Glyma03g00710 - SoyBase

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Report for Sequence Feature Glyma03g00710

Feature Type:	gene_model
Chromosome:	Gm03
Start:	419226
stop:	425060
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g00710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G17910	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1). \| chr5:5927906-5932292 FORWARD LENGTH=1342	SoyBase	E_val: 2.00E-129	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q9AV94	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=Q9AV94_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9FKN5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gb\|AAC35233.1\| n=1 Tax=Arabidopsis thaliana RepID=Q9FKN5_ARATH	SoyBase	E_val: 7.00E-127	ISS

Expression Patterns of Glyma03g00710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g00710

Paralog	Evidence	Comments
Glyma19g30070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g00710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g004800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g00710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g00710

Limit To All Plant Sequences

>Glyma03g00710.2   sequence type=CDS   gene model=Glyma03g00710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCATTGGATCTTATTTGGGTGTACCCTTTTGGTTTTAATTAGGGGGAGAGTTATCAAAGGAGAGAGTGAGAGGAAGATGGGATCAGAAATTGGAATCAAAATAAGGAAAATTGTTGTCATTTCAATCAGAGGTGGTTACAGATCAGTTTGCAACCATCCATTCCTTGTGGGGGTTTTTTGTTTCCTGATTTTGTTGTACAGATCTTTTCCTTTTCTGTTTTCTGTTTTGGTCTCTGCATCTCCTGTTTTGGTCTGCACTGCTATTCTGCTTGGGACCCTTCTCAGTTTTGGGCAGCCAAATGTGCCTGAAGTTGAGATAGAAGAGAAAGTTACTCATGACATTTCATCCTTCCAAGCTGGGTTCTCCGAGGGTGACACTGTTTTTGCTGACAGAGATGAGAGCTATTTTGTGAAGGGGTATTCAGAAAATAGGAGTGATGTGGAAGAGAGGGGCATTGAGGAGGAAGCAAGTTTGGTTAGTGAGAGGGATAATAGGGCCGAAGAAGATCGCGGATTGCTTTCTTCTGACATGCCTCCAGATGATGAAAAGTTGCCGGATATTATTCAGCCCGAGAAGCAAGAAAAAGAGGAAGTGGAGAGGGAAATGAAATTCCATAGTTTTGAGTTGGGAAAGAATAGGGAAATTCATGAAGAGAACCTTAGGTCTGAAGCTTTTTCGAGTGATGATGAAGCTATTGAGAAACAATATGTCATGGTTCAAAAAGTGGATGATGATGTATTTGAATTTGAAAATGAGAAAAGTCCCGGAGATCATTTGGACTTTTCTGCCAGCTCATCTTGGAAACAGGTGGAAAACGACGATGACGAGGATGACTCGGTGGAGTCAGGTTCTGATGGGGCTGAGAGCTCTTCACCAGACGCTTCCATGGCTGACATCATTCCAATGCTTGATGAACTCCATCCACTACTAGACCTAGATGCTCCACAGCCGGCTCATGTGTCCCGTGATGGTTCTGATGCTGCATCTGAGAACTCTGAGAAAAGTGATGATGACAGTGTCGAATCAGACGATGATAGTGAAAACCACGGTGATGCGGACGATGATGGTATTGATGAGCCTGATGATGAAGAGGAAGAAGAAGCGGCAGGTGGCAAAGAGGAGGATGAAAGTAAATCTGCTATTAAGTGGACAGAGGATGACCAAAAGAATCTCATGGATCTGGGAAATTTAGAGCTGGAAAGGAATAAAAGATTGGAGAATCTTATTGCTAGGAGAAGAGCACGGAGATTGATGACTGAGAAGAATCTAATAGACTTAGATTGTGCTGATATTCCCTGTAATGTTGCACCTATTGCTATGACCAGACGTAACCCATTTGATTTTCCTGATGACTCATATGCTGCCATGGGATTACCACCCATTCCTGGATCTGCTCCGTCTATTCTACAGCCTAGACGAAACCCTTTTGATATTCCCTACGACTCAAATGAAGAAAAACCTGATCTTAAGGGGGACAGTTTTCAACAAGAGTTCAAAGTGTTTCATCAAAAAGAGGCCTTTTTTCGGCGGCATGAAAGTTTCAGCGTGGGACCATCAGTATTGGGGTTATCCAAGCAAGAGAGGTATGATTGGAAACCTGTCTTTATATCTGAAAGGATGGCTTCGGAGGGAACAAGCTATCCTTCATTCCAGAGGCAATCAAGTGAAGTTAGTGATTCAAAGTTAAGTTCTGTTCCAGATACTGAATCTGTGAGTTCAATTGATCAGGATGACAGGAAATTCAGTGAGCAAGACTTGTCTCAAGAAACTGAATTTATATCTAACATTGACCATGTTTCTGATGTTGTTGAACATGGAAGCCAATCCTCTGGAGAAAATGATTCTGTGGAGATGATACAAGTTGAGGAGAGCAATGCTTGTCAGGATGAAGGGGAAATAGTTCTGGGCGGGGTGGAAGATCCTTCTGAGATGGTATTCTATCCTGAAACAGGAGAGGTTGAAATCCACGAACAATTCAATGCAGGGGAAACACATTTGAGAAGAGAACCAAGTCATGAGGAGAGTGTCGGCAGCAGCAGATCAAGCCATTCTTCACTATCGGAAGTAATTGACAGCATACCAGATGAAAACATGGAAAAAGCGGAAAATTTGCAGCAAGGAGATGATCATCTCTCTGAATCTAGAATTTCAACACAAGCTTCAGTGGAGGAATCAATCTTCCAGCAAGTTAGTGGTGAGGTGGAAGAAAATCACCATGTAGACCCTTTGTCTGAGAGGGCATTGCCTCCTGCTTCAGTAGAAATGACTGCTAATGCGGCAGAAGAAGAGTCCAAAGTGCATGATCACAGACTGGAAGGTAATACTTCTGATCATGATAAAACTCAAGCAGCCTCTTCCGAACTACATGAGGAAGCCAAAAATGAATTGAGTTCTGAGAAATCTGAAGATGTGAATAATGTTACTGCAAATGAGTTATCTGCAGTTGCCCCAAATTTTGTTGATCAGAATGGATCTACAATGGCTGAGCCGCAGGTTGTCCCTGTTTCTGTGGATTCAAATTTGTCTTCTGATATTGGATCAATAAAGGATGTGACTAATTTAGGCTTAGTTCATGGGCAGGATCTAGCTGACTACATACGTGCTGATTCTGAAGTTCTTCACCAAGACAGTGTAGATTCTCCAGATTCAGATTATCAAATGGCTTCTGAAAAGTCACATCTATCAGATAATGAATCTGTGGAGGAAGGAGCACTGCCCAATTTAGAATCAAGATTTGATAATGCAAATATGTCTACGTCAGTCCAAGATGCAGATGAAATGTTTGATTCTGCGGCTTCTGATGCCCACCATATTTCTTCTAATGGTTCACCTATGGCTGCCCCACGGGATTTAGAGCTCTCACCTGCAGCAGGGCCATCACCAGTGGTTCATCCTGATTCACCTTCTGAAGAAACTGAACATATAGAAAAATTTTCATCAAATAATGATGACATATTTCAGATTCAGCAAGGTAAAACCAACATCCACCAAGATTTGGATAAGAATACGGTTGCTTTCACTTCGGGCAGTCAACATGAAATTGATGTGAAGTCTCCCTCTAACTTGGAGAATGATCTGTCAAGCTCTGATAAATCAGTTGTTGCACAATCTTCTAGTGATCATGATGAAATTCAGAGTTCTAATGCTATCCAGGTTGAATCTGCACACTGTTTTGGCACTTCCAATGATGAAGTTGGAGAATTGCATGATGCAGTTGACAAATTTCCTCCAAGCATTTCTTCTGTGACCTCTGAAAAATTTGAGACCCCTAAATTCAGGTCACCCACTGGTGAAGCAGATTTGGAAGTTGATAGGCACGGGGAAGTTGAAAATGAAGACCAAAATGAAGTGCTAGAAACTGCGCTTCATTCAGAAGAGAGCATGTCTCAGGTTACTGAAGAAAATAGCAATGAAGAATTTGATGATATGAAGGAAATTGATGAAGAATTCTTGTCAGAATTGGACACTGTTGGAGACTTTAGTGTCAATGATGCTGGTGTATCACTTCATACTGGCATTGAACATGAGAAAATTAGAGATGCTCAACTTAGTTCACTCCCTAAGGATGTAAAGACAGAAGAGTTTGAGCAGGACATCCCAGTTCTTGAAGCAAGATCACTTGAAGATATTAACTTGGCTTTTAAGCAACTTCAAGAAGGCGTGGATGTCGAAGAGGTCATCAATCGAAGTACTATTAAGGATCAGAATGTCGGTGGAGAATCTAAAGATCATCTGGAAATTAATTCAGACCTTCAAGTTGTTGAAGCCAGATCTCTAGAAGATATTAACATTGCTTTAAACCAAGTCTCTGAAGGTAATAAAGGGGAGCTGCCAAATTCTTTGGATTCGAAAGACACTTCAGTCAAAGTAGAAGAAAATGAGGATGGCTCAGCCAAGGTGAATGAATTCTTTAACGTAGCAACCAGTTCTGAGGAAATGAGCAGAACTACAGTGGATAAATCAGAAGATGTACCTAATAGCAGCTCCGGTATCGAGGAGAAATCTCACAGTAGGAAATCTAGTTCCAGCTCGAGCTCAATTTTATCCCGCGAGTGTGAGTAA

Predicted protein sequences of Glyma03g00710

Limit To All Plant Sequences

>Glyma03g00710.2   sequence type=predicted peptide   gene model=Glyma03g00710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDHWILFGCTLLVLIRGRVIKGESERKMGSEIGIKIRKIVVISIRGGYRSVCNHPFLVGVFCFLILLYRSFPFLFSVLVSASPVLVCTAILLGTLLSFGQPNVPEVEIEEKVTHDISSFQAGFSEGDTVFADRDESYFVKGYSENRSDVEERGIEEEASLVSERDNRAEEDRGLLSSDMPPDDEKLPDIIQPEKQEKEEVEREMKFHSFELGKNREIHEENLRSEAFSSDDEAIEKQYVMVQKVDDDVFEFENEKSPGDHLDFSASSSWKQVENDDDEDDSVESGSDGAESSSPDASMADIIPMLDELHPLLDLDAPQPAHVSRDGSDAASENSEKSDDDSVESDDDSENHGDADDDGIDEPDDEEEEEAAGGKEEDESKSAIKWTEDDQKNLMDLGNLELERNKRLENLIARRRARRLMTEKNLIDLDCADIPCNVAPIAMTRRNPFDFPDDSYAAMGLPPIPGSAPSILQPRRNPFDIPYDSNEEKPDLKGDSFQQEFKVFHQKEAFFRRHESFSVGPSVLGLSKQERYDWKPVFISERMASEGTSYPSFQRQSSEVSDSKLSSVPDTESVSSIDQDDRKFSEQDLSQETEFISNIDHVSDVVEHGSQSSGENDSVEMIQVEESNACQDEGEIVLGGVEDPSEMVFYPETGEVEIHEQFNAGETHLRREPSHEESVGSSRSSHSSLSEVIDSIPDENMEKAENLQQGDDHLSESRISTQASVEESIFQQVSGEVEENHHVDPLSERALPPASVEMTANAAEEESKVHDHRLEGNTSDHDKTQAASSELHEEAKNELSSEKSEDVNNVTANELSAVAPNFVDQNGSTMAEPQVVPVSVDSNLSSDIGSIKDVTNLGLVHGQDLADYIRADSEVLHQDSVDSPDSDYQMASEKSHLSDNESVEEGALPNLESRFDNANMSTSVQDADEMFDSAASDAHHISSNGSPMAAPRDLELSPAAGPSPVVHPDSPSEETEHIEKFSSNNDDIFQIQQGKTNIHQDLDKNTVAFTSGSQHEIDVKSPSNLENDLSSSDKSVVAQSSSDHDEIQSSNAIQVESAHCFGTSNDEVGELHDAVDKFPPSISSVTSEKFETPKFRSPTGEADLEVDRHGEVENEDQNEVLETALHSEESMSQVTEENSNEEFDDMKEIDEEFLSELDTVGDFSVNDAGVSLHTGIEHEKIRDAQLSSLPKDVKTEEFEQDIPVLEARSLEDINLAFKQLQEGVDVEEVINRSTIKDQNVGGESKDHLEINSDLQVVEARSLEDINIALNQVSEGNKGELPNSLDSKDTSVKVEENEDGSAKVNEFFNVATSSEEMSRTTVDKSEDVPNSSSGIEEKSHSRKSSSSSSSILSRECE*

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