SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G22180 | AT | Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein | chr1:7828434-7829745 REVERSE LENGTH=314 | SoyBase | E_val: 2.00E-103 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1470 | KOG | Phosphatidylinositol transfer protein PDR16 and related proteins | JGI | ISS | |
| PTHR10174 | Panther | RETINALDEHYDE BINDING PROTEIN-RELATED | JGI | ISS | |
| PTHR10174:SF78 | Panther | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLY | JGI | ISS | |
| PF00650 | PFAM | CRAL/TRIO domain | JGI | ISS | |
| PF03765 | PFAM | CRAL/TRIO, N-terminus | JGI | ISS | |
| UniRef100_G7L2Q1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CRAL-TRIO domain-containing protein n=1 Tax=Medicago truncatula RepID=G7L2Q1_MEDTR | SoyBase | E_val: 8.00E-149 | ISS |
| UniRef100_UPI0002339333 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339333 related cluster n=1 Tax=unknown RepID=UPI0002339333 | SoyBase | E_val: 0 | ISS |
|
Glyma03g00690 not represented in the dataset |
Glyma03g00690 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g004600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g00690.3 sequence type=transcript gene model=Glyma03g00690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTATTATAAATATTCTCTCTTTTTTTCTCTCCATTTTTGTTAGGCTTCGTGAAGAGTCCATGACGCCATTGTTTGATTTTTCTACGCCAGCGTAACATTTGTGATGGGTGCATTATTAATATTTACGTGATCAACATTTGGCTACAATAATTGGTTACCCTTGTTTGTTTAATGATCTTGTGGGATGAATATGAAACTTGTTGAGCTGAATCATAGTCGACCAAAGCAATAAAAATGCTAAGGAATTACGTTATTCTATGTAATAATGTCACACAAGAGTGCTGCTGAGGCATATTACTCGTGAAAATTGTGAAACAAGATCATTTTTAGGCATAACAAAAGACAAAAAGAAGATCCAAGAAGCTTAGAGATCTTGTGCCAAAAGATAATATCAAAGCGCTGGATGTTTTAGCTTGATTGGGATTTGAAAAGAAAAGATGTCGTTTAAGAGATCGAAATCAGAAGCTGAAAAAACTTTATCTCCTGAAGAGCAGCAGACCATGATTGGAGAAGTTAGAAAGATAATTGGTCCAATTGCTGACAAGTTCTCTACTCTGTGTTCGGATGCATCAGTTCTAAGATACCTTAGAGCACGAAACTACAATACTAAGAAGGCTGCAAAGATGTTGAAAGGATCCATAAAATGGAGGCTGGAGTTCAAGCCAGAGAAGATCCAATGGGATGATGTTGCTCAAGAAGCTGAGAGAGGAAGGCTATATAAAGCTGATTACATGGACAAGCAAGGAAGGATTGTTTTTGTTATTAGACCTGGTATTCAGATGGTGAAACCATTTCTAGAACCCAAGACTTACAAAAAGGTGATATTTGTTTACCCTGACAACCCAAGGAGCCGCCGCATGGTGATGGAGGAACACCTTGACATGGACAAGCTGGAATCCTATTTTGGTGGGAAAAATACGGTTGGATTCAACTATGAAGCCTATGCTCAGAAAATGAAAGAAGATGACAAAAGCATGTCTGATGTTTTTGATTCATGTTGTTCATCGTCGCCAGGTTTTTTAAGCTCCGAATTTCATGAATCGGTGTAGTCAGGAACCAATGATTCTGAGGATGAAGCATCTAATGATGGAGTAGTTTTTTCCAACTTGGAGAAAGATGATGATAGTAGTCCATATCAGAAGATGCCTTGCTCCCAACATGAATCAAAAAAGACATGAAGAGCTGAATTAGAAGAGAACTAGGCACTTGGCAGGATTAACTATATTATATTACTCATTCAAATTTTACACAAACACTGAACTTAACCAGTTTGTACTATTGGTTTGAATTTTGAAAGTGACATCTGAATCATTACTCTCAACCAATGCCCCACATGGTCCATTCTCCATAGCAGCTGGCATCAATACATGGATGCACCTTTTCCACTGAAAAGGAGAAGAAGTTTGAGTTGGCTCATATGGAATGAGAATTTCAACCAGCACTCAGGAAATAGAAAGTTCAGATTTCTTTCATGTTACTTTTTCCCCTCTCTCTATGCTGGAGTGGGGTTATGATAGGGTGTGTTTCAGTATTCTTTATATCTATTTTTTCAATGTCAAAAGCTATGATGAGAAACACCACCTACCATCCTTTCTTGTACTAAGGTCCAAGTCCTAATTAAATGTGTTCACTGCCTGAAATACTAACACAAAAATGCCTTTTCCTATAAACATCAAAGTTTAGTAGAGACAACGCATTTTCCATTTTGATGTATATGCTAGTTCATGATGAGGTGTCAATGTGCTGGAGAAATTACATCATCAGATCAGCATTATAGACTTGGATAGTGGTTGTGCCTTTACAGAAAGGTAAGAACACGATTCATGTAGGGTAACATCTAACTTAAGAATACATCATACCAATTAGTTAGTACGATGAGATTGTAATATAAATTAGGCTTAAATATATTGTTTTTGGGTAGTTGTAAGTTTGTAATTTTTCAATTTTAGT
>Glyma03g00690.2 sequence type=CDS gene model=Glyma03g00690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTTTAAGAGATCGAAATCAGAAGCTGAAAAAACTTTATCTCCTGAAGAGCAGCAGACCATGATTGGAGAAGTTAGAAAGATAATTGGTCCAATTGCTGACAAGTTCTCTACTCTGTGTTCGGATGCATCAGTTCTAAGATACCTTAGAGCACGAAACTACAATACTAAGAAGGCTGCAAAGATGTTGAAAGGATCCATAAAATGGAGGCTGGAGTTCAAGCCAGAGAAGATCCAATGGGATGATGTTGCTCAAGAAGCTGAGAGAGGAAGGCTATATAAAGCTGATTACATGGACAAGCAAGGAAGGATTGTTTTTGTTATTAGACCTGGTATTCAGAGTGCAAGCAGCTCATGTGCCCAAATCAAGTACCTTATTTACTGTTTGGAGAATGCCATATGGAATATAAGTTCCAATCAAGAAGAGCAGATGGTTTGGCTTATTGATTTTCAAGGGTGGAGCACAGCATGCTTATCGTTGAAGATCGTCCGAGATACTGCTCAAATCCTGCAGGCTCATTACCCTGAGAGGTTGGGCCTTGCAATCTTTTACAATCCACCAAAAGTGTTTGAGTCATTTTGGACGATGGTGAAACCATTTCTAGAACCCAAGACTTACAAAAAGGTGATATTTGTTTACCCTGACAACCCAAGGAGCCGCCGCATGGTGATGGAGGAACACCTTGACATGGACAAGCTGGAATCCTATTTTGGTGGGAAAAATACGGTTGGATTCAACTATGAAGCCTATGCTCAGAAAATGAAAGAAGATGACAAAAGCATGTCTGATGTTTTTGATTCATGTTGTTCATCGTCGCCAGGTTTTTTAAGCTCCGAATTTCATGAATCGGTGTAG >Glyma03g00690.3 sequence type=CDS gene model=Glyma03g00690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTTTAAGAGATCGAAATCAGAAGCTGAAAAAACTTTATCTCCTGAAGAGCAGCAGACCATGATTGGAGAAGTTAGAAAGATAATTGGTCCAATTGCTGACAAGTTCTCTACTCTGTGTTCGGATGCATCAGTTCTAAGATACCTTAGAGCACGAAACTACAATACTAAGAAGGCTGCAAAGATGTTGAAAGGATCCATAAAATGGAGGCTGGAGTTCAAGCCAGAGAAGATCCAATGGGATGATGTTGCTCAAGAAGCTGAGAGAGGAAGGCTATATAAAGCTGATTACATGGACAAGCAAGGAAGGATTGTTTTTGTTATTAGACCTGGTATTCAGATGGTGAAACCATTTCTAGAACCCAAGACTTACAAAAAGGTGATATTTGTTTACCCTGACAACCCAAGGAGCCGCCGCATGGTGATGGAGGAACACCTTGACATGGACAAGCTGGAATCCTATTTTGGTGGGAAAAATACGGTTGGATTCAACTATGAAGCCTATGCTCAGAAAATGAAAGAAGATGACAAAAGCATGTCTGATGTTTTTGATTCATGTTGTTCATCGTCGCCAGGTTTTTTAAGCTCCGAATTTCATGAATCGGTGTAG
>Glyma03g00690.2 sequence type=predicted peptide gene model=Glyma03g00690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSFKRSKSEAEKTLSPEEQQTMIGEVRKIIGPIADKFSTLCSDASVLRYLRARNYNTKKAAKMLKGSIKWRLEFKPEKIQWDDVAQEAERGRLYKADYMDKQGRIVFVIRPGIQSASSSCAQIKYLIYCLENAIWNISSNQEEQMVWLIDFQGWSTACLSLKIVRDTAQILQAHYPERLGLAIFYNPPKVFESFWTMVKPFLEPKTYKKVIFVYPDNPRSRRMVMEEHLDMDKLESYFGGKNTVGFNYEAYAQKMKEDDKSMSDVFDSCCSSSPGFLSSEFHESV* >Glyma03g00690.3 sequence type=predicted peptide gene model=Glyma03g00690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSFKRSKSEAEKTLSPEEQQTMIGEVRKIIGPIADKFSTLCSDASVLRYLRARNYNTKKAAKMLKGSIKWRLEFKPEKIQWDDVAQEAERGRLYKADYMDKQGRIVFVIRPGIQMVKPFLEPKTYKKVIFVYPDNPRSRRMVMEEHLDMDKLESYFGGKNTVGFNYEAYAQKMKEDDKSMSDVFDSCCSSSPGFLSSEFHESV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
