SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G20280 | AT | Annotation by Michelle Graham. TAIR10: TBP-associated factor 11 | chr4:10953792-10954664 FORWARD LENGTH=210 | SoyBase | E_val: 8.00E-63 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0006351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0006367 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription initiation from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| KOG3219 | KOG | Transcription initiation factor TFIID, subunit TAF11 | JGI | ISS | |
| PTHR13218 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR13218:SF5 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF04719 | PFAM | hTAFII28-like protein conserved region | JGI | ISS | |
| UniRef100_B9T387 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription initiation factor TFIID subunit, putative n=1 Tax=Ricinus communis RepID=B9T387_RICCO | SoyBase | E_val: 1.00E-72 | ISS |
| UniRef100_C6SV90 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SV90_SOYBN | SoyBase | E_val: 5.00E-99 | ISS |
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Glyma03g00420 not represented in the dataset |
Glyma03g00420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g001900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g00420.2 sequence type=transcript gene model=Glyma03g00420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTTAGCCAAAATAAAAAGGGGGAAGTTGTATGTGTATCCCTTCCTTCCGGTCTGAAACAAAAGGAAAGGATGAAGCAATCAAAGGATCCGTTCGAAGCAGCGTTCGAGGAATCGCCGCCAGAATCCCCAACGGCTACGGAGACAGAGGAGGAGGACAACATGGACGTGGAGCTCGCCAAGCTCCCTTCCACCGGCGACCCTCACAAAATGGCCAAGATGCAGGCCATTTTGTCGCAATTCACCGAAGAGCAGATGAGTCGATACGAGTCCTTCCGGAGGGCTGGCTTTCAGAAAGCCAACATGAAAAGGTTATTGGCTAGCATCACTGGGACCCAGAAAATTTCTGTGCCCATGACGATTGTTGTATCGGGCATTGCAAAAATGTTTGTTGGTGAAGTTGTTGAAACAGCTAGAATAGTTATGAAAGAGAGGAAGGAATCTGGACCAATCCGGCCTTGTCATCTGAGAGAAGCATATAGACGACTAAAGCTTGAAGGAAAAGTCTTTAAGAGATCATCCTCGAGGCTCTTCCGGTAGATGAACCAAATATGAATATTGTGTGCATCAGCTTCACTAGTTTGCTATAGTGGCTTTCGGGTAGATTAAATTTTGTAGTCTGCACCTTCTTGTTTTCAACATCTTGACGTTCATTTAACTGGAGCTAGTGAATGTGAATCAATATTAGAAGTAAATTGGGAAAATTTCCCCATTTCTGCAAATAAGAAATGTGCAATGGACACATGTTTAGGACCCAACATCTTTTCTCTTACTTTGTTAGAAAACATAGTGCATGTTTGGATCGAAGTTAAAAATATTATGGGCACGTTCCAATGTAAATCCAACAGATAAAAACAAAATAAAAGCAAAAGCCATGGTCTTGCTCCTTTGGCAAAATTACTTTTGCCTCAAAAGTAATTTTTCACCTGAAAACCAAACATGCACATAGTCATGGTGAAAAGTTGGTTGCTCGATTGGGTTACCATTGGGAACGGATGCTGAAAGTATGTTGTGTTGGGAGAAGCATACCATGAGTATCTCTTGCTCCAAAAGTAAGTTCTGACTCTTCAAAACATATCACTATTCTCTTGTAGCGCTTAATTTTCTTGTTGGTTCCTCAAATCAATATAGTAGAAAAGAATCTATCCAAGTTGTCTAGTTTAATATTTTTGCCCTTGAAAAAAGTTTGATCATGCTCGCGTTACATGTGAATCCCATGCCATGTCTCTTGTAATCAGTCTGATATGCACTATCAAAAGAAACAAACTTCCACTTAATCATGTCTCTTTGCCACATCTAAAAGATTGAGCTCCCTAGTACATTTGTCATGTTTATTGCCTT >Glyma03g00420.3 sequence type=transcript gene model=Glyma03g00420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTTAGCCAAAATAAAAAGGGGGAAGTTGTATGTGTATCCCTTCCTTCCGGTCTGAAACAAAAGGAAAGGATGAAGCAATCAAAGGATCCGTTCGAAGCAGCGTTCGAGGAATCGCCGCCAGAATCCCCAACGGCTACGGAGACAGAGGCAGAGACGCAAAACCCTACTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTTTTCTGGTGTTGCTGTAGTAGCACTGAATCCACAACAACCTCAGAATCAGAAAGTGAAGAACAAAGACAATGAGGAAGAGGAGGAGGAGGAGGACAACATGGACGTGGAGCTCGCCAAGCTCCCTTCCACCGGCGACCCTCACAAAATGGCCAAGATGCAGGCCATTTTGTCGCAATTCACCGAAGAGCAGATGAGTCGATACGAGTCCTTCCGGAGGGCTGGCTTTCAGAAAGCCAACATGAAAAGGTTATTGGCTAGCATCACTGGGACCCAGAAAATTTCTGTGCCCATGACGATTGTTGTATCGGGCATTGCAAAAATGTTTGTTGGTGAAGTTGTTGAAACAGCTAGAATAGTTATGAAAGAGAGGAAGGAATCTGGACCAATCCGGCCTTGTCATCTGAGAGAAGCATATAGACGACTAAAGCTTGAAGGAAAAGTCTTTAAGAGATCATCCTCGAGGCTCTTCCGGTAGATGAACCAAATATGAATATTGTGTGCATCAGCTTCACTAGTTTGCTATAGTGGCTTTCGGGTAGATTAAATTTTGTAGTCTGCACCTTCTTGTTTTCAACATCTTGACGTTCATTTAACTGGAGCTAGTGAATGTGAATCAATATTAGAAGTAAATTGGGAAAATTTCCCCATTTCTGCAAATAAGAAATGTGCAATGGACACATGTTTAGGACCCAACATCTTTTCTCTTACTTTGTTAGAAAACATAGTGCATGTTTGGATCGAAGTTAAAAATATTATGGGCACGTTCCAATGTAAATCCAACAGATAAAAACAAAATAAAAGCAAAAGCCATGGTCTTGCTCCTTTGGCAAAATTACTTTTGCCTCAAAAGTAATTTTTCACCTGAAAACCAAACATGCACATAGTCATGGTGAAAAGTTGGTTGCTCGATTGGGTTACCATTGGGAACGGATGCTGAAAGTATGTTGTGTTGGGAGAAGCATACCATGAGTATCTCTTGCTCCAAAAGTAAGTTCTGACTCTTCAAAACATATCACTATTCTCTTGTAGCGCTTAATTTTCTTGTTGGTTCCTCAAATCAATATAGTAGAAAAGAATCTATCCAAGTTGTCTAGTTTAATATTTTTGCCCTTGAAAAAAGTTTGATCATGCTCGCGTTACATGTGAATCCCATGCCATGTCTCTTGTAATCAGTCTGATATGCACTATCAAAAGAAACAAACTTCCACTTAATCATGTCTCTTTGCCACATCTAAAAGATTGAGCTCCCTAGTACATTTGTCATGTTTATTGCCTT
>Glyma03g00420.1 sequence type=CDS gene model=Glyma03g00420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCAATCAAAGGATCCGTTCGAAGCAGCGTTCGAGGAATCGCCGCCAGAATCCCCAACGGCTACGGAGACAGAGGAGGAGGAGGACAACATGGACGTGGAGCTCGCCAAGCTCCCTTCCACCGGCGACCCTCACAAAATGGCCAAGATGCAGGCCATTTTGTCGCAATTCACCGAAGAGCAGATGAGTCGATACGAGTCCTTCCGGAGGGCTGGCTTTCAGAAAGCCAACATGAAAAGGTTATTGGCTAGCATCACTGGGACCCAGAAAATTTCTGTGCCCATGACGATTGTTGTATCGGGCATTGCAAAAATGTTTGTTGGTGAAGTTGTTGAAACAGCTAGAATAGTTATGAAAGAGAGGAAGGAATCTGGACCAATCCGGCCTTGTCATCTGAGAGAAGCATATAGACGACTAAAGCTTGAAGGAAAAGTCTTTAAGAGATCATCCTCGAGGCTCTTCCGGTAG >Glyma03g00420.2 sequence type=CDS gene model=Glyma03g00420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCAATCAAAGGATCCGTTCGAAGCAGCGTTCGAGGAATCGCCGCCAGAATCCCCAACGGCTACGGAGACAGAGGAGGAGGACAACATGGACGTGGAGCTCGCCAAGCTCCCTTCCACCGGCGACCCTCACAAAATGGCCAAGATGCAGGCCATTTTGTCGCAATTCACCGAAGAGCAGATGAGTCGATACGAGTCCTTCCGGAGGGCTGGCTTTCAGAAAGCCAACATGAAAAGGTTATTGGCTAGCATCACTGGGACCCAGAAAATTTCTGTGCCCATGACGATTGTTGTATCGGGCATTGCAAAAATGTTTGTTGGTGAAGTTGTTGAAACAGCTAGAATAGTTATGAAAGAGAGGAAGGAATCTGGACCAATCCGGCCTTGTCATCTGAGAGAAGCATATAGACGACTAAAGCTTGAAGGAAAAGTCTTTAAGAGATCATCCTCGAGGCTCTTCCGGTAG >Glyma03g00420.3 sequence type=CDS gene model=Glyma03g00420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCAATCAAAGGATCCGTTCGAAGCAGCGTTCGAGGAATCGCCGCCAGAATCCCCAACGGCTACGGAGACAGAGGCAGAGACGCAAAACCCTACTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTTTTCTGGTGTTGCTGTAGTAGCACTGAATCCACAACAACCTCAGAATCAGAAAGTGAAGAACAAAGACAATGAGGAAGAGGAGGAGGAGGAGGACAACATGGACGTGGAGCTCGCCAAGCTCCCTTCCACCGGCGACCCTCACAAAATGGCCAAGATGCAGGCCATTTTGTCGCAATTCACCGAAGAGCAGATGAGTCGATACGAGTCCTTCCGGAGGGCTGGCTTTCAGAAAGCCAACATGAAAAGGTTATTGGCTAGCATCACTGGGACCCAGAAAATTTCTGTGCCCATGACGATTGTTGTATCGGGCATTGCAAAAATGTTTGTTGGTGAAGTTGTTGAAACAGCTAGAATAGTTATGAAAGAGAGGAAGGAATCTGGACCAATCCGGCCTTGTCATCTGAGAGAAGCATATAGACGACTAAAGCTTGAAGGAAAAGTCTTTAAGAGATCATCCTCGAGGCTCTTCCGGTAG
>Glyma03g00420.1 sequence type=predicted peptide gene model=Glyma03g00420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKQSKDPFEAAFEESPPESPTATETEEEEDNMDVELAKLPSTGDPHKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASITGTQKISVPMTIVVSGIAKMFVGEVVETARIVMKERKESGPIRPCHLREAYRRLKLEGKVFKRSSSRLFR* >Glyma03g00420.2 sequence type=predicted peptide gene model=Glyma03g00420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKQSKDPFEAAFEESPPESPTATETEEEDNMDVELAKLPSTGDPHKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASITGTQKISVPMTIVVSGIAKMFVGEVVETARIVMKERKESGPIRPCHLREAYRRLKLEGKVFKRSSSRLFR* >Glyma03g00420.3 sequence type=predicted peptide gene model=Glyma03g00420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKQSKDPFEAAFEESPPESPTATETEAETQNPTPPPPPPPPPSSFSGVAVVALNPQQPQNQKVKNKDNEEEEEEEDNMDVELAKLPSTGDPHKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASITGTQKISVPMTIVVSGIAKMFVGEVVETARIVMKERKESGPIRPCHLREAYRRLKLEGKVFKRSSSRLFR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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