Report for Sequence Feature Glyma03g00620
Feature Type: gene_model
Chromosome: Gm03
Start: 344339
stop: 348524
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g00620
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G56810 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:21036927-21038927 REVERSE LENGTH=332
SoyBase E_val: 1.00E-17 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1JK22 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JK22_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma03g00620
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma03g00620
Paralog Evidence Comments
Glyma19g30160 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g00620 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g003800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g00620
Coding sequences of Glyma03g00620
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g00620.1 sequence type=CDS gene model=Glyma03g00620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGCGACAGAGCAGCGCCGTGTCGCCGTCGTCGTCGCGGCGAGAAACTCCGCCGGAGAAGATTCACGCGAAGACCATCGGTTGCATGTCCGGCATTCTCCACTTCATCTCCAACTCCAATTCCCGTCGCTCTCGCCGCTTCCTCACATTCGGAAAGAGCCGGATTAATAAGAACCCCGCCGACGCCGGAAATTCGAAGCCAGCCGCCGATGAACGGAGGCTGTCGTCCGACGTGCCGAGGAGTCCGACTTTGCCGGCGGAGATTCGGCTATCGAGTGTTAAGGCGCCTCCGGTGGAGAGACGCCGCGAGGCGCCGGCGCTAGTGGCGAGGCTGATGGGGCTGGAGGCGGCGCCGGCGGAGCCGCCGGATACGGTGGCGGAGAAGAGGCAGAAGCTGCTTGGGGCGTTGCAGAGGTGCGATGAGGATCTGAAGGCGCTGAAGAAGATCATCGAGGCCGTGCGTTTGACCGATCCTCTTCCGCCGTCGACGTCGCCGGCGGTGGCTTGTGTTGGCTTCGAGGATGAATTTGGAACGGTTGCGGAGGTGAAGTGTTCGGTGGTTAACGGGGAGCCACAGCAACCGAGTCCGGTGTCTGTGCTTGACGAGTTCACTCGTTCGCCACTCAGTCCGAGTTGCCACTCGGGACGGCATTCATTTCCTCGAATACAACTACAGAAACAACAGTTATTAAAGAAGCCAGGAGAGGAAGAAATCAGCAGCACATACATCTACGAGAGAATGACATGCGAGTCAGTGAATAGGAAAGTCAACGACGAAGATCATTTGGCTATGTGGAGTAGCAAAGCCATGATAAAAAGTGTGGATGAAGTGTGTAAGGACGTTACATGGGGAGAAAAACGAGAGCTTGGAAGAATTGGATTGGCTTTGCAGGATTATATTTGCAGAGATTTGATTGAAGAAATTGTTAGAGAATTAGGATGCTTCTACACTCTGCCTTTTGAGGCATGTAAGAGAAGACTCTGCTTCTAA
Predicted protein sequences of Glyma03g00620
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g00620.1 sequence type=predicted peptide gene model=Glyma03g00620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKRQSSAVSPSSSRRETPPEKIHAKTIGCMSGILHFISNSNSRRSRRFLTFGKSRINKNPADAGNSKPAADERRLSSDVPRSPTLPAEIRLSSVKAPPVERRREAPALVARLMGLEAAPAEPPDTVAEKRQKLLGALQRCDEDLKALKKIIEAVRLTDPLPPSTSPAVACVGFEDEFGTVAEVKCSVVNGEPQQPSPVSVLDEFTRSPLSPSCHSGRHSFPRIQLQKQQLLKKPGEEEISSTYIYERMTCESVNRKVNDEDHLAMWSSKAMIKSVDEVCKDVTWGEKRELGRIGLALQDYICRDLIEEIVRELGCFYTLPFEACKRRLCF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
