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Report for Sequence Feature Glyma02g48240

Feature Type:gene_model
Chromosome:Gm02
Start:51654775
stop:51655918
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G01910AT Annotation by Michelle Graham. TAIR10: Microtubule associated protein (MAP65/ASE1) family protein | chr2:417698-420182 FORWARD LENGTH=567 SoyBaseE_val: 8.00E-79ISS
GO:0000226GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization SoyBaseN/AISS
GO:0007020GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule nucleation SoyBaseN/AISS
GO:0051322GO-bp Annotation by Michelle Graham. GO Biological Process: anaphase SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009524GO-cc Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009574GO-cc Annotation by Michelle Graham. GO Cellular Compartment: preprophase band SoyBaseN/AISS
GO:0008017GO-mf Annotation by Michelle Graham. GO Molecular Function: microtubule binding SoyBaseN/AISS
PTHR19321Panther PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED JGI ISS
PF03999PFAM Microtubule associated protein (MAP65/ASE1 family) JGI ISS
UniRef100_B9S7E4UniRef Annotation by Michelle Graham. Most informative UniRef hit: PLE, putative n=1 Tax=Ricinus communis RepID=B9S7E4_RICCO SoyBaseE_val: 2.00E-89ISS
UniRef100_I1L7A6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7A6_SOYBN SoyBaseE_val: 7.00E-118ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g48240 not represented in the dataset

Glyma02g48240 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma02g48240.1   sequence type=CDS   gene model=Glyma02g48240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTGATCGCCTTCAAAAGGTCTTGCAATGCGTGAATGAGGTGCATTCTCTTTGTAGTGTGTTTGGGTTGGATTTTGGTCAGACCGTGGGTGATGTTCACCGAAGTTTGCATGGGACTCAGGTGGAACAGTCGACTAATATTAGCAATAGCACATTGGAAGGTCTAGAGCAGGCCATTCTCAAGTTAAAAATAGAAAGGAAAACTATAATTTCAGAAGCAAAACTATTTGAACTTTGGAATTTGATGGACTCTTCAAAAGAAGAGAGAAACTGTTTTATGAAGATTACTTCTATTGTTGAAACCTCAGAATCAGAAATCACTGAACGAGGTGCTTCAGCAGAAGTGGACAGGCTTGCCAAACTAAAAGCAAGCAGAATGAAAGAACTTGTTTTTAAGAAGAGGTCAGAGTTAGAGGAAATATGTAGATTGATTCATATTGAACCAGATCCAAGTACTGTGGCCGAGAAAGCTAGTGCATTAATAGATTCTGTTGAGCCAAACACATATTTAGACTGGTGGATCCTTCTGAGCTATTTAGCCAAAATAGAAGAACAGATAATTAAGGCAAAAGATGAAGTTTTGAGTAGAAAAGAAGTAACAGATAGGATTGATAAGTTGTTTGCTACATGTGAAGAGGAGAATTGGCTTGACAAATATAAT

>Glyma02g48240.1   sequence type=predicted peptide   gene model=Glyma02g48240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ADRLQKVLQCVNEVHSLCSVFGLDFGQTVGDVHRSLHGTQVEQSTNISNSTLEGLEQAILKLKIERKTIISEAKLFELWNLMDSSKEERNCFMKITSIVETSESEITERGASAEVDRLAKLKASRMKELVFKKRSELEEICRLIHIEPDPSTVAEKASALIDSVEPNTYLDWWILLSYLAKIEEQIIKAKDEVLSRKEVTDRIDKLFATCEEENWLDKYN







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