Glyma03g00740 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g00740

Feature Type:	gene_model
Chromosome:	Gm03
Start:	444917
stop:	451517
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g00740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G03610	AT	Annotation by Michelle Graham. TAIR10: ELMO/CED-12 family protein \| chr3:869479-871687 FORWARD LENGTH=323	SoyBase	E_val: 2.00E-171	ISS
GO:0006909	GO-bp	Annotation by Michelle Graham. GO Biological Process: phagocytosis	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005856	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoskeleton	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR12771	Panther	ENGULFMENT AND CELL MOTILITY	JGI		ISS
PTHR12771:SF3	Panther	ELMO1	JGI		ISS
PF04727	PFAM	ELMO/CED-12 family	JGI		ISS
UniRef100_G7L2P5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ELMO domain-containing protein A n=1 Tax=Medicago truncatula RepID=G7L2P5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JK39	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JK39_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g00740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g00740

Paralog	Evidence	Comments
Glyma19g29990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g00740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g005000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g00740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g00740

Limit To All Plant Sequences

>Glyma03g00740.2   sequence type=transcript   gene model=Glyma03g00740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTTCTGTTTTTTTATTATTTTAAATATTTAGAGTATCCCCTATTAATAAATAAATAAATAAATGGCACACTAAAATAGAGTAGAGGAGAATGGCGAATTTGAGTGATTTGACACAGGACTATAAATTCCTGTCACATGGAAGCAGCAAGAATTGGGAATTGGGAGTTTCATTTTCATTAATTTTTATTTCTCCCCTTTTCTCAATGCTTTTCTTAATGTTGAATCCTTCACAAATCGTCAAGAGTTAGCCCACCCAGAACAACAACGCGTTTCAGCTGGCCACACACATTCTTAATTTTTTTGGCTGGCCTATAGTAAAAACTCATATCAATGTCCTCAAGAACGTTGAGGAGAAGACTCCATCATGGGGATGTTGATGGCAAAAGGCAGGAGCATTTGGAGACTTCGGGATTAGATTCGTTGAGTGAGCCCTTGCTGGCAGATGATGATTATATTGAGAATAAGAAGATATGTACTCTTGAAGATCTATGGGATGATGAGAGGAAGAAGGCCCAGTTTCATTGGACATTCATATTCTCAAACCTCATTGCACAATGGGCACAGTGGTTAGCAAATGTTGTACTAGGATCTGGATCTATTCTTGGGCGTCTTCTATCTTTTCCTTCTGCTGCTTTAAACATGCAAAACAATAGGATGCTTCCTCCATCTCTAAGCCCTCTGCAGGAAGACAGGCTAAGAAACCTACGGCAACGGCTTGAAGTCCCCTTTGATGGTTCTAAAGCAGAGCACCAAGATGCACTTAAATTATTGTGGAAATTGGCTTACCCTGACAGGGAGCTTCCTTCGCTTAAATCAGACCTTTGGAAGGAAATGGGATGGCAAGGTTCAGACCCTTCAACAGATTTTAGGGGTGGAGGATTTATTTCATTAGAGAATCTCATCTTCTTTGCGATGAAGTATCCTGATTCATTCCAGCGATTATTGCATAAACAAGATGGAACCAGAGCTGAGTGGGAATATCCATTTGCAGTAGCTGGAATCAATATTTCTTTTATGTTAGCACAGATGCTGGATCTTCAAGCAGGGCTTCCATCTTCTTCGTCTGGAATTCATTTTCTCAAATTGCTTGAAGAGGATGAAATGGCATTTGATATCCTTTTTTGTGTAGCCTTTCAAATGATGGATGCTCAGTGGCTAGCCAAGCGTGCGACATATATGGAATTTAATGATGTTTTGAAGTCCACAAGAACGCAGTTAGAGCGTGAGCTTGCTCTTGAAGACATTTCCAGCGTGAAAGATTTACCTGCTTACAACATGTTGAGATGATTTGACGATTGCCTTTCAGTTCAACATTTCTCTTTGTTTTGTTTTTTTTCTCTTTTGGCAGAGAATGTTACATGAAATGTATCTATAAAGCATTTGTCATTTTATCTCTATAAAGAAACGTGAAAATCAAGTGATAGTGGGATCGCAAATATCAGATCAATCTTTTCTGCTGATTTCCATCAGCTTTGTATTTAAGCGTGTCTTAGCATTTAGGAAATTCTTCATAAAATTTGTCGTCGCAATAATTACCATAATTCAAGTCTATCATACCAAGTTCCAAGTTTGACAGCTTGAGTGAGTATCCCTATTTTAGAATTGAAGATGATAATTTTATACCTACCAGTAATCAATCTGTAAATTTTGTAAATAATTAGCACCATGGGCTTCGTTTTAAGTGGAGCTTTT

Coding sequences of Glyma03g00740

Limit To All Plant Sequences

>Glyma03g00740.1   sequence type=CDS   gene model=Glyma03g00740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCTCAAGAACGTTGAGGAGAAGACTCCATCATGGGGATGTTGATGGCAAAAGGCAGGAGCATTTGGAGACTTCGGGATTAGATTCGTTGAGTGAGCCCTTGCTGGCAGATGATGATTATATTGAGAATAAGAAGATATGTACTCTTGAAGATCTATGGGATGATGAGAGGAAGAAGGCCCAGTTTCATTGGACATTCATATTCTCAAACCTCATTGCACAATGGGCACAGTGGTTAGCAAATGTTGTACTAGGATCTGGATCTATTCTTGGGCGTCTTCTATCTTTTCCTTCTGCTGCTTTAAACATGCAAAACAATAGGATGCTTCCTCCATCTCTAAGCCCTCTGCAGGAAGACAGGCTAAGAAACCTACGGCAACGGCTTGAAGTCCCCTTTGATGGTTCTAAAGCAGAGCACCAAGATGCACTTAAATTATTGTGGAAATTGGCTTACCCTGACAGGGAGCTTCCTTCGCTTAAATCAGACCTTTGGAAGGAAATGGGATGGCAAGGTTCAGACCCTTCAACAGATTTTAGGGGTGGAGGATTTATTTCATTAGAGAATCTCATCTTCTTTGCGATGAAGTATCCTGATTCATTCCAGCGATTATTGCATAAACAAGATGGAACCAGAGCTGAGTGGGAATATCCATTTGCAGTAGCTGGAATCAATATTTCTTTTATGTTAGCACAGATGCTGGATCTTCAAGCAGGGCTTCCATCTTCTTCGTCTGGAATTCATTTTCTCAAATTGCTTGAAGAGGATGAAATGGCATTTGATATCCTTTTTTGTGTAGCCTTTCAAATGATGGATGCTCAGTGGCTAGCCAAGCGTGCGACATATATGGAATTTAATGATGTTTTGAAGTCCACAAGAACGCAGTTAGAGCGTGAGCTTGCTCTTGAAGACATTTCCAGCGTGAAAGATTTACCTGCTTACAACATGTTGAGATGA

>Glyma03g00740.2   sequence type=CDS   gene model=Glyma03g00740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCTCAAGAACGTTGAGGAGAAGACTCCATCATGGGGATGTTGATGGCAAAAGGCAGGAGCATTTGGAGACTTCGGGATTAGATTCGTTGAGTGAGCCCTTGCTGGCAGATGATGATTATATTGAGAATAAGAAGATATGTACTCTTGAAGATCTATGGGATGATGAGAGGAAGAAGGCCCAGTTTCATTGGACATTCATATTCTCAAACCTCATTGCACAATGGGCACAGTGGTTAGCAAATGTTGTACTAGGATCTGGATCTATTCTTGGGCGTCTTCTATCTTTTCCTTCTGCTGCTTTAAACATGCAAAACAATAGGATGCTTCCTCCATCTCTAAGCCCTCTGCAGGAAGACAGGCTAAGAAACCTACGGCAACGGCTTGAAGTCCCCTTTGATGGTTCTAAAGCAGAGCACCAAGATGCACTTAAATTATTGTGGAAATTGGCTTACCCTGACAGGGAGCTTCCTTCGCTTAAATCAGACCTTTGGAAGGAAATGGGATGGCAAGGTTCAGACCCTTCAACAGATTTTAGGGGTGGAGGATTTATTTCATTAGAGAATCTCATCTTCTTTGCGATGAAGTATCCTGATTCATTCCAGCGATTATTGCATAAACAAGATGGAACCAGAGCTGAGTGGGAATATCCATTTGCAGTAGCTGGAATCAATATTTCTTTTATGTTAGCACAGATGCTGGATCTTCAAGCAGGGCTTCCATCTTCTTCGTCTGGAATTCATTTTCTCAAATTGCTTGAAGAGGATGAAATGGCATTTGATATCCTTTTTTGTGTAGCCTTTCAAATGATGGATGCTCAGTGGCTAGCCAAGCGTGCGACATATATGGAATTTAATGATGTTTTGAAGTCCACAAGAACGCAGTTAGAGCGTGAGCTTGCTCTTGAAGACATTTCCAGCGTGAAAGATTTACCTGCTTACAACATGTTGAGATGA

Predicted protein sequences of Glyma03g00740

Limit To All Plant Sequences

>Glyma03g00740.1   sequence type=predicted peptide   gene model=Glyma03g00740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSRTLRRRLHHGDVDGKRQEHLETSGLDSLSEPLLADDDYIENKKICTLEDLWDDERKKAQFHWTFIFSNLIAQWAQWLANVVLGSGSILGRLLSFPSAALNMQNNRMLPPSLSPLQEDRLRNLRQRLEVPFDGSKAEHQDALKLLWKLAYPDRELPSLKSDLWKEMGWQGSDPSTDFRGGGFISLENLIFFAMKYPDSFQRLLHKQDGTRAEWEYPFAVAGINISFMLAQMLDLQAGLPSSSSGIHFLKLLEEDEMAFDILFCVAFQMMDAQWLAKRATYMEFNDVLKSTRTQLERELALEDISSVKDLPAYNMLR*

>Glyma03g00740.2   sequence type=predicted peptide   gene model=Glyma03g00740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSRTLRRRLHHGDVDGKRQEHLETSGLDSLSEPLLADDDYIENKKICTLEDLWDDERKKAQFHWTFIFSNLIAQWAQWLANVVLGSGSILGRLLSFPSAALNMQNNRMLPPSLSPLQEDRLRNLRQRLEVPFDGSKAEHQDALKLLWKLAYPDRELPSLKSDLWKEMGWQGSDPSTDFRGGGFISLENLIFFAMKYPDSFQRLLHKQDGTRAEWEYPFAVAGINISFMLAQMLDLQAGLPSSSSGIHFLKLLEEDEMAFDILFCVAFQMMDAQWLAKRATYMEFNDVLKSTRTQLERELALEDISSVKDLPAYNMLR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain