Glyma03g00660 - SoyBase

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Report for Sequence Feature Glyma03g00660

Feature Type:	gene_model
Chromosome:	Gm03
Start:	376609
stop:	378877
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g00660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24380	AT	Annotation by Michelle Graham. TAIR10: INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Oth	SoyBase	E_val: 3.00E-67	ISS
GO:0009257	GO-bp	Annotation by Michelle Graham. GO Biological Process: 10-formyltetrahydrofolate biosynthetic process	SoyBase	N/A	ISS
GO:0009396	GO-bp	Annotation by Michelle Graham. GO Biological Process: folic acid-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
KOG2551	KOG	Phospholipase/carboxyhydrolase	JGI		ISS
PTHR22778	Panther	OVARIAN CANCER GENE-2 PROTEIN-RELATED	JGI		ISS
PF03959	PFAM	Serine hydrolase (FSH1)	JGI		ISS
UniRef100_G7L2Q8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dihydrofolate reductase n=1 Tax=Medicago truncatula RepID=G7L2Q8_MEDTR	SoyBase	E_val: 8.00E-156	ISS
UniRef100_I1JK28	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JK28_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g00660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g00660

Paralog	Evidence	Comments
Glyma19g30110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g00660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g004300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g00660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g00660

Limit To All Plant Sequences

>Glyma03g00660.2   sequence type=transcript   gene model=Glyma03g00660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGAGGCTTACACGTGCAATACCAACCCGCAGAGTCAAATAAGATGGTTGTTGAAATCCAATAAAAAAGGGGGTAGGTAGGAAGAGTCTCTACACTTTCCACTTCCTACAAATATGTCATTTTTCCTTAGCTTGTGAATTGTGAGGCAGAAGAGATTAGAGAAACAACTATGGAAGGAGAAAATGGAAAGAAGCTGAAAATATTGTGCCTCCATGGATTCAGAACAAGTGGGAGTTTTCTTAAAAAGCAAATCAGCAAATGGGATCCTTCTATATTCACTCAATTTGATATGGTTTTCCCAGATGGTAAATACCCTGCAGGAGGGAAGTCTGACATAGAAGGCATCTTCCCTCCACCTTACTTTGAGTGGTTTCAATTCGAAAAGGACTTCACAGTGTACTTTAACTTGGAAGAATGCATCTCATACTTATGCGAATATATTACAGCCAATGGTCCCTTTGATGGCTTCCTTGGCTTCTCACAGGGTGCAACTCTTTCAGCACTTTTGATAGGTTACCAGGCACAGGGAAAGTTACTAAAGGAGCATCCACCAATAAAATTTCTCATATCAATATCAGGATGCAAATTCAGAAATCCCAGCATATGCGATGTTGCCTACAAAGACACCATCAAAGCTAAATCTGTTCATTTCATTGGGGAAAAAGATTGGCTGAAACTTCCTTCTGAGGATCTCACATCTGCATTTGACAAACCCCTGATAATAAGGCATCCCCAAGGTCACACCGTACCACGATTAGGTATGTTAACGCTCTCCTCTCCATGCTTCTTGGTTATGTTTTTCACACTTCAAACTGAACTTTCCTTGTCCTATTGCTAACAGATGAAGTGGCTACCAGTCAATTGAGAAAATGGATTACCGAAGAAGTCCTATGTCAACCAAAAGTTGGCATCTCAGTTTGTGAGCATGAAACAGACCATGAAGAAAAGAAGTCAGAGAAGGGGACCAAGCTAGAACCCTGTGGTACCAATCAAGACAAAGGTGTAAACGGTGTTGAAATAAACAAGGGTTCTGAAACAGTAGAGGTGGCTCAAGCCTGACGATAAGGACTTCTAAGAGGAAGCACCTGAATTTTTAATATTAAATTATGTATCATGTATGATTGGTGATTCATATGGACATGTTTTATGATTTCTCGATCTTTAATAAATTATTATGTATTGTGGATGAGTGGTGATTCATATTGATACTTGCTGTCTAAAATGAGAGGGGAGTCCTTAATGTACTGCACAGATATATTCAGCATTAAAATAAAATTCGACGTATTCCCCTTGAATCAATCGTGAATGTTTCAAACAATTATATTTTATAAAATAGAACATGAATCACAAGTTGGGTATCGCTTTGGTTCCACTATTGGTGCAATACACATCCCTAACTCTCCATAATAGATACATTAATTCACATGACAAAACTGCAAGCTGGGACAACAAAACAGATAACTCTCCCGTCATACACTGCGGTTTAACCAACTCTGTTGCTGATAGTTTGATAAAGAGATTTAAGCTGTGTGTTCCATTTGTCTACGGCAGTGTACTTTTTCATTCCTTTCGACCTGG

>Glyma03g00660.3   sequence type=transcript   gene model=Glyma03g00660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTCATTTCAGATTTGGCTGACTATGTAGTAATTGAAATTTACTGAACATGTACACAAATCTTGCTCAGGACTTCACAGTGTACTTTAACTTGGAAGAATGCATCTCATACTTATGCGAATATATTACAGCCAATGGTCCCTTTGATGGCTTCCTTGGCTTCTCACAGGGTGCAACTCTTTCAGCACTTTTGATAGGTTACCAGGCACAGGGAAAGTTACTAAAGGAGCATCCACCAATAAAATTTCTCATATCAATATCAGGATGCAAATTCAGAAATCCCAGCATATGCGATGTTGCCTACAAAGACACCATCAAAGCTAAATCTGTTCATTTCATTGGGGAAAAAGATTGGCTGAAACTTCCTTCTGAGGATCTCACATCTGCATTTGACAAACCCCTGATAATAAGGCATCCCCAAGGTCACACCGTACCACGATTAGATGAAGTGGCTACCAGTCAATTGAGAAAATGGATTACCGAAGAAGTCCTATGTCAACCAAAAGTTGGCATCTCAGTTTGTGAGCATGAAACAGACCATGAAGAAAAGAAGTCAGAGAAGGGGACCAAGCTAGAACCCTGTGGTACCAATCAAGACAAAGGTGTAAACGGTGTTGAAATAAACAAGGGTTCTGAAACAGTAGAGGTGGCTCAAGCCTGACGATAAGGACTTCTAAGAGGAAGCACCTGAATTTTTAATATTAAATTATGTATCATGTATGATTGGTGATTCATATGGACATGTTTTATGATTTCTCGATCTTTAATAAATTATTATGTATTGTGGATGAGTGGTGATTCATATTGATACTTGCTGTCTAAAATGAGAGGGGAGTCCTTAATGTACTGCACAGATATATTCAGCATTAAAAT

Coding sequences of Glyma03g00660

Limit To All Plant Sequences

>Glyma03g00660.1   sequence type=CDS   gene model=Glyma03g00660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAGAAAATGGAAAGAAGCTGAAAATATTGTGCCTCCATGGATTCAGAACAAGTGGGAGTTTTCTTAAAAAGCAAATCAGCAAATGGGATCCTTCTATATTCACTCAATTTGATATGGTTTTCCCAGATGGTAAATACCCTGCAGGAGGGAAGTCTGACATAGAAGGCATCTTCCCTCCACCTTACTTTGAGTGGTTTCAATTCGAAAAGGACTTCACAGTGTACTTTAACTTGGAAGAATGCATCTCATACTTATGCGAATATATTACAGCCAATGGTCCCTTTGATGGCTTCCTTGGCTTCTCACAGGGTGCAACTCTTTCAGCACTTTTGATAGGTTACCAGGCACAGGGAAAGTTACTAAAGGAGCATCCACCAATAAAATTTCTCATATCAATATCAGGATGCAAATTCAGAAATCCCAGCATATGCGATGTTGCCTACAAAGACACCATCAAAGCTAAATCTGTTCATTTCATTGGGGAAAAAGATTGGCTGAAACTTCCTTCTGAGGATCTCACATCTGCATTTGACAAACCCCTGATAATAAGGCATCCCCAAGGTCACACCGTACCACGATTAGATGAAGTGGCTACCAGTCAATTGAGAAAATGGATTACCGAAGAAGTCCTATGTCAACCAAAAGTTGGCATCTCAGTTTGTGAGCATGAAACAGACCATGAAGAAAAGAAGTCAGAGAAGGGGACCAAGCTAGAACCCTGTGGTACCAATCAAGACAAAGGTGTAAACGGTGTTGAAATAAACAAGGGTTCTGAAACAGTAGAGGTGGCTCAAGCCTGA

>Glyma03g00660.2   sequence type=CDS   gene model=Glyma03g00660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAGAAAATGGAAAGAAGCTGAAAATATTGTGCCTCCATGGATTCAGAACAAGTGGGAGTTTTCTTAAAAAGCAAATCAGCAAATGGGATCCTTCTATATTCACTCAATTTGATATGGTTTTCCCAGATGGTAAATACCCTGCAGGAGGGAAGTCTGACATAGAAGGCATCTTCCCTCCACCTTACTTTGAGTGGTTTCAATTCGAAAAGGACTTCACAGTGTACTTTAACTTGGAAGAATGCATCTCATACTTATGCGAATATATTACAGCCAATGGTCCCTTTGATGGCTTCCTTGGCTTCTCACAGGGTGCAACTCTTTCAGCACTTTTGATAGGTTACCAGGCACAGGGAAAGTTACTAAAGGAGCATCCACCAATAAAATTTCTCATATCAATATCAGGATGCAAATTCAGAAATCCCAGCATATGCGATGTTGCCTACAAAGACACCATCAAAGCTAAATCTGTTCATTTCATTGGGGAAAAAGATTGGCTGAAACTTCCTTCTGAGGATCTCACATCTGCATTTGACAAACCCCTGATAATAAGGCATCCCCAAGGTCACACCGTACCACGATTAGGTATGTTAACGCTCTCCTCTCCATGCTTCTTGGTTATGTTTTTCACACTTCAAACTGAACTTTCCTTGTCCTATTGCTAA

>Glyma03g00660.3   sequence type=CDS   gene model=Glyma03g00660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACACAAATCTTGCTCAGGACTTCACAGTGTACTTTAACTTGGAAGAATGCATCTCATACTTATGCGAATATATTACAGCCAATGGTCCCTTTGATGGCTTCCTTGGCTTCTCACAGGGTGCAACTCTTTCAGCACTTTTGATAGGTTACCAGGCACAGGGAAAGTTACTAAAGGAGCATCCACCAATAAAATTTCTCATATCAATATCAGGATGCAAATTCAGAAATCCCAGCATATGCGATGTTGCCTACAAAGACACCATCAAAGCTAAATCTGTTCATTTCATTGGGGAAAAAGATTGGCTGAAACTTCCTTCTGAGGATCTCACATCTGCATTTGACAAACCCCTGATAATAAGGCATCCCCAAGGTCACACCGTACCACGATTAGATGAAGTGGCTACCAGTCAATTGAGAAAATGGATTACCGAAGAAGTCCTATGTCAACCAAAAGTTGGCATCTCAGTTTGTGAGCATGAAACAGACCATGAAGAAAAGAAGTCAGAGAAGGGGACCAAGCTAGAACCCTGTGGTACCAATCAAGACAAAGGTGTAAACGGTGTTGAAATAAACAAGGGTTCTGAAACAGTAGAGGTGGCTCAAGCCTGA

Predicted protein sequences of Glyma03g00660

Limit To All Plant Sequences

>Glyma03g00660.1   sequence type=predicted peptide   gene model=Glyma03g00660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGENGKKLKILCLHGFRTSGSFLKKQISKWDPSIFTQFDMVFPDGKYPAGGKSDIEGIFPPPYFEWFQFEKDFTVYFNLEECISYLCEYITANGPFDGFLGFSQGATLSALLIGYQAQGKLLKEHPPIKFLISISGCKFRNPSICDVAYKDTIKAKSVHFIGEKDWLKLPSEDLTSAFDKPLIIRHPQGHTVPRLDEVATSQLRKWITEEVLCQPKVGISVCEHETDHEEKKSEKGTKLEPCGTNQDKGVNGVEINKGSETVEVAQA*

>Glyma03g00660.2   sequence type=predicted peptide   gene model=Glyma03g00660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGENGKKLKILCLHGFRTSGSFLKKQISKWDPSIFTQFDMVFPDGKYPAGGKSDIEGIFPPPYFEWFQFEKDFTVYFNLEECISYLCEYITANGPFDGFLGFSQGATLSALLIGYQAQGKLLKEHPPIKFLISISGCKFRNPSICDVAYKDTIKAKSVHFIGEKDWLKLPSEDLTSAFDKPLIIRHPQGHTVPRLGMLTLSSPCFLVMFFTLQTELSLSYC*

>Glyma03g00660.3   sequence type=predicted peptide   gene model=Glyma03g00660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTNLAQDFTVYFNLEECISYLCEYITANGPFDGFLGFSQGATLSALLIGYQAQGKLLKEHPPIKFLISISGCKFRNPSICDVAYKDTIKAKSVHFIGEKDWLKLPSEDLTSAFDKPLIIRHPQGHTVPRLDEVATSQLRKWITEEVLCQPKVGISVCEHETDHEEKKSEKGTKLEPCGTNQDKGVNGVEINKGSETVEVAQA*

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