Glyma03g00380 - SoyBase

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Report for Sequence Feature Glyma03g00380

Feature Type:	gene_model
Chromosome:	Gm03
Start:	170172
stop:	173533
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g00380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38600	AT	Annotation by Michelle Graham. TAIR10: HAD superfamily, subfamily IIIB acid phosphatase \| chr2:16145907-16146857 FORWARD LENGTH=251	SoyBase	E_val: 4.00E-95	ISS
GO:0003993	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity	SoyBase	N/A	ISS
PTHR11726	Panther	60S RIBOSOMAL PROTEIN L10	JGI		ISS
PTHR11726:SF1	Panther	50S RIBOSOMAL PROTEIN L10E	JGI		ISS
PF03767	PFAM	HAD superfamily, subfamily IIIB (Acid phosphatase)	JGI		ISS
UniRef100_Q8S8Z7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Syringolide-induced protein B15-3-5 n=1 Tax=Glycine max RepID=Q8S8Z7_SOYBN	SoyBase	E_val: 6.00E-175	ISS
UniRef100_Q8S8Z7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Syringolide-induced protein B15-3-5 n=1 Tax=Glycine max RepID=Q8S8Z7_SOYBN	SoyBase	E_val: 6.00E-175	ISS

Expression Patterns of Glyma03g00380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g00380

Paralog	Evidence	Comments
Glyma16g34720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g00380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g001500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g00380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g00380

Limit To All Plant Sequences

>Glyma03g00380.1   sequence type=CDS   gene model=Glyma03g00380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCAAAAGGGTCATGAGAAGAAAATTGAAAAACCAGATGATGAGTCAGAGAGCTATGGTCGGAGTTGGAGGCTAACGGTTGAAGCAAACAATGCGCGTCCATGGAGGATTGTTCCAGACAACTGCTACAACCACCTTCAGAACTACATGTCTGGTGGACAATACCAGCTTGACCTTAACCTCGTCGTCCAACATATCTTGTCCTATGCCCATGAGATTCCTCTTGCTGCCGACGGCATGGATGCCTGGATTTTGGATGTTGATGACACTTGCATCTCCAACATTGATTATTACAAAGGAAGGCGATTCGGGTGCGACCCATTTGACTCAGCGATATTCAAGGCATGGATTATGAAGGGAAAGTGTCCCGCAAATCCTGCCGTGCTAGAACTGTTTAACGCCTTGATAAAGAAAGGATTCAAAGTGTTCTTGCTTACTGGTAGAGACCAAGCAACTCTCGCTCAAATCACCACTAACAACTTGCGTAACCAGGGATTCATCGGCTACCAACGTCTTATTCTCAGGAGTGCTCAATACAAAGGACAAAGTGCAGTGAGATACAAGTCAGCAATTCGGAAGGAGATAGAAGGAGAAGGGTACAGGATACGGGGAAATGTGGGAGACCAGTGGAGTGATCTTCAAGGAGAGTGTTTGGGCAATCGTACATTCAAGCTCCCTAATCCCATGTATTTCATTTCTTGA

Predicted protein sequences of Glyma03g00380

Limit To All Plant Sequences

>Glyma03g00380.1   sequence type=predicted peptide   gene model=Glyma03g00380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNQKGHEKKIEKPDDESESYGRSWRLTVEANNARPWRIVPDNCYNHLQNYMSGGQYQLDLNLVVQHILSYAHEIPLAADGMDAWILDVDDTCISNIDYYKGRRFGCDPFDSAIFKAWIMKGKCPANPAVLELFNALIKKGFKVFLLTGRDQATLAQITTNNLRNQGFIGYQRLILRSAQYKGQSAVRYKSAIRKEIEGEGYRIRGNVGDQWSDLQGECLGNRTFKLPNPMYFIS*

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