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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26260 | AT | Annotation by Michelle Graham. TAIR10: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 | chr2:11178237-11182872 FORWARD LENGTH=564 | SoyBase | E_val: 0 | ISS |
| GO:0006694 | GO-bp | Annotation by Michelle Graham. GO Biological Process: steroid biosynthetic process | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0019745 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003854 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0047012 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity | SoyBase | N/A | ISS |
| KOG1430 | KOG | C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases | JGI | ISS | |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | ISS | |
| PTHR10366:SF20 | Panther | NODULATION PROTEIN NOLK-RELATED | JGI | ISS | |
| PF01073 | PFAM | 3-beta hydroxysteroid dehydrogenase/isomerase family | JGI | ISS | |
| PF02453 | PFAM | Reticulon | JGI | ISS | |
| UniRef100_G7J951 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform n=1 Tax=Medicago truncatula RepID=G7J951_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JK06 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JK06_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g00480 not represented in the dataset |
Glyma03g00480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g14860 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g002500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g00480.2 sequence type=transcript gene model=Glyma03g00480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTATAATTAAGATTAAAATAATGATGCCTTTAATTGAGTAGTAAAATTAATTGATTAATTTTGTTCCAACGTCACAATTTATTTTGAAAAAGAAAAAACAAAACTCTTCCTTGTTGGTGCCTCATTTTATCATCCTTTCGAGAAGCTTCTCCACTGGCCTTCTCACTTGTCCATTTTCTCTCTTCGCTTCTCTTCGCTCCTCCGTCACTCCACCGCCGCGTCGCTCCGCCGTTGGTCGCGTGTTTGCGGCGAGATCTACATCCTTAGTGTGAATCTGCGATTCTTCGAATCGAATCAGGTGAGAGCGTGGTGTGTGTTTGAGTTTTGAGTATGGCAGCGGCGGAAGATAAGTGGTGCGTGGTGACCGGAGGTCGTGGTTTCGCAGCTCGGCATTTAGTGGAAATGCTAATCCGTCACAACGAGTACTGCGTTCGCATCGCCGATTTGGAGGCCAACATTGTTCTCGAGCCCGCCGAGCAGTTAGGGCTTCTCGGCCAGGCCCTGCACTCGGGCCGGGCCCAATATGTCTCCCTTGATCTTCGCAACAAGGCCCAACTTCTAAAAGTGCAGCGTTGGAGGGAGTTGAGGTTGTGTTCCACATGGCTGCTCCGAACTCTTCCATTAACAACTACCAGCTTCATCATTCCGTCAATGTGCAAGGGACCAAGAATGTCATCGATGCTTGCGTGGAGCTGAACGTGAAGCGTCTCGTTTACACCAGCTCTCCCAGCGTCGTCTTCGACGGCGTTCATGGAATTCATAATGGAAACGAAACAATGCCTTATGCGCATTCGCCTAATGATCATTATTCAGCGACAAAAGCTGAGGGTGAGGCATTGGTTATTAAAGCTAATGGGACTAATGGGCTCCTAACGTGCTGCATACGCCCTAGCAGCATTTTTGGGCCTGGTGACAGGTTGTTGGTGCCTTCACTAGTTGATGCTGCCAGAAAAGGAAAATCTAAGTTCCTTATTGGTGATGGCAATAACGTTTATGATTTCACATATGTTGAAAATGTGGCTCATGCCCATATATGTGCTGATCGAGCTCTAGTTTCAGAAGCACCAGTTTCAGAAAAAGCGGCAGGAGAGGCATATTTCATAACAAATATGGAACCTATGAAATTTTGGGAGTTCGTGTCAGTGGTAGTGGAAGGTCTTGGATATGAAGGGCCAAGAATAAAGATCCCTACCTTTGTTATCATGCCATTTGCACATTTGGTGGAGTGGATATATAGGCTACTAGGCCCATATGGGATGAAGGTGCCCCAGTTAACTCCTTCAAGAATAAGACTCACGTCTTGCAGCAGGACTTTTGATTGCTCAAAAGCAAAGGATCGCCTTGGCTATGCACCCATCGTAACTCTACAGGAGGGTCTGCGTAGGACAATTGAATCATACACACACTTGAAGGCTGAAAATCAACCTAAAACTAAAAGAGAAGGTTCCTCAAAAGCTTCCATATATCTTGGAAGTGGAAGAGTTGCCGACACATTGCTTTGGAAGGATAAAAAGCAAACTTTCATCGCATTGTTAGTCTTGATTGCAATATACTTCAACTTCATTGCATCGGAAAATACCATCATTAGTGCTCTGACAAAGCTTCTGTTGTTTGCATCGATCTTTTTATTCATTCATGGCATTCTACCTGCAAAAATATTGGGGTATACTCTTGAGAAAATACCCAAATCATGGTTTCACTTATCAGAAGATATGTCTCATCAAATTGCTCTCTCAGTAGCCTCATCATGGAATATTGCTGTGAATGTTTTGAAATCCCTTGCAGATGGGAATGATTGGGTGCTGTTCTTCAAGGCTGTTCTCTCTCTGTTCATTCTCAGCTTCCTTGGAGCCTTTTCACTGCAGAGCTTGTATACTATAGGGGTTACCTTTGCGTTTATAGCTTTCTACGTATACGAACAGAAGGAGGAAGAGATTGGTGGCTTATTCATCAAAACACATTCTCTTGGATGCAAATTGAAATCTGATCTCACCAGGAAGTTTCTTTCTTCAAAGAAGATTGATTGATAGCTTTTGTAGCGCTAGCTTTTTTCTTAGTTGCACCTTACATATCCGTTGGAGTTCTGTGTATGATTGTACAATAATTGTAATTTAATTGATTGATATTTAGTCAACTTGCAAAAGTTTTGTTTCTGTTTTTTCGAAAATTCTTGCTTTGACGAGTTGTACTCATTACATTGAATTAATTTTGTTGGTTGGGCTATGTAGCTAAGTATAAATTAGAAGTAGTAAGGATGACTATGCCGAGGGGTGTAGTACCTCCGCTCTTGATTCCCATTTCTATAATCGAG
>Glyma03g00480.1 sequence type=CDS gene model=Glyma03g00480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCGGCGGAAGATAAGTGGTGCGTGGTGACCGGAGGTCGTGGTTTCGCAGCTCGGCATTTAGTGGAAATGCTAATCCGTCACAACGAGTACTGCGTTCGCATCGCCGATTTGGAGGCCAACATTGTTCTCGAGCCCGCCGAGCAGTTAGGGCTTCTCGGCCAGGCCCTGCACTCGGGCCGGGCCCAATATGTCTCCCTTGATCTTCGCAACAAGGCCCAACTTCTAAAAGCGTTGGAGGGAGTTGAGGTTGTGTTCCACATGGCTGCTCCGAACTCTTCCATTAACAACTACCAGCTTCATCATTCCGTCAATGTGCAAGGGACCAAGAATGTCATCGATGCTTGCGTGGAGCTGAACGTGAAGCGTCTCGTTTACACCAGCTCTCCCAGCGTCGTCTTCGACGGCGTTCATGGAATTCATAATGGAAACGAAACAATGCCTTATGCGCATTCGCCTAATGATCATTATTCAGCGACAAAAGCTGAGGGTGAGGCATTGGTTATTAAAGCTAATGGGACTAATGGGCTCCTAACGTGCTGCATACGCCCTAGCAGCATTTTTGGGCCTGGTGACAGGTTGTTGGTGCCTTCACTAGTTGATGCTGCCAGAAAAGGAAAATCTAAGTTCCTTATTGGTGATGGCAATAACGTTTATGATTTCACATATGTTGAAAATGTGGCTCATGCCCATATATGTGCTGATCGAGCTCTAGTTTCAGAAGCACCAGTTTCAGAAAAAGCGGCAGGAGAGGCATATTTCATAACAAATATGGAACCTATGAAATTTTGGGAGTTCGTGTCAGTGGTAGTGGAAGGTCTTGGATATGAAGGGCCAAGAATAAAGATCCCTACCTTTGTTATCATGCCATTTGCACATTTGGTGGAGTGGATATATAGGCTACTAGGCCCATATGGGATGAAGGTGCCCCAGTTAACTCCTTCAAGAATAAGACTCACGTCTTGCAGCAGGACTTTTGATTGCTCAAAAGCAAAGGATCGCCTTGGCTATGCACCCATCGTAACTCTACAGGAGGGTCTGCGTAGGACAATTGAATCATACACACACTTGAAGGCTGAAAATCAACCTAAAACTAAAAGAGAAGGTTCCTCAAAAGCTTCCATATATCTTGGAAGTGGAAGAGTTGCCGACACATTGCTTTGGAAGGATAAAAAGCAAACTTTCATCGCATTGTTAGTCTTGATTGCAATATACTTCAACTTCATTGCATCGGAAAATACCATCATTAGTGCTCTGACAAAGCTTCTGTTGTTTGCATCGATCTTTTTATTCATTCATGGCATTCTACCTGCAAAAATATTGGGGTATACTCTTGAGAAAATACCCAAATCATGGTTTCACTTATCAGAAGATATGTCTCATCAAATTGCTCTCTCAGTAGCCTCATCATGGAATATTGCTGTGAATGTTTTGAAATCCCTTGCAGATGGGAATGATTGGGTGCTGTTCTTCAAGGCTGTTCTCTCTCTGTTCATTCTCAGCTTCCTTGGAGCCTTTTCACTGCAGAGCTTGTATACTATAGGGGTTACCTTTGCGTTTATAGCTTTCTACGTATACGAACAGAAGGAGGAAGAGATTGGTGGCTTATTCATCAAAACACATTCTCTTGGATGCAAATTGAAATCTGATCTCACCAGGAAGTTTCTTTCTTCAAAGAAGATTGATTGA >Glyma03g00480.2 sequence type=CDS gene model=Glyma03g00480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCTCCGAACTCTTCCATTAACAACTACCAGCTTCATCATTCCGTCAATGTGCAAGGGACCAAGAATGTCATCGATGCTTGCGTGGAGCTGAACGTGAAGCGTCTCGTTTACACCAGCTCTCCCAGCGTCGTCTTCGACGGCGTTCATGGAATTCATAATGGAAACGAAACAATGCCTTATGCGCATTCGCCTAATGATCATTATTCAGCGACAAAAGCTGAGGGTGAGGCATTGGTTATTAAAGCTAATGGGACTAATGGGCTCCTAACGTGCTGCATACGCCCTAGCAGCATTTTTGGGCCTGGTGACAGGTTGTTGGTGCCTTCACTAGTTGATGCTGCCAGAAAAGGAAAATCTAAGTTCCTTATTGGTGATGGCAATAACGTTTATGATTTCACATATGTTGAAAATGTGGCTCATGCCCATATATGTGCTGATCGAGCTCTAGTTTCAGAAGCACCAGTTTCAGAAAAAGCGGCAGGAGAGGCATATTTCATAACAAATATGGAACCTATGAAATTTTGGGAGTTCGTGTCAGTGGTAGTGGAAGGTCTTGGATATGAAGGGCCAAGAATAAAGATCCCTACCTTTGTTATCATGCCATTTGCACATTTGGTGGAGTGGATATATAGGCTACTAGGCCCATATGGGATGAAGGTGCCCCAGTTAACTCCTTCAAGAATAAGACTCACGTCTTGCAGCAGGACTTTTGATTGCTCAAAAGCAAAGGATCGCCTTGGCTATGCACCCATCGTAACTCTACAGGAGGGTCTGCGTAGGACAATTGAATCATACACACACTTGAAGGCTGAAAATCAACCTAAAACTAAAAGAGAAGGTTCCTCAAAAGCTTCCATATATCTTGGAAGTGGAAGAGTTGCCGACACATTGCTTTGGAAGGATAAAAAGCAAACTTTCATCGCATTGTTAGTCTTGATTGCAATATACTTCAACTTCATTGCATCGGAAAATACCATCATTAGTGCTCTGACAAAGCTTCTGTTGTTTGCATCGATCTTTTTATTCATTCATGGCATTCTACCTGCAAAAATATTGGGGTATACTCTTGAGAAAATACCCAAATCATGGTTTCACTTATCAGAAGATATGTCTCATCAAATTGCTCTCTCAGTAGCCTCATCATGGAATATTGCTGTGAATGTTTTGAAATCCCTTGCAGATGGGAATGATTGGGTGCTGTTCTTCAAGGCTGTTCTCTCTCTGTTCATTCTCAGCTTCCTTGGAGCCTTTTCACTGCAGAGCTTGTATACTATAGGGGTTACCTTTGCGTTTATAGCTTTCTACGTATACGAACAGAAGGAGGAAGAGATTGGTGGCTTATTCATCAAAACACATTCTCTTGGATGCAAATTGAAATCTGATCTCACCAGGAAGTTTCTTTCTTCAAAGAAGATTGATTGA
>Glyma03g00480.1 sequence type=predicted peptide gene model=Glyma03g00480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAAEDKWCVVTGGRGFAARHLVEMLIRHNEYCVRIADLEANIVLEPAEQLGLLGQALHSGRAQYVSLDLRNKAQLLKALEGVEVVFHMAAPNSSINNYQLHHSVNVQGTKNVIDACVELNVKRLVYTSSPSVVFDGVHGIHNGNETMPYAHSPNDHYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVDAARKGKSKFLIGDGNNVYDFTYVENVAHAHICADRALVSEAPVSEKAAGEAYFITNMEPMKFWEFVSVVVEGLGYEGPRIKIPTFVIMPFAHLVEWIYRLLGPYGMKVPQLTPSRIRLTSCSRTFDCSKAKDRLGYAPIVTLQEGLRRTIESYTHLKAENQPKTKREGSSKASIYLGSGRVADTLLWKDKKQTFIALLVLIAIYFNFIASENTIISALTKLLLFASIFLFIHGILPAKILGYTLEKIPKSWFHLSEDMSHQIALSVASSWNIAVNVLKSLADGNDWVLFFKAVLSLFILSFLGAFSLQSLYTIGVTFAFIAFYVYEQKEEEIGGLFIKTHSLGCKLKSDLTRKFLSSKKID* >Glyma03g00480.2 sequence type=predicted peptide gene model=Glyma03g00480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAPNSSINNYQLHHSVNVQGTKNVIDACVELNVKRLVYTSSPSVVFDGVHGIHNGNETMPYAHSPNDHYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVDAARKGKSKFLIGDGNNVYDFTYVENVAHAHICADRALVSEAPVSEKAAGEAYFITNMEPMKFWEFVSVVVEGLGYEGPRIKIPTFVIMPFAHLVEWIYRLLGPYGMKVPQLTPSRIRLTSCSRTFDCSKAKDRLGYAPIVTLQEGLRRTIESYTHLKAENQPKTKREGSSKASIYLGSGRVADTLLWKDKKQTFIALLVLIAIYFNFIASENTIISALTKLLLFASIFLFIHGILPAKILGYTLEKIPKSWFHLSEDMSHQIALSVASSWNIAVNVLKSLADGNDWVLFFKAVLSLFILSFLGAFSLQSLYTIGVTFAFIAFYVYEQKEEEIGGLFIKTHSLGCKLKSDLTRKFLSSKKID*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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