Glyma03g00650 - SoyBase

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Report for Sequence Feature Glyma03g00650

Feature Type:	gene_model
Chromosome:	Gm03
Start:	371472
stop:	375019
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g00650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G05080	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 22 \| chr5:1498727-1499972 REVERSE LENGTH=251	SoyBase	E_val: 2.00E-135	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0423	KOG	Ubiquitin-protein ligase	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PTHR24067:SF24	Panther		JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
UniRef100_B9SCG2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating enzyme e2S, putative n=1 Tax=Ricinus communis RepID=B9SCG2_RICCO	SoyBase	E_val: 2.00E-147	ISS
UniRef100_C6TJ43	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TJ43_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g00650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g00650

Paralog	Evidence	Comments
Glyma19g30120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g00650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g004200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g00650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g00650

Limit To All Plant Sequences

>Glyma03g00650.2   sequence type=transcript   gene model=Glyma03g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTGAATAAATATTAAATTTCTGTGCCTCAAAGTTCCACCAATCAATCGTTCATTCATTCCAAGGAGGGATCTCTCTCTCTCTCTCTTTCTCTCCTCTCACACCCCCAAAAGCTTCTTCTGTTCCGTGCAGGCAATTTTTCTTTGGTTTGGTTGCATCTTTTGATCTGATCAACAAGTTTGAGAATTCAGTTTGGGAAAGGCCATTCCTCTTTAGTACAAAACAGATTGAGGGTGCCTTTGTGCTGATGGCCACTAATGAAAATCTTCCACCAAATGTAATTAAGCAACTTGCCAAGGAGTTGAAAAGTCTTGATGAATCCCCTCCTGAGGGCATTAAGGTTGTGGTAAATGATGATGATTTTTCGACAATATTTTCTGACATTGAAGGCCCAGGTAAGTAGCTTTTATGTTTTTTGTTGTATGATTGAGCACTCGCATTTGGTAAGGAGCTCAAACTAACTGCAGTACTATAATTTTGCAGCTGGAACTCCTTATGAGAATGGAGTTTTCCGAATGAAGCTGTTGCTGTCTCATGATTTCCCGCATTCTCCACCTAAAGGTTTTTTCTTGACTAAGATTTTCCATCCAAACATTGCAAACAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCCTTGGGTTACGGCATGTTCTTATTGTTGTTAGGTGTCTATTGATTGAACCATTTCCTGAATCAGCTCTAAATGAACAGGCTGGCAAAATGCTGCTTGAAAATTATGAGGAGTATGCTAGACATGCTAGGCTTTACACCGGAATCCATGCAAAACCAAAGCCCAAATTCAAGAGCGGAGCTATATCTGAATCAACAACTGCTCTGAATGTGGATCAGACAAACACCTCTGTGATTAGTGCTGACATCAAAACCACACCGGCGAGTGCTGCATTGCCAGCAGCCACCGCAACAAGAGGAAATAATCAGGAACAGGCAGCAGCGGCTGTTAATGGTTCTAATGCTGCCGCTACAGTCATTTCTGCTGCTGCTTCTGCACCCCAAAAGAAGGAAGGTGGACAAGCAAAAGCTCAGGTGGACAAGAAGAAGATAGATGCCAGAAAGAAAAGTTTGAAAAGATTGTAATAAAATTGTTCAATTATTGATGTTTTTTTTAATTGTGTCTTAGTTTTACAATTTGATAGAGAAAGAGGAAGGAGTGGAGATATGGTCTCCTGGGTTCAACATTTGTTTTATATAATGAATTAGTAATTTCTTGTTAGGAGTAAATGGATGAAATTGAACTTGTTGTCTTTGGACTTGTGTTATACTCTTTGGTAAAATATTGATCTTTTAGGGAAAGAATGCTCTATAAGTAGCGGTAGACTTAAGTTAGGTTATTTTTGGATTCAACTCATTTATGAAAATGGGATTAAAAATTTTCTTTTGAATTCCAAACTGTGCTCTT

>Glyma03g00650.3   sequence type=transcript   gene model=Glyma03g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTGAATAAATATTAAATTTCTGTGCCTCAAAGTTCCACCAATCAATCGTTCATTCATTCCAAGGAGGGATCTCTCTCTCTCTCTCTTTCTCTCCTCTCACACCCCCAAAAGCTTCTTCTGTTCCGTGCAGGCAATTTTTCTTTGGTTTGGTTGCATCTTTTGATCTGATCAACAAGTTTGAGAATTCAGTTTGGGAAAGGCCATTCCTCTTTAGTACAAAACAGATTGAGGGTGCCTTTGTGCTGATGGCCACTAATGAAAATCTTCCACCAAATGTAATTAAGCAACTTGCCAAGGAGTTGAAAAGTCTTGATGAATCCCCTCCTGAGGGCATTAAGGTTGTGGTAAATGATGATGATTTTTCGACAATATTTTCTGACATTGAAGGCCCAGCTGGAACTCCTTATGAGAATGGAGTTTTCCGAATGAAGCTGTTGCTGTCTCATGATTTCCCGCATTCTCCACCTAAAGGTTTTTTCTTGACTAAGATTTTCCATCCAAACATTGCAAACAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCCTTGGGTTACGGCATGTTCTTATTGTTGTTAGGTGTCTATTGATTGAACCATTTCCTGAATCAGCTCTAAATGAACAGGCTGGCAAAATGCTGCTTGAAAATTATGAGGAGTATGCTAGACATGCTAGGCTTTACACCGGAATCCATGCAAAACCAAAGCCCAAATTCAAGAGCGGAGCTATATCTGAATCAACAACTGCTCTGAATGTGGATCAGACAAACACCTCTGTGATTAGTGCTGACATCAAAACCACACCGGCGAGTGCTGCATTGCCAGCAGCCACCGCAACAAGAGGAAATAATCAGGAACAGGCAGCAGCGGCTGTTAATGGTTCTAATGCTGCCGCTACAGTCATTTCTGCTGCTGCTTCTGCACCCCAAAAGAAGGAAGGTGGACAAGCAAAAGCTCAGGTGGACAAGAAGAAGATAGATGCCAGAAAGAAAAGTTTGAAAAGATTGTAATAAAATTGTTCAATTATTGATGTTTTTTTTAATTGTGTCTTAGTTTTACAATTTGATAGAGAAAGAGGAAGGAGTGGAGATATGGTCTCCTGGGTTCAACATTTGTTTTATATAATGAATTAGTAATTTCTTGTTAGGAGTAAATGGATGAAATTGAACTTGTTGTCTTTGGACTTGTGTTATACTCTTTGGTAAAATATTGATCTTTTAGGGAAAGAATGCTCTATAAGTAGCGGTAGACTTAAGTTAGGTTATTTTTGGATTCAACTCATTTATGAAAATGGGATTAAAAATTTTCTTTTGAATTCCAAACTGTGCTCTT

Coding sequences of Glyma03g00650

Limit To All Plant Sequences

>Glyma03g00650.1   sequence type=CDS   gene model=Glyma03g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTAATGAAAATCTTCCACCAAATGTAATTAAGCAACTTGCCAAGGAGTTGAAAAGTCTTGATGAATCCCCTCCTGAGGGCATTAAGGTTGTGGTAAATGATGATGATTTTTCGACAATATTTTCTGACATTGAAGGCCCAGCTGGAACTCCTTATGAGAATGGAGTTTTCCGAATGAAGCTGTTGCTGTCTCATGATTTCCCGCATTCTCCACCTAAAGGTTTTTTCTTGACTAAGATTTTCCATCCAAACATTGCAAACAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCCTTGGGTTACGGCATGTTCTTATTGTTGTTAGGTGTCTATTGATTGAACCATTTCCTGAATCAGCTCTAAATGAACAGGCTGGCAAAATGCTGCTTGAAAATTATGAGGAGTATGCTAGACATGCTAGGCTTTACACCGGAATCCATGCAAAACCAAAGCCCAAATTCAAGAGCGGAGCTATATCTGAATCAACAACTGCTCTGAATGTGGATCAGACAAACACCTCTGTGATTAGTGCTGACATCAAAACCACACCGGCGAGTGCTGCATTGCCAGCAGCCACCGCAACAAGAGGAAATAATCAGGAACAGGCAGCAGCGGCTGTTAATGGTTCTAATGCTGCCGCTACAGTCATTTCTGCTGCTGCTTCTGCACCCCAAAAGAAGGAAGGTGGACAAGCAAAAGCTCAGGTGGACAAGAAGAAGATAGATGCCAGAAAGAAAAGTTTGAAAAGATTGTAA

>Glyma03g00650.2   sequence type=CDS   gene model=Glyma03g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTGTTGCTGTCTCATGATTTCCCGCATTCTCCACCTAAAGGTTTTTTCTTGACTAAGATTTTCCATCCAAACATTGCAAACAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCCTTGGGTTACGGCATGTTCTTATTGTTGTTAGGTGTCTATTGATTGAACCATTTCCTGAATCAGCTCTAAATGAACAGGCTGGCAAAATGCTGCTTGAAAATTATGAGGAGTATGCTAGACATGCTAGGCTTTACACCGGAATCCATGCAAAACCAAAGCCCAAATTCAAGAGCGGAGCTATATCTGAATCAACAACTGCTCTGAATGTGGATCAGACAAACACCTCTGTGATTAGTGCTGACATCAAAACCACACCGGCGAGTGCTGCATTGCCAGCAGCCACCGCAACAAGAGGAAATAATCAGGAACAGGCAGCAGCGGCTGTTAATGGTTCTAATGCTGCCGCTACAGTCATTTCTGCTGCTGCTTCTGCACCCCAAAAGAAGGAAGGTGGACAAGCAAAAGCTCAGGTGGACAAGAAGAAGATAGATGCCAGAAAGAAAAGTTTGAAAAGATTGTAA

>Glyma03g00650.3   sequence type=CDS   gene model=Glyma03g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTAATGAAAATCTTCCACCAAATGTAATTAAGCAACTTGCCAAGGAGTTGAAAAGTCTTGATGAATCCCCTCCTGAGGGCATTAAGGTTGTGGTAAATGATGATGATTTTTCGACAATATTTTCTGACATTGAAGGCCCAGCTGGAACTCCTTATGAGAATGGAGTTTTCCGAATGAAGCTGTTGCTGTCTCATGATTTCCCGCATTCTCCACCTAAAGGTTTTTTCTTGACTAAGATTTTCCATCCAAACATTGCAAACAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCCTTGGGTTACGGCATGTTCTTATTGTTGTTAGGTGTCTATTGATTGAACCATTTCCTGAATCAGCTCTAAATGAACAGGCTGGCAAAATGCTGCTTGAAAATTATGAGGAGTATGCTAGACATGCTAGGCTTTACACCGGAATCCATGCAAAACCAAAGCCCAAATTCAAGAGCGGAGCTATATCTGAATCAACAACTGCTCTGAATGTGGATCAGACAAACACCTCTGTGATTAGTGCTGACATCAAAACCACACCGGCGAGTGCTGCATTGCCAGCAGCCACCGCAACAAGAGGAAATAATCAGGAACAGGCAGCAGCGGCTGTTAATGGTTCTAATGCTGCCGCTACAGTCATTTCTGCTGCTGCTTCTGCACCCCAAAAGAAGGAAGGTGGACAAGCAAAAGCTCAGGTGGACAAGAAGAAGATAGATGCCAGAAAGAAAAGTTTGAAAAGATTGTAA

Predicted protein sequences of Glyma03g00650

Limit To All Plant Sequences

>Glyma03g00650.1   sequence type=predicted peptide   gene model=Glyma03g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATNENLPPNVIKQLAKELKSLDESPPEGIKVVVNDDDFSTIFSDIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGFFLTKIFHPNIANNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARLYTGIHAKPKPKFKSGAISESTTALNVDQTNTSVISADIKTTPASAALPAATATRGNNQEQAAAAVNGSNAAATVISAAASAPQKKEGGQAKAQVDKKKIDARKKSLKRL*

>Glyma03g00650.2   sequence type=predicted peptide   gene model=Glyma03g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLLLSHDFPHSPPKGFFLTKIFHPNIANNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARLYTGIHAKPKPKFKSGAISESTTALNVDQTNTSVISADIKTTPASAALPAATATRGNNQEQAAAAVNGSNAAATVISAAASAPQKKEGGQAKAQVDKKKIDARKKSLKRL*

>Glyma03g00650.3   sequence type=predicted peptide   gene model=Glyma03g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATNENLPPNVIKQLAKELKSLDESPPEGIKVVVNDDDFSTIFSDIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGFFLTKIFHPNIANNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARLYTGIHAKPKPKFKSGAISESTTALNVDQTNTSVISADIKTTPASAALPAATATRGNNQEQAAAAVNGSNAAATVISAAASAPQKKEGGQAKAQVDKKKIDARKKSLKRL*

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