATAGAGTATTGGCTCACTTTGGATCTTCTTGCTTCAGAACTACCTGAAGCTGAAGCACAATCTAATGCTAGGAGTGTAATCAGAGTTAGAAACTCTAGTGAATCTGATGTGGTATTTGTGCCATTCTTTTCCTCTCTTTGTTATAACCGGTTCTCCTCCAAAACTAATCCACATGAGAAGAGGAGCATGAACAAGGTGCTGCAAGAAAAATTGGTGAAGTATGTGACGGAACAAGAGGAATGGAAGAGGTCTGGGGGGAAGGATCATGTGATCGTGGCTCACCATCCAAATAGTATGTTGGATGCAAGAATGAAGTTGTGGCCTGGCACTTTCATACTCTCAGATTTTGGGAGGTATCCTACAAACATAGCCAATGTTGAGAAAGATGTGATTGCACCTTACAAACATGTGGTTGGATCCTATGATAATGATCAGTCCAGCTTCGATAGCCGTCCAACATTGCTGTACTTCCAAGGAGCTATATACAGAAAAGATGGAGGCCATGTACGGCACGAGCTATACTATCTTGTTAAAAATGAAAAGGACGTGCATTTTTCATTTGGGAATGTTGAAAAGGGTGGTGTGAGAAATGCAGCAGAAGGCATGCGTTCTTCCAAGTTCTGCCTGAACATAGCCGGCGACACCCCTTCGTCGAACCGGCTTTTCGATGCCATTGCCAGCCACTGCGTCCCCGTTATCATCAGCGACGAAATCGAGCTTCCCTACGAGGATGTCATTGACTACTCTCAGTTCTGCGTGTTCGTGCGCACAAGAGATGCTCTCAAGAAGAGGTATCTTATAAACTTCATCAGGAGCATTGGGAAGGAAGAGTGGACAAGAATGTGGAACAGGTTGAAAGAGGTTGAGAGTTTCTTTGAGTTTCAGTTCCCATCTAAGGAGGGTGATGCTGTCCAAATGATTTGGAAGGCTGTTGCACGTAAAGTTCCTTTCATGAAGCTCAAGACTAATAGGTCTAGGAGATTTCTGAGGTCTCTTTATGGGAATCACAATTTTTGGTGA

Predicted protein sequences of Glyma03g00910

Limit To All Plant Sequences

>Glyma03g00910.1   sequence type=predicted peptide   gene model=Glyma03g00910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVERTVSAGSTIKVVSKKSLCGFFTMTTLLFMLSWLFVLRSTRSEASPNSNLFSSFSNSDFDQSVQQQKHMEEEVEPSNFGNRAILVNNIEATTTHDEKQQQQQQQLGVKCKAHDKAVLRVFMYDLPPEFHFGLLDWKPEENVNSVWPDIKTKAPHYPGGLNSQHSIEYWLTLDLLASELPEAEAQSNARSVIRVRNSSESDVVFVPFFSSLCYNRFSSKTNPHEKRSMNKVLQEKLVKYVTEQEEWKRSGGKDHVIVAHHPNSMLDARMKLWPGTFILSDFGRYPTNIANVEKDVIAPYKHVVGSYDNDQSSFDSRPTLLYFQGAIYRKDGGHVRHELYYLVKNEKDVHFSFGNVEKGGVRNAAEGMRSSKFCLNIAGDTPSSNRLFDAIASHCVPVIISDEIELPYEDVIDYSQFCVFVRTRDALKKRYLINFIRSIGKEEWTRMWNRLKEVESFFEFQFPSKEGDAVQMIWKAVARKVPFMKLKTNRSRRFLRSLYGNHNFW*

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