Glyma03g00350 - SoyBase

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Report for Sequence Feature Glyma03g00350

Feature Type:	gene_model
Chromosome:	Gm03
Start:	148485
stop:	153845
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g00350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77030	AT	Annotation by Michelle Graham. TAIR10: hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases \| chr1:28947887-28951526 REVERSE LENGTH=845	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008026	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity	SoyBase	N/A	ISS
GO:0016818	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	SoyBase	N/A	ISS
KOG0337	KOG	ATP-dependent RNA helicase	JGI		ISS
PTHR24031	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24031:SF17	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00270	PFAM	DEAD/DEAH box helicase	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
PF08147	PFAM	DBP10CT (NUC160) domain	JGI		ISS
UniRef100_B9T0X5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9T0X5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JJY8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJY8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g00350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g00350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g001200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g00350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g00350

Limit To All Plant Sequences

>Glyma03g00350.1   sequence type=CDS   gene model=Glyma03g00350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACGCGAAGCGACGAAGAAGAAGAAGATGAATAAGAATGCAAAATCTGGGGGTTTTGAATCACTTGGTCTGAATCCCAATGTGTTCAAAGGAATCAAGCGCAAAGGGTACAAAGTGCCCACTCCGATTCAGCGGAAGACCATGCCCCTCATCCTTTCTGGCTCCGACGTCGTTGCCATGGCTCGCACTGGCTCTGGCAAAACGGCGGCGTTTCTTGTCCCCATGCTTCACCGCCTCAACCAGCATATCCCTCAGTCTGGTGTCAGAGCCCTCATTCTATCCCCTACCAGGGACTTGGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGGCCACTTCACAGACCTTCGTGTTAGTTTGTTAGTTGGTGGAGATAGTATGGAGATTCAGTTTGAGGAATTAGCTCAGAGTCCTGACATCATAATTGCCACTCCTGGTAGGCTCATGCACCATTTGTCTGAGGTTGATGACATGTCATTGCGCAGCGTCGAGTATGTTGTTTTCGACGAGGCTGATTGTTTATTTGGCATGGGTTTCGCCGAGCAGTTGCATCAGATTCTTGCTCAGCTCGGGGAGAACCGTCAGACCTTGCTTTTCAGTGCCACACTGCCCAGTGCCCTTGCTGAATTTGCCAAGGCTGGTTTGAGAGACCCTCAGCTTGTCCGCCTTGACTTAGAAACTAGAATTAGCCCTGACTTGAAGCTTGCCTTCTTCACTTTGAGGCAGGAGGAGAAGTACTCCGCCTTGCTCTATTTGGTTCGGGAGCACATTGGTTCTGATCAGCAGACATTGATTTTTGTGTCCACCAAGCATCATGTGGAGTTTCTCAATGTTTTGTTTCGCGAAGAGGGTATTGAGCCATCTGTGTGTTATGGCGACATGGACCAAGATGCTCGCAAAATCCATGTATCGAGGTTTAGGGCTAGAAAGACAATGTTGTTGATTGTGACAGATGTTGCGGCCCGGGGCATTGACATTCCATTACTTGATAATGTTATCAATTGGGACTTTCCCCCCAAGCCTAAAATATTTGTCCATCGAGTTGGAAGGGCTGCAAGGGCTGGTCGAACTGGGACTGCATATTCTTTTGTGACTCCTGAGGATATGGCTTACCTTTTGGATCTTCATTTGTTTCTTTCGAAACCAATCAAACCTGCTCCCACCGAAGAAGAGTTCTTGCAGGATATGGATGGAGTAATGTCTAGATGTGAACAGGCAATGGCAAATAGAGAAACCATTTATGGTCGTTTCCCACAAAAAGTCATCGACCTTGTTTCAGACAGAGTTAGGGAAATTATTGATACTTCTGCGGAACTGGAATTATTGCAGAGAACCTGTAAAAATGCATTTCGTTTATATTCAAAAACAAAACCCTTACCCGCAAAGGAGTCCATTAGAAGAGTAAAGGATTTGCCTCATGAAGGGCTGCATCCAATGTTCATGAATGTGTTGGAAACAGGGGAGTTAACGGCACTTGCATTTTCTGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACTATTTTGGAAGCTGAAGGGGAAGCAGCTAAATCAAAGCATCAACAGGGCCCTTCTGGCCAATGGGTCGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTTCGTGAACAGCAGCAGTCTAAGAGTAATAAGGAAAAGGAGGAAATTCAATCAGAAATCAGTCCTTCCATGGAGAAAGGAAGAAAAGCACGTGGTTCTAAGAGGAAGCCCCAAAGTTTCAAGGATGAGGATCACTATATAAGTTCAATACCAAAAAATCAACATATGGAGGCTGGCCTTACAGTAAAAGCTAATGAAGACTTTGCTTCTAATAGATTGGAAGCAGCTGTCCTTGATCTAGTGGCAGATGATGGTACTGGCATTAAGAAACAAAGATCTATGTATCACTGGGATAAGAGGGGTAAAAAGTACATCAAGTTAAACAATGGTGACCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACAAAGGCAAACAAGACTGGTATATATAAGAAGTGGAAAGAACGCTCACATGGTAGGATATCACTTAAAGGGACAAATAATGATGGTGATTCTCAGGAATCAACAAGTTTGGCAGGATCTTACCAAAGAGGTCGTAGGAATTTTAAAGGCAGCAAGAAGCAGCATTCAATGCCCAATGCTCATGTGCGTTCAGAGATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGACAAAAGCCAACAGGGTTTCTTATATAAAGAGCAAGTCGACAAAGGGTAAAAAGTTTGGTAAAAATGGTAAAAAAAGAAAAGGCAAATAG

Predicted protein sequences of Glyma03g00350

Limit To All Plant Sequences

>Glyma03g00350.1   sequence type=predicted peptide   gene model=Glyma03g00350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGREATKKKKMNKNAKSGGFESLGLNPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMLHRLNQHIPQSGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMEIQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETRISPDLKLAFFTLRQEEKYSALLYLVREHIGSDQQTLIFVSTKHHVEFLNVLFREEGIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMAYLLDLHLFLSKPIKPAPTEEEFLQDMDGVMSRCEQAMANRETIYGRFPQKVIDLVSDRVREIIDTSAELELLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPHEGLHPMFMNVLETGELTALAFSEHLKKFRPKQTILEAEGEAAKSKHQQGPSGQWVDVMKRKRAIHENIINLVREQQQSKSNKEKEEIQSEISPSMEKGRKARGSKRKPQSFKDEDHYISSIPKNQHMEAGLTVKANEDFASNRLEAAVLDLVADDGTGIKKQRSMYHWDKRGKKYIKLNNGDRVAANGKIKTESGAKTKANKTGIYKKWKERSHGRISLKGTNNDGDSQESTSLAGSYQRGRRNFKGSKKQHSMPNAHVRSEIKDMDQIRKERQTKANRVSYIKSKSTKGKKFGKNGKKRKGK*

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