SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G08680 | AT | Annotation by Michelle Graham. TAIR10: ARF GAP-like zinc finger-containing protein ZIGA4 | chr1:2762820-2768387 FORWARD LENGTH=649 | SoyBase | E_val: 4.00E-164 | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG0702 | KOG | Predicted GTPase-activating protein | JGI | ISS | |
| KOG0703 | KOG | Predicted GTPase-activating protein | JGI | ISS | |
| PTHR23180 | Panther | CENTAURIN/ARF | JGI | ISS | |
| PTHR23180:SF87 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01412 | PFAM | Putative GTPase activating protein for Arf | JGI | ISS | |
| UniRef100_B9SY84 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: HIV-1 rev binding protein, hrbl, putative n=1 Tax=Ricinus communis RepID=B9SY84_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233933A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233933A related cluster n=1 Tax=unknown RepID=UPI000233933A | SoyBase | E_val: 0 | ISS |
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Glyma03g00850 not represented in the dataset |
Glyma03g00850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g006000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g00850.2 sequence type=transcript gene model=Glyma03g00850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTATCCGAGTAATGTGGTTACTTCGAAGTTGAAACCTTTGGCGCTTAAGTGGATTGGTTGGATTGAAAAGAAGCTTTGAATTGCTTGAGGAAGTTGAGGGTCCACAATATGTTTGTGCGAATTTCTGGACCTTTGTTTGCATGACCTGCAGTGGTATACATCGTGAGTTTACCCATCGTGTGAAGTCTGTATCTATGGCAATGTTCACGTCACAAGAAGTTGATGCTCTTCAAAATGGGGGTAACCAGCGTGCAAGGGAAATACATTTGAAAAATTGGGACTTCCAAAGGCAGCGGTTGCCAGATAGCAGTAATGTTGATAAAGTAAGAGAGTTTATAAGGAATGTATATGTGGATCAAAGATATGCAGCAGCAAAGTCTTCTGATAAGCCTCCAAGAGATGTGCAGAGTCCTATTGAAGATGATACAAGGCGTGCCAGTTCCTATCACTCATATTCTCAAAGTCCTCCATATGATTACCAATATGAAGATCGACGATATGGAAAACAAGCAGCTGCATTGACCAGGAAGCCTGGTTCTGATAAAGTTTGCTATGAAAGAAAGATAAGTAGTATTATCTTTAGTCCTGGTCGGTTCAGCGATCATGCGTATGATGACAGATTTGCAAATGAGAGATCTGGTCCAAGAATCTCCGACTTTTCTATGTCTAATGGTGGTGAGCAATTTAAAACTGATTTTCAGCATTCTGGTACCTGTTCAAGTAAAGATGTATTGCCTCATGTAACAAATACATCTCTGGAAACAAACTCCAAAAGAGATGCAGATGGAATTCATCGTCCACAGAGAACTACCTCATTGGGATCAACAGACAGCAACCTGTCATCCTTAAGATCTTACAGTTCTGGTGGTTTAGTTGATTTTTTCTCAGAACCATTCCAAGCTTCTGGACCCCATCAAAATAAAGTGTCTTGTACTCCACAACCATCTGATCTGGGAAGTACTGTTAGTTCAGATCTTTCTGAGGCACCAGTGGCACCCAAACCATTTTCTTCATCTGCTTCATCTATTGACCTTTTCCAGTTACCAGCTGCACCCTCTCAGGCTTCATCAGTGGATCTGTTTCAGTCATCTGCTTTATCTGCAATTGCATCTTTCAATGAGCGTCAACCTTTGAAAACATCACAATCCTCATCTGTTGACTTTATGGACCTTTCTCAGCAGCCATCTGCTGCAACCTCAAGTGAGAAGTCACTGGAGTTGTCTGTCCCAGAAAATGAAGGATGGGCAACATTTGATATGCCTCAGCACACATCTACTGCACAAGTAGAAATTCAACCAGCAGTACAGGAAAAATTTGATCCATTTTTGAACTTAAATGCAAATACGCTATGGCCATGTTTTGAAACTTCTAGTGCTAGCGCTCTTTCTTCAGTTACATCTAATTTATGGCGTGATGTCACATGGACCAGAGAAGAACAAGTTTCTGTTATGGCATCAAACTCTCAATCATGGAGTGCATTTAAGGATCCTGCTAACTCTGTTCCTGTGGATGCTCTTATTACTCAAGGATCACAAATGCATGATCTTCCGTCAACTGATGATCAGTTTTTGGATTTAAGAGCTTCTGAGGGATCCAATAAAGATGGTATGCACCGCATTGACCCTGTTGCTGGGTTTGATCATGATCTTTCATCGCATTTTGTTAGTGGCTCACCATGTCCTCCATCTGCATTTCCTCCAATGGGAGAGGTTCAGCCTAATGAAATCAACCATAAATCAACTAATCCATTTGATTATCCTTTTGATTCAGATGTAGAACATAATAATACGTGTCAATTGCAATTCCTTGACGTCAGCTCTCTACAAGCAGCTCTGCCAGATTCCCAGCTAACACCCACCTTCCAAAGTGGTATTGCTGAACCATGGCTCCCTCAGAATACACTGAACCCTTATTTCTCCTCTGCAGGACAAGGTGGTTTGACATTCATGGCTGCACCACCACCAAGTTCTCAAATACTGAACATCCAGACGAATGAACCGGTTGCTTCTGTTGGGGGTAATCCCTTTGCATAGGATTAGACTGTAAAATGTGGAAACATCATTCATAGGGAAATTTATGCTTGCTCTTGACATAGATTTTAATGCTTTTATTCTGGTCAGATTAAAATGTTGCCCATTACTTCCACGCCAAGGAAGTACTTGTAATTCATAGTCACTGCCATATGCAGGCCATGCGTTTGTAATTTTGTAATTGAATGGCATTGTAGTTATTGACAAAAAACAATTACATTGTAGTTAGAACTCTTAAAATTGCTTAATTAGTGTTGGGGCAGGTATGAACGCAACCAATTTGGATATAGTGCGTGTTTGGAAATAGATGGCAAAAAAGCTTTAAAGGCAAAAGTACTTTTGCAAAAGGATCAAAATCTTTGTTTTTGTTTTCAATTTGCTGTTGGATTGTATTGGAACACGTGTTGCAACAATTTCAATTACAAATCAAACATGCACATAGATTGTGAGATTTTTGAGGTTTGACAATGTAATTGTAATTGGATTAGTTTAAGAGTGTCTGA
>Glyma03g00850.1 sequence type=CDS gene model=Glyma03g00850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGCAGAAAGGAGGAAGAGAGGAACGAAAAAATCATCAGAGGTCTCATGAAGCTTCCTCCCAATCGAAGATGCATCAACTGTAATAGTCTGGGTCCACAATATGTTTGTGCGAATTTCTGGACCTTTGTTTGCATGACCTGCAGTGGTATACATCGTGAGTTTACCCATCGTGTGAAGTCTGTATCTATGGCAATGTTCACGTCACAAGAAGTTGATGCTCTTCAAAATGGGGGTAACCAGCGTGCAAGGGAAATACATTTGAAAAATTGGGACTTCCAAAGGCAGCGGTTGCCAGATAGCAGTAATGTTGATAAAGTAAGAGAGTTTATAAGGAATGTATATGTGGATCAAAGATATGCAGCAGCAAAGTCTTCTGATAAGCCTCCAAGAGATGTGCAGAGTCCTATTGAAGATGATACAAGGCGTGCCAGTTCCTATCACTCATATTCTCAAAGTCCTCCATATGATTACCAATATGAAGATCGACGATATGGAAAACAAGCAGCTGCATTGACCAGGAAGCCTGGTTCTGATAAAGTTTGCTATGAAAGAAAGATAAGTAGTATTATCTTTAGTCCTGGTCGGTTCAGCGATCATGCGTATGATGACAGATTTGCAAATGAGAGATCTGGTCCAAGAATCTCCGACTTTTCTATGTCTAATGGTGGTGAGCAATTTAAAACTGATTTTCAGCATTCTGGTACCTGTTCAAGTAAAGATGTATTGCCTCATGTAACAAATACATCTCTGGAAACAAACTCCAAAAGAGATGCAGATGGAATTCATCGTCCACAGAGAACTACCTCATTGGGATCAACAGACAGCAACCTGTCATCCTTAAGATCTTACAGTTCTGGTGGTTTAGTTGATTTTTTCTCAGAACCATTCCAAGCTTCTGGACCCCATCAAAATAAAGTGTCTTGTACTCCACAACCATCTGATCTGGGAAGTACTGTTAGTTCAGATCTTTCTGAGGCACCAGTGGCACCCAAACCATTTTCTTCATCTGCTTCATCTATTGACCTTTTCCAGTTACCAGCTGCACCCTCTCAGGCTTCATCAGTGGATCTGTTTCAGTCATCTGCTTTATCTGCAATTGCATCTTTCAATGAGCGTCAACCTTTGAAAACATCACAATCCTCATCTGTTGACTTTATGGACCTTTCTCAGCAGCCATCTGCTGCAACCTCAAGTGAGAAGTCACTGGAGTTGTCTGTCCCAGAAAATGAAGGATGGGCAACATTTGATATGCCTCAGCACACATCTACTGCACAAGTAGAAATTCAACCAGCAGTACAGGAAAAATTTGATCCATTTTTGAACTTAAATGCAAATACGCTATGGCCATGTTTTGAAACTTCTAGTGCTAGCGCTCTTTCTTCAGTTACATCTAATTTATGGCGTGATGTCACATGGACCAGAGAAGAACAAGTTTCTGTTATGGCATCAAACTCTCAATCATGGAGTGCATTTAAGGATCCTGCTAACTCTGTTCCTGTGGATGCTCTTATTACTCAAGGATCACAAATGCATGATCTTCCGTCAACTGATGATCAGTTTTTGGATTTAAGAGCTTCTGAGGGATCCAATAAAGATGGTATGCACCGCATTGACCCTGTTGCTGGGTTTGATCATGATCTTTCATCGCATTTTGTTAGTGGCTCACCATGTCCTCCATCTGCATTTCCTCCAATGGGAGAGGTTCAGCCTAATGAAATCAACCATAAATCAACTAATCCATTTGATTATCCTTTTGATTCAGATGTAGAACATAATAATACGTGTCAATTGCAATTCCTTGACGTCAGCTCTCTACAAGCAGCTCTGCCAGATTCCCAGCTAACACCCACCTTCCAAAGTGGTATTGCTGAACCATGGCTCCCTCAGAATACACTGAACCCTTATTTCTCCTCTGCAGGACAAGGTGGTTTGACATTCATGGCTGCACCACCACCAAGTTCTCAAATACTGAACATCCAGACGAATGAACCGGTTGCTTCTGTTGGGGGTAATCCCTTTGCATAG >Glyma03g00850.2 sequence type=CDS gene model=Glyma03g00850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCTGCAGTGGTATACATCGTGAGTTTACCCATCGTGTGAAGTCTGTATCTATGGCAATGTTCACGTCACAAGAAGTTGATGCTCTTCAAAATGGGGGTAACCAGCGTGCAAGGGAAATACATTTGAAAAATTGGGACTTCCAAAGGCAGCGGTTGCCAGATAGCAGTAATGTTGATAAAGTAAGAGAGTTTATAAGGAATGTATATGTGGATCAAAGATATGCAGCAGCAAAGTCTTCTGATAAGCCTCCAAGAGATGTGCAGAGTCCTATTGAAGATGATACAAGGCGTGCCAGTTCCTATCACTCATATTCTCAAAGTCCTCCATATGATTACCAATATGAAGATCGACGATATGGAAAACAAGCAGCTGCATTGACCAGGAAGCCTGGTTCTGATAAAGTTTGCTATGAAAGAAAGATAAGTAGTATTATCTTTAGTCCTGGTCGGTTCAGCGATCATGCGTATGATGACAGATTTGCAAATGAGAGATCTGGTCCAAGAATCTCCGACTTTTCTATGTCTAATGGTGGTGAGCAATTTAAAACTGATTTTCAGCATTCTGGTACCTGTTCAAGTAAAGATGTATTGCCTCATGTAACAAATACATCTCTGGAAACAAACTCCAAAAGAGATGCAGATGGAATTCATCGTCCACAGAGAACTACCTCATTGGGATCAACAGACAGCAACCTGTCATCCTTAAGATCTTACAGTTCTGGTGGTTTAGTTGATTTTTTCTCAGAACCATTCCAAGCTTCTGGACCCCATCAAAATAAAGTGTCTTGTACTCCACAACCATCTGATCTGGGAAGTACTGTTAGTTCAGATCTTTCTGAGGCACCAGTGGCACCCAAACCATTTTCTTCATCTGCTTCATCTATTGACCTTTTCCAGTTACCAGCTGCACCCTCTCAGGCTTCATCAGTGGATCTGTTTCAGTCATCTGCTTTATCTGCAATTGCATCTTTCAATGAGCGTCAACCTTTGAAAACATCACAATCCTCATCTGTTGACTTTATGGACCTTTCTCAGCAGCCATCTGCTGCAACCTCAAGTGAGAAGTCACTGGAGTTGTCTGTCCCAGAAAATGAAGGATGGGCAACATTTGATATGCCTCAGCACACATCTACTGCACAAGTAGAAATTCAACCAGCAGTACAGGAAAAATTTGATCCATTTTTGAACTTAAATGCAAATACGCTATGGCCATGTTTTGAAACTTCTAGTGCTAGCGCTCTTTCTTCAGTTACATCTAATTTATGGCGTGATGTCACATGGACCAGAGAAGAACAAGTTTCTGTTATGGCATCAAACTCTCAATCATGGAGTGCATTTAAGGATCCTGCTAACTCTGTTCCTGTGGATGCTCTTATTACTCAAGGATCACAAATGCATGATCTTCCGTCAACTGATGATCAGTTTTTGGATTTAAGAGCTTCTGAGGGATCCAATAAAGATGGTATGCACCGCATTGACCCTGTTGCTGGGTTTGATCATGATCTTTCATCGCATTTTGTTAGTGGCTCACCATGTCCTCCATCTGCATTTCCTCCAATGGGAGAGGTTCAGCCTAATGAAATCAACCATAAATCAACTAATCCATTTGATTATCCTTTTGATTCAGATGTAGAACATAATAATACGTGTCAATTGCAATTCCTTGACGTCAGCTCTCTACAAGCAGCTCTGCCAGATTCCCAGCTAACACCCACCTTCCAAAGTGGTATTGCTGAACCATGGCTCCCTCAGAATACACTGAACCCTTATTTCTCCTCTGCAGGACAAGGTGGTTTGACATTCATGGCTGCACCACCACCAAGTTCTCAAATACTGAACATCCAGACGAATGAACCGGTTGCTTCTGTTGGGGGTAATCCCTTTGCATAG
>Glyma03g00850.1 sequence type=predicted peptide gene model=Glyma03g00850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCANFWTFVCMTCSGIHREFTHRVKSVSMAMFTSQEVDALQNGGNQRAREIHLKNWDFQRQRLPDSSNVDKVREFIRNVYVDQRYAAAKSSDKPPRDVQSPIEDDTRRASSYHSYSQSPPYDYQYEDRRYGKQAAALTRKPGSDKVCYERKISSIIFSPGRFSDHAYDDRFANERSGPRISDFSMSNGGEQFKTDFQHSGTCSSKDVLPHVTNTSLETNSKRDADGIHRPQRTTSLGSTDSNLSSLRSYSSGGLVDFFSEPFQASGPHQNKVSCTPQPSDLGSTVSSDLSEAPVAPKPFSSSASSIDLFQLPAAPSQASSVDLFQSSALSAIASFNERQPLKTSQSSSVDFMDLSQQPSAATSSEKSLELSVPENEGWATFDMPQHTSTAQVEIQPAVQEKFDPFLNLNANTLWPCFETSSASALSSVTSNLWRDVTWTREEQVSVMASNSQSWSAFKDPANSVPVDALITQGSQMHDLPSTDDQFLDLRASEGSNKDGMHRIDPVAGFDHDLSSHFVSGSPCPPSAFPPMGEVQPNEINHKSTNPFDYPFDSDVEHNNTCQLQFLDVSSLQAALPDSQLTPTFQSGIAEPWLPQNTLNPYFSSAGQGGLTFMAAPPPSSQILNIQTNEPVASVGGNPFA* >Glyma03g00850.2 sequence type=predicted peptide gene model=Glyma03g00850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTCSGIHREFTHRVKSVSMAMFTSQEVDALQNGGNQRAREIHLKNWDFQRQRLPDSSNVDKVREFIRNVYVDQRYAAAKSSDKPPRDVQSPIEDDTRRASSYHSYSQSPPYDYQYEDRRYGKQAAALTRKPGSDKVCYERKISSIIFSPGRFSDHAYDDRFANERSGPRISDFSMSNGGEQFKTDFQHSGTCSSKDVLPHVTNTSLETNSKRDADGIHRPQRTTSLGSTDSNLSSLRSYSSGGLVDFFSEPFQASGPHQNKVSCTPQPSDLGSTVSSDLSEAPVAPKPFSSSASSIDLFQLPAAPSQASSVDLFQSSALSAIASFNERQPLKTSQSSSVDFMDLSQQPSAATSSEKSLELSVPENEGWATFDMPQHTSTAQVEIQPAVQEKFDPFLNLNANTLWPCFETSSASALSSVTSNLWRDVTWTREEQVSVMASNSQSWSAFKDPANSVPVDALITQGSQMHDLPSTDDQFLDLRASEGSNKDGMHRIDPVAGFDHDLSSHFVSGSPCPPSAFPPMGEVQPNEINHKSTNPFDYPFDSDVEHNNTCQLQFLDVSSLQAALPDSQLTPTFQSGIAEPWLPQNTLNPYFSSAGQGGLTFMAAPPPSSQILNIQTNEPVASVGGNPFA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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