SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G01930 | AT | Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase superfamily protein | chr5:361189-362867 REVERSE LENGTH=448 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0043169 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation binding | SoyBase | N/A | ISS |
| PF00150 | PFAM | Cellulase (glycosyl hydrolase family 5) | JGI | ISS | |
| UniRef100_G7LAQ6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mannan endo-1,4-beta-mannosidase n=1 Tax=Medicago truncatula RepID=G7LAQ6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JK01 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JK01_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g00440 not represented in the dataset |
Glyma03g00440 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g34630 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g002100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g00440.2 sequence type=transcript gene model=Glyma03g00440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTCCCCAACTAGGTATCAAACTCCTCCACCAAGGTTTTAGAAAAGAAGAGAACTACATGGACACAACACACACAAACAGTGAATATGAAGATTGGAAGAGCATTGATATAGCAGATTCTATCTTAAGTTATGGTGAATTGGGAGACATGGAAGAAAATGAATGGCAGATGGTGCAAACGAAAGGAAACCAATTTGTGGTGAACGACCAACCTTTCTATGTTAATGGATTCAACACATACTGGTTGATGGTATTTGCTGCGGATGAGTCCACAAGAGGGAAGGTCACTGAGGTGTTCAAACATGCATCCTCTGTGGGTATGTCAGTTTGTAGGACTTGGGCCTTCAATGATGGCCAATGGCGTGCTCTTCAGAAATCTCCATCAGTTTATGATGAAGACGTATTCAAGGCCTTGGACTTTGTGGTAAGTGAAGCAAGGAAATACAAAATCAGGCTCATATTATCACTGGTTAACAACTGGGAGGCTTATGGTGGCAAACCACAGTATGTGAAGTGGGGCAATGCAGCTGGCCTTAACTTGACCTCTGATGATGACTTCTTTTCACATCCAACTCTCAGAAGCTACTACAAGGCTCATGTTAAGACGGTGCTCAATAGAGTTAATACATTCACAAATATCACTTACAAGGAAGATCCAACAATTTTTGCTTGGGAACTGATGAATGAGCCTCGATGCACCTCAGACTCCTCAGGTGATGTGTTACAGGATTGGATAAAAGAAATGGCATTCTATGTGAAGAGCATTGATCCAAAACACCTAGTGGAGATTGGACTAGAAGGATTTTATGGCCCCTCAACACCTCAGAAATATCAGTTCAACCCAAATTCATATGCTCATGAGGTTGGAACTGATTTTATCAGGAACCACCAGGTTCTAGGTGTTGACTTCGCTTCTGTTCACATATATCCAGACTCTTGGATTTCACAATCAGTTGCAGATTCCCATCTCCCATTCATAAAGACTTGGATGGAAGCCCACATAGAGGATGCTGAAAAGTATCTTGGAATGCCCGTTGTTTTTGCTGAGTTTGGTGTATCTGCAAAAGCTCCTGGCTACAATTCAACATATAGAGACAACCTTATAAACACTGTGTACAAGACCATCCTGAACTCTACAAAGAAAGGAGGTAGTGGGGCTGGAAGCCTTGTGTGGCAGCTCTTTCCTGACGGAACGGATTACATGGATGATGGCTATGCAATTGTTCTCTCAAAGTCACCTTCCACGTCAAGCATTATATCCCTTCAATCCACAAGGCTAGCCCTCTTCAATTCCCTGTGTTCTAAGAAATGCCGTTGGGGTTGTAAGAAAAGAAATGTGTTGGAAAAAGTACTCTATCATGACGAACTGTAACACCGTATGTGGAAAGTTGCCAACTAGTGCTATGTAAAAAAGCATGTCCGTGGTGGATGCAAGAGTATTAGCTTCATTTTGAAAACGATAATACATAGTAAAACGAAGACGAGATAAATATGGGGCTCACCGTACCATTCTGTTTGTATTGATGCCAATAGTTTACTTTATATGTTCCGACATATGTGTGGCATTTTGTAAAATAAGCTAGTAATTTTGTTGTGAAGAACTATTGTGTTATTATATCGATGACAACTCTTTGAAGGCCACAAGAAGCACAATTTCGTACAAGAATACTAATCAAATGACAGAGCTATATGAAACTGAATATATAATCTCATCTTGGATGTAAGTATGTAAGTTTTATCTAGTAAGTGTCGATAGAATGCAGCTCTACTTAGCTGTATGTCCTGTTTCAAGGCATAGAACTCGAAGTTTAGGTATTACAAGTGCGGTCCCGCCAATCTTCAAGCATTCACCTTTTGTATAAAGAAACCATAGGAGGCAACTGATTAATCTCTTACAACCATTAGGTGCTCCTGCTTGAGATTGTTGTCATATAGATTACACGAAAATTATAAATGTATACTGCAGCAATAATGTTTCTTTCTGTAAGCTTTGATGTCCCCAGGCTTATGGTGTGCCTGTAATGAAGTA >Glyma03g00440.3 sequence type=transcript gene model=Glyma03g00440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAAGACATCGTGGCTAGGGGTAACCAACTCTATGGAAACACACAAGAGATTTGGATTACGTACTATTATTACCTTGGTCCTTTTTCTGACTCTTACTAAAAGTCTAAGCTCAACTGCATTTGATGTTAGTGAATATGAAGATTGGAAGAGCATTGATATAGCAGATTCTATCTTAAGTTATGGAAGTGAATTGGGAGACATGGAAGAAAATGAATGGCAGATGGTGCAAACGAAAGGAAACCAATTTGTGGTGAACGACCAACCTTTCTATGTTAATGGATTCAACACATACTGGTTGATGGTATTTGCTGCGGATGAGTCCACAAGAGGGAAGGTCACTGAGGTGTTCAAACATGCATCCTCTGTGGGTATGTCAGTTTGTAGGACTTGGGCCTTCAATGATGGCCAATGGCGTGCTCTTCAGAAATCTCCATCAGTTTATGATGAAGACGTATTCAAGGCCTTGGACTTTGTGGTAAGTGAAGCAAGGAAATACAAAATCAGGCTCATATTATCACTGGTTAACAACTGGGAGGCTTATGGTGGCAAACCACAGTATGTGAAGTGGGGCAATGCAGCTGGCCTTAACTTGACCTCTGATGATGACTTCTTTTCACATCCAACTCTCAGAAGCTACTACAAGGCTCATGTTAAGACGGTGCTCAATAGAGTTAATACATTCACAAATATCACTTACAAGGAAGATCCAACAATTTTTGCTTGGGAACTGATGAATGAGCCTCGATGCACCTCAGACTCCTCAGGTGATGTGTTACAGGATTGGATAAAAGAAATGGCATTCTATGTGAAGAGCATTGATCCAAAACACCTAGTGGAGATTGGACTAGAAGGATTTTATGGCCCCTCAACACCTCAGAAATATCAGTTCAACCCAAATTCATATGCTCATGAGGTTGGAACTGATTTTATCAGGAACCACCAGGTTCTAGGTGTTGACTTCGCTTCTGTTCACATATATCCAGACTCTTGGATTTCACAATCAGTTGCAGATTCCCATCTCCCATTCATAAAGACTTGGATGGAAGCCCACATAGAGGATGCTGAAAAGTATCTTGGAATGCCCGTTGTTTTTGCTGAGTTTGGTGTATCTGCAAAAGCTCCTGGCTACAATTCAACATATAGAGACAACCTTATAAACACTGTGTACAAGACCATCCTGAACTCTACAAAGAAAGGAGGTAGTGGGGCTGGAAGCCTTGTGTGGCAGCTCTTTCCTGACGGAACGGATTACATGGATGATGGCTATGCAATTGTTCTCTCAAAGTCACCTTCCACGTCAAGCATTATATCCCTTCAATCCACAAGGCTAGCCCTCTTCAATTCCCTGTGTTCTAAGAAATGCCGTTGGGGTTGTAAGAAAAGAAATGTGTTGGAAAAAGTACTCTATCATGACGAACTGTAACACCGTATGTGGAAAGTTGCCAACTAGTGCTATGTAAAAAAGCATGTCCGTGGTGGATGCAAGAGTATTAGCTTCATTTTGAAAACGATAATACATAGTAAAACGAAGACGAGATAAATATGGGGCTCACCGTACCATTCTGTTTGTATTGATGCCAATAGTTTACTTTATATGTTCCGACATATGTGTGGCATTTTGTAAAATAAGCTAGTAATTTTGTTGTGAAGAACTATTGTGTTATTATATCGATGACAACTCTTTGAAGGCCACAAGAAGCACAATTTCGTACAAGAATACTAATCAAATGACAGAGCTATATGAAACTGAATATATAATCTCATCTTGGATGTAAGTATGTAAGTTTTATCTAGTAAGTGTCGATAGAATGCAGCTCTACTTAGCTGTATGTCCTGTTTCAAGGCATAGAACTCGAAGTTTAGGTATTACAAGTGCGGTCCCGCCAATCTTCAAGCATTCACCTTTTGTATAAAGAAACCATAGGAGGCAACTGATTAATCTCTTACAACCATTAGGTGCTCCTGCTTGAGATTGTTGTCATATAGATTACACGAAAATTATAAATGTATACTGCAGCAATAATGTTTCTTTCTGTAAGCTTTGATGTCCCCAGGCTTATGGTGTGCCTGTAATGAAGTAGAAAACCTTTTTCTGATTTAAGCTTGGGGAGGAAAAGCCAAACACAAAAAATGGAACAAAATCTTATATGTGATGGTTGTCAATTCACAAGTAGGCTTGTCGCGGGACACCTTTGAATTCAAATGTGCTCCTC
>Glyma03g00440.1 sequence type=CDS gene model=Glyma03g00440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACACAACACACACAAACAGTGAATATGAAGATTGGAAGAGCATTGATATAGCAGATTCTATCTTAAGTTATGGAAGTGAATTGGGAGACATGGAAGAAAATGAATGGCAGATGGTGCAAACGAAAGGAAACCAATTTGTGGTGAACGACCAACCTTTCTATGTTAATGGATTCAACACATACTGGTTGATGGTATTTGCTGCGGATGAGTCCACAAGAGGGAAGGTCACTGAGGTGTTCAAACATGCATCCTCTGTGGGTATGTCAGTTTGTAGGACTTGGGCCTTCAATGATGGCCAATGGCGTGCTCTTCAGAAATCTCCATCAGTTTATGATGAAGACGTATTCAAGGCCTTGGACTTTGTGGTAAGTGAAGCAAGGAAATACAAAATCAGGCTCATATTATCACTGGTTAACAACTGGGAGGCTTATGGTGGCAAACCACAGTATGTGAAGTGGGGCAATGCAGCTGGCCTTAACTTGACCTCTGATGATGACTTCTTTTCACATCCAACTCTCAGAAGCTACTACAAGGCTCATGTTAAGACGGTGCTCAATAGAGTTAATACATTCACAAATATCACTTACAAGGAAGATCCAACAATTTTTGCTTGGGAACTGATGAATGAGCCTCGATGCACCTCAGACTCCTCAGGTGATGTGTTACAGGATTGGATAAAAGAAATGGCATTCTATGTGAAGAGCATTGATCCAAAACACCTAGTGGAGATTGGACTAGAAGGATTTTATGGCCCCTCAACACCTCAGAAATATCAGTTCAACCCAAATTCATATGCTCATGAGGTTGGAACTGATTTTATCAGGAACCACCAGGTTCTAGGTGTTGACTTCGCTTCTGTTCACATATATCCAGACTCTTGGATTTCACAATCAGTTGCAGATTCCCATCTCCCATTCATAAAGACTTGGATGGAAGCCCACATAGAGGATGCTGAAAAGTATCTTGGAATGCCCGTTGTTTTTGCTGAGTTTGGTGTATCTGCAAAAGCTCCTGGCTACAATTCAACATATAGAGACAACCTTATAAACACTGTGTACAAGACCATCCTGAACTCTACAAAGAAAGGAGGTAGTGGGGCTGGAAGCCTTGTGTGGCAGCTCTTTCCTGACGGAACGGATTACATGGATGATGGCTATGCAATTGTTCTCTCAAAGTCACCTTCCACGTCAAGCATTATATCCCTTCAATCCACAAGGCTAGCCCTCTTCAATTCCCTGTGTTCTAAGAAATGCCGTTGGGGTTGTAAGAAAAGAAATGTGTTGGAAAAAGTACTCTATCATGACGAACTGTAA >Glyma03g00440.2 sequence type=CDS gene model=Glyma03g00440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACACAACACACACAAACAGTGAATATGAAGATTGGAAGAGCATTGATATAGCAGATTCTATCTTAAGTTATGGTGAATTGGGAGACATGGAAGAAAATGAATGGCAGATGGTGCAAACGAAAGGAAACCAATTTGTGGTGAACGACCAACCTTTCTATGTTAATGGATTCAACACATACTGGTTGATGGTATTTGCTGCGGATGAGTCCACAAGAGGGAAGGTCACTGAGGTGTTCAAACATGCATCCTCTGTGGGTATGTCAGTTTGTAGGACTTGGGCCTTCAATGATGGCCAATGGCGTGCTCTTCAGAAATCTCCATCAGTTTATGATGAAGACGTATTCAAGGCCTTGGACTTTGTGGTAAGTGAAGCAAGGAAATACAAAATCAGGCTCATATTATCACTGGTTAACAACTGGGAGGCTTATGGTGGCAAACCACAGTATGTGAAGTGGGGCAATGCAGCTGGCCTTAACTTGACCTCTGATGATGACTTCTTTTCACATCCAACTCTCAGAAGCTACTACAAGGCTCATGTTAAGACGGTGCTCAATAGAGTTAATACATTCACAAATATCACTTACAAGGAAGATCCAACAATTTTTGCTTGGGAACTGATGAATGAGCCTCGATGCACCTCAGACTCCTCAGGTGATGTGTTACAGGATTGGATAAAAGAAATGGCATTCTATGTGAAGAGCATTGATCCAAAACACCTAGTGGAGATTGGACTAGAAGGATTTTATGGCCCCTCAACACCTCAGAAATATCAGTTCAACCCAAATTCATATGCTCATGAGGTTGGAACTGATTTTATCAGGAACCACCAGGTTCTAGGTGTTGACTTCGCTTCTGTTCACATATATCCAGACTCTTGGATTTCACAATCAGTTGCAGATTCCCATCTCCCATTCATAAAGACTTGGATGGAAGCCCACATAGAGGATGCTGAAAAGTATCTTGGAATGCCCGTTGTTTTTGCTGAGTTTGGTGTATCTGCAAAAGCTCCTGGCTACAATTCAACATATAGAGACAACCTTATAAACACTGTGTACAAGACCATCCTGAACTCTACAAAGAAAGGAGGTAGTGGGGCTGGAAGCCTTGTGTGGCAGCTCTTTCCTGACGGAACGGATTACATGGATGATGGCTATGCAATTGTTCTCTCAAAGTCACCTTCCACGTCAAGCATTATATCCCTTCAATCCACAAGGCTAGCCCTCTTCAATTCCCTGTGTTCTAAGAAATGCCGTTGGGGTTGTAAGAAAAGAAATGTGTTGGAAAAAGTACTCTATCATGACGAACTGTAA >Glyma03g00440.3 sequence type=CDS gene model=Glyma03g00440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAACACACAAGAGATTTGGATTACGTACTATTATTACCTTGGTCCTTTTTCTGACTCTTACTAAAAGTCTAAGCTCAACTGCATTTGATGTTAGTGAATATGAAGATTGGAAGAGCATTGATATAGCAGATTCTATCTTAAGTTATGGAAGTGAATTGGGAGACATGGAAGAAAATGAATGGCAGATGGTGCAAACGAAAGGAAACCAATTTGTGGTGAACGACCAACCTTTCTATGTTAATGGATTCAACACATACTGGTTGATGGTATTTGCTGCGGATGAGTCCACAAGAGGGAAGGTCACTGAGGTGTTCAAACATGCATCCTCTGTGGGTATGTCAGTTTGTAGGACTTGGGCCTTCAATGATGGCCAATGGCGTGCTCTTCAGAAATCTCCATCAGTTTATGATGAAGACGTATTCAAGGCCTTGGACTTTGTGGTAAGTGAAGCAAGGAAATACAAAATCAGGCTCATATTATCACTGGTTAACAACTGGGAGGCTTATGGTGGCAAACCACAGTATGTGAAGTGGGGCAATGCAGCTGGCCTTAACTTGACCTCTGATGATGACTTCTTTTCACATCCAACTCTCAGAAGCTACTACAAGGCTCATGTTAAGACGGTGCTCAATAGAGTTAATACATTCACAAATATCACTTACAAGGAAGATCCAACAATTTTTGCTTGGGAACTGATGAATGAGCCTCGATGCACCTCAGACTCCTCAGGTGATGTGTTACAGGATTGGATAAAAGAAATGGCATTCTATGTGAAGAGCATTGATCCAAAACACCTAGTGGAGATTGGACTAGAAGGATTTTATGGCCCCTCAACACCTCAGAAATATCAGTTCAACCCAAATTCATATGCTCATGAGGTTGGAACTGATTTTATCAGGAACCACCAGGTTCTAGGTGTTGACTTCGCTTCTGTTCACATATATCCAGACTCTTGGATTTCACAATCAGTTGCAGATTCCCATCTCCCATTCATAAAGACTTGGATGGAAGCCCACATAGAGGATGCTGAAAAGTATCTTGGAATGCCCGTTGTTTTTGCTGAGTTTGGTGTATCTGCAAAAGCTCCTGGCTACAATTCAACATATAGAGACAACCTTATAAACACTGTGTACAAGACCATCCTGAACTCTACAAAGAAAGGAGGTAGTGGGGCTGGAAGCCTTGTGTGGCAGCTCTTTCCTGACGGAACGGATTACATGGATGATGGCTATGCAATTGTTCTCTCAAAGTCACCTTCCACGTCAAGCATTATATCCCTTCAATCCACAAGGCTAGCCCTCTTCAATTCCCTGTGTTCTAAGAAATGCCGTTGGGGTTGTAAGAAAAGAAATGTGTTGGAAAAAGTACTCTATCATGACGAACTGTAA
>Glyma03g00440.1 sequence type=predicted peptide gene model=Glyma03g00440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDTTHTNSEYEDWKSIDIADSILSYGSELGDMEENEWQMVQTKGNQFVVNDQPFYVNGFNTYWLMVFAADESTRGKVTEVFKHASSVGMSVCRTWAFNDGQWRALQKSPSVYDEDVFKALDFVVSEARKYKIRLILSLVNNWEAYGGKPQYVKWGNAAGLNLTSDDDFFSHPTLRSYYKAHVKTVLNRVNTFTNITYKEDPTIFAWELMNEPRCTSDSSGDVLQDWIKEMAFYVKSIDPKHLVEIGLEGFYGPSTPQKYQFNPNSYAHEVGTDFIRNHQVLGVDFASVHIYPDSWISQSVADSHLPFIKTWMEAHIEDAEKYLGMPVVFAEFGVSAKAPGYNSTYRDNLINTVYKTILNSTKKGGSGAGSLVWQLFPDGTDYMDDGYAIVLSKSPSTSSIISLQSTRLALFNSLCSKKCRWGCKKRNVLEKVLYHDEL* >Glyma03g00440.2 sequence type=predicted peptide gene model=Glyma03g00440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDTTHTNSEYEDWKSIDIADSILSYGELGDMEENEWQMVQTKGNQFVVNDQPFYVNGFNTYWLMVFAADESTRGKVTEVFKHASSVGMSVCRTWAFNDGQWRALQKSPSVYDEDVFKALDFVVSEARKYKIRLILSLVNNWEAYGGKPQYVKWGNAAGLNLTSDDDFFSHPTLRSYYKAHVKTVLNRVNTFTNITYKEDPTIFAWELMNEPRCTSDSSGDVLQDWIKEMAFYVKSIDPKHLVEIGLEGFYGPSTPQKYQFNPNSYAHEVGTDFIRNHQVLGVDFASVHIYPDSWISQSVADSHLPFIKTWMEAHIEDAEKYLGMPVVFAEFGVSAKAPGYNSTYRDNLINTVYKTILNSTKKGGSGAGSLVWQLFPDGTDYMDDGYAIVLSKSPSTSSIISLQSTRLALFNSLCSKKCRWGCKKRNVLEKVLYHDEL* >Glyma03g00440.3 sequence type=predicted peptide gene model=Glyma03g00440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high METHKRFGLRTIITLVLFLTLTKSLSSTAFDVSEYEDWKSIDIADSILSYGSELGDMEENEWQMVQTKGNQFVVNDQPFYVNGFNTYWLMVFAADESTRGKVTEVFKHASSVGMSVCRTWAFNDGQWRALQKSPSVYDEDVFKALDFVVSEARKYKIRLILSLVNNWEAYGGKPQYVKWGNAAGLNLTSDDDFFSHPTLRSYYKAHVKTVLNRVNTFTNITYKEDPTIFAWELMNEPRCTSDSSGDVLQDWIKEMAFYVKSIDPKHLVEIGLEGFYGPSTPQKYQFNPNSYAHEVGTDFIRNHQVLGVDFASVHIYPDSWISQSVADSHLPFIKTWMEAHIEDAEKYLGMPVVFAEFGVSAKAPGYNSTYRDNLINTVYKTILNSTKKGGSGAGSLVWQLFPDGTDYMDDGYAIVLSKSPSTSSIISLQSTRLALFNSLCSKKCRWGCKKRNVLEKVLYHDEL*
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