Glyma03g00410 - SoyBase

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Report for Sequence Feature Glyma03g00410

Feature Type:	gene_model
Chromosome:	Gm03
Start:	200555
stop:	204029
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g00410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G08710	AT	Annotation by Michelle Graham. TAIR10: thioredoxin H-type 9 \| chr3:2645590-2646304 FORWARD LENGTH=140	SoyBase	E_val: 3.00E-66	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006662	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycerol ether metabolic process	SoyBase	N/A	ISS
GO:0007154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell communication	SoyBase	N/A	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0015035	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity	SoyBase	N/A	ISS
KOG0907	KOG	Thioredoxin	JGI		ISS
PTHR10438	Panther	THIOREDOXIN-RELATED	JGI		ISS
PF00085	PFAM	Thioredoxin	JGI		ISS
UniRef100_C6T3S7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Thioredoxin n=1 Tax=Glycine max RepID=C6T3S7_SOYBN	SoyBase	E_val: 4.00E-90	ISS
UniRef100_I1JJZ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJZ5_SOYBN	SoyBase	E_val: 1.00E-108	ISS

Expression Patterns of Glyma03g00410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g00410 not represented in the dataset	Glyma03g00410 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g00410

Paralog	Evidence	Comments
Glyma16g34660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g00410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g001800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g00410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g00410

Limit To All Plant Sequences

>Glyma03g00410.2   sequence type=transcript   gene model=Glyma03g00410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAGTAATTTCGTAAAGTCATTGTTTGTTGTCTCAATTGATTATACGTTTCAATTATATCAATTCTTAAATAAGTAAATAAATAATCATGTCTGAAAATTTAATCGACTCCAGAATCGAATTCATTACTATACAACTTTTTGTGTTGGGAACGAAAAATACATTTATTTAATTCTGAAACGCTCTTTATCTTCTCTTCCTCCTCATAGGCCTTACTATGACCTCACTCACGCATTGAAGAAGGCAACGCTCCTTGCAGCTCAAATCTGCAAATTAGGCTTTTTTTCCCCCCAACAGTGGGTTTTGCTTTTCTCTGGAATTTTAAGTTTTGGGGTTTTCTTTCAATCAGGGTTCAGTTTATTCAAGTTTTACAATTTCGCGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGTAAGGCTCAAGCGGATGATGATTCTGATCATAATGTGGAGTTTGCTTCTGGGAATGTGCAAGTTATTACTACCAAAGAATCTTGGGACCAAAAGTTGGAACAAGCGAGGAGGGACAGTAAAATTGTTATTGCAAATTTCAGTGCCACATGGTGTGGTCCTTGTAAGATGATTGCACCATATTATTGCGAGTTGTCCGAGAAATACCCATCTATCATGTTCTTATTAGTCGATGTGGATGAACTAGCTGACTTCAGCACTTTATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTTAAAGATGGAAAAGAGGTTGACAAACTTGTAGGAGCCAACAAGCCAGAGCTGGAGAAGAAGATTGTTGTGATTAATGATGCAGTGCCTCATAAGCAATAGTGATCGTCGTTGTTGTTGTTGTTGTAGATCTATTCATAGAAGCTCTGCTCTTCTCTTCTCTTCTCTTCTCTCTTCATATGGCAGTGCGTATTCTGCATGTCTTTCAATACCGTGACATTGTCATTGTATTTCTTTTTTAATGTAAATATATGACGTTTCAAATGAATGTTTTGCATTCAAAATTTCAACATGTTGTCACTGTGGTATCTTTGAAATATAATGTATTGGTGTGCCTTATCCTTATTTGAGTCATTATTGTTATAAGAACCCCTTTCACAAA

>Glyma03g00410.3   sequence type=transcript   gene model=Glyma03g00410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAGTAATTTCGTAAAGTCATTGTTTGTTGTCTCAATTGATTATACGTTTCAATTATATCAATTCTTAAATAAGTAAATAAATAATCATGTCTGAAAATTTAATCGACTCCAGAATCGAATTCATTACTATACAACTTTTTGTGTTGGGAACGAAAAATACATTTATTTAATTCTGAAACGCTCTTTATCTTCTCTTCCTCCTCATAGGCCTTACTATGACCTCACTCACGCATTGAAGAAGGCAACGCTCCTTGCAGCTCAAATCTGCAAATTAGGCTTTTTTTCCCCCCAACAGTGGGTTTTGCTTTTCTCTGGAATTTTAAGTTTTGGGGTTTTCTTTCAATCAGGGTTCAGTTTATTCAAGTTTTACAATTTCGCGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGTAAGGCTCAAGCGGATGATGATTCTGATCATAATGTGGAGTTTGCTTCTGGGAATGTGCAAGTTATTACTACCAAAGAATCTTGGGACCAAAAGTTGGAACAAGCGAGGAGGGACAGTAAAATTGACTTCAGCACTTTATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTTAAAGATGGAAAAGAGGTTGACAAACTTGTAGGAGCCAACAAGCCAGAGCTGGAGAAGAAGATTGTTGTGATTAATGATGCAGTGCCTCATAAGCAATAGTGATCGTCGTTGTTGTTGTTGTTGTAGATCTATTCATAGAAGCTCTGCTCTTCTCTTCTCTTCTCTTCTCTCTTCATATGGCAGTGCGTATTCTGCATGTCTTTCAATACCGTGACATTGTCATTGTATTTCTTTTTTAATGTAAATATATGACGTTTCAAATGAATGTTTTGCATTCAAAATTTCAACATGTTGTCACTGTGGTATCTTTGAAATATAATGTATTGGTGTGCCTTATCCTTATTTGAGTCATTATTGTTATAAGAACCCCTTTCACAAA

Coding sequences of Glyma03g00410

Limit To All Plant Sequences

>Glyma03g00410.1   sequence type=CDS   gene model=Glyma03g00410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCTTTTGCTTGCAACATCTAGAACCTATACTTTTACATCTTCAGTTTGCCTTCCTGGACTGCATTGCTCAAGCGGATGATGATTCTGATCATAATGTGGAGTTTGCTTCTGGGAATGTGCAAGTTATTACTACCAAAGAATCTTGGGACCAAAAGTTGGAACAAGCGAGGAGGGACAGTAAAATTGTTATTGCAAATTTCAGTGCCACATGGTGTGGTCCTTGTAAGATGATTGCACCATATTATTGCGAGTTGTCCGAGAAATACCCATCTATCATGTTCTTATTAGTCGATGTGGATGAACTAGCTGACTTCAGCACTTTATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTTAAAGATGGAAAAGAGGTTGACAAACTTGTAGGAGCCAACAAGCCAGAGCTGGAGAAGAAGATTGTTGTGATTAATGATGCAGTGCCTCATAAGCAATAG

>Glyma03g00410.2   sequence type=CDS   gene model=Glyma03g00410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAATTGTTTGCGTAAGGCTCAAGCGGATGATGATTCTGATCATAATGTGGAGTTTGCTTCTGGGAATGTGCAAGTTATTACTACCAAAGAATCTTGGGACCAAAAGTTGGAACAAGCGAGGAGGGACAGTAAAATTGTTATTGCAAATTTCAGTGCCACATGGTGTGGTCCTTGTAAGATGATTGCACCATATTATTGCGAGTTGTCCGAGAAATACCCATCTATCATGTTCTTATTAGTCGATGTGGATGAACTAGCTGACTTCAGCACTTTATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTTAAAGATGGAAAAGAGGTTGACAAACTTGTAGGAGCCAACAAGCCAGAGCTGGAGAAGAAGATTGTTGTGATTAATGATGCAGTGCCTCATAAGCAATAG

>Glyma03g00410.3   sequence type=CDS   gene model=Glyma03g00410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAATTGTTTGCGTAAGGCTCAAGCGGATGATGATTCTGATCATAATGTGGAGTTTGCTTCTGGGAATGTGCAAGTTATTACTACCAAAGAATCTTGGGACCAAAAGTTGGAACAAGCGAGGAGGGACAGTAAAATTGACTTCAGCACTTTATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTTAAAGATGGAAAAGAGGTTGACAAACTTGTAGGAGCCAACAAGCCAGAGCTGGAGAAGAAGATTGTTGTGATTAATGATGCAGTGCCTCATAAGCAATAG

Predicted protein sequences of Glyma03g00410

Limit To All Plant Sequences

>Glyma03g00410.1   sequence type=predicted peptide   gene model=Glyma03g00410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFCLQHLEPILLHLQFAFLDCIAQADDDSDHNVEFASGNVQVITTKESWDQKLEQARRDSKIVIANFSATWCGPCKMIAPYYCELSEKYPSIMFLLVDVDELADFSTLWDIKATPTFFFLKDGKEVDKLVGANKPELEKKIVVINDAVPHKQ*

>Glyma03g00410.2   sequence type=predicted peptide   gene model=Glyma03g00410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNCLRKAQADDDSDHNVEFASGNVQVITTKESWDQKLEQARRDSKIVIANFSATWCGPCKMIAPYYCELSEKYPSIMFLLVDVDELADFSTLWDIKATPTFFFLKDGKEVDKLVGANKPELEKKIVVINDAVPHKQ*

>Glyma03g00410.3   sequence type=predicted peptide   gene model=Glyma03g00410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNCLRKAQADDDSDHNVEFASGNVQVITTKESWDQKLEQARRDSKIDFSTLWDIKATPTFFFLKDGKEVDKLVGANKPELEKKIVVINDAVPHKQ*

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