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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G38350 | AT | Annotation by Michelle Graham. TAIR10: Patched family protein | chr4:17958324-17966846 REVERSE LENGTH=1273 | SoyBase | E_val: 0 | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0008158 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hedgehog receptor activity | SoyBase | N/A | ISS |
| KOG1933 | KOG | Cholesterol transport protein (Niemann-Pick C disease protein) | JGI | ISS | |
| PTHR10796 | Panther | PATCHED-RELATED | JGI | ISS | |
| PTHR10796:SF35 | Panther | NIEMANN-PICK C1 | JGI | ISS | |
| PF02460 | PFAM | Patched family | JGI | ISS | |
| PF12349 | PFAM | Sterol-sensing domain of SREBP cleavage-activation | JGI | ISS | |
| UniRef100_B9HPX9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cholesterol transport protein n=1 Tax=Populus trichocarpa RepID=B9HPX9_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233786B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233786B related cluster n=1 Tax=unknown RepID=UPI000233786B | SoyBase | E_val: 0 | ISS |
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Glyma02g48066 not represented in the dataset |
Glyma02g48066 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g00431 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g310900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g48066.1 sequence type=CDS gene model=Glyma02g48066 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATATCATCTTCTCCGTTACTTTTCTATTACAGGTGTTCCTACTCTCTTCTTCGCCTGCTGCCTCACAACGTGAAACCTATAGGGCTAAGCATTCTGAAGAATACTGCGCAATGTATGATATTTGCGGTCAACGCAGTGATGGCAAGGCTCTCAATTGCCCATATGGTTCCCCTTCTGTCAAGCCTGATGACCTACTGTCTGCCAAAATTCAAAGTTTGTGCCCCACCATAACTGGAAATGTTTGTTGTACGGCGGATCAGTTTGACACACTAAGAGTCCAGGTTCAACAGGCAATACCAATTCTAGTGGGCTGTCCAGCATGCTTGAGGAATTTTCTGAATCTTTTTTGTGAACTTTCTTGCTCTCCTAATCAGAGTTTATTCATCAACGTGACGTCTATTTCTGAGGTTGATGGTAATACGACTGTGGATGGCATTGATTATCACTTAACTGAAACTTTTGGACAAGGTCTATATGAATCATGTAAGGATGTAAAGTTTGGGACAATGAATACAAGGGCCATAGATTTTGTTGGGGCTGGAGCTAGCAATTTTAAAGAGTGGGCTGAATTTCTTGGTCAGAAAGTTCCTCCTGGTTTTCCTGGTTCTCCGTATTCTATACTTTTTAAGACAGCCATTCTTGACTCTTCTCCTATGAAACTTATGAATGCATCTGTATATTCATGTAATGACACTTCGCTGGGCTGCTCTTGTGGTGATTGTCCTTCATCACCTGTTTGCTCGGGTTCAGAACCTTCTCCACCCAGAAAAGATCCCTGCTCCATTGGAATTGGATCTCTAAAGGTCAGATGTGTAGATTTTTCAATAGCTATCTTGTACATTGTATTGGTTTTTGTGTTGTTTGGGTGGGCATTGCTGCAAAGGACAAGAGGAAGGAGGAGACTTGGATCCAGTGCGGAACCCTTATTGGATGATATGGTTGGTGAAGGGAGTAGTTTTGCTAACCTCCCAAAGGATGGAACTCATCCTGCAGAGGTGCAATGGATAGATCCTCAAGGGCAGAATGTGGTGCAATTTTCTTTTGTTCAAGGATGCCTGTCCAGCTTTTACAGGACATATGGAAGGTGGGCCGCTAGAAAACCCACAATTGTTCTTTGTTCCTCATTGGCAATTGTTGTTTTGCTTTGTTTGGGTCTGCTTCGTTTTGAGGTGGAGACCCGGCCTGAGAAGTTATGGGTTGGTCCCGGGAGTAAGGCAGCTGAAGAGAAAGAGTTTTTTGATAGCCACCTTGCTCCATTCTACAGAATAGAACAGCTCATAATAGCGACAATCCCTGAATCTAAGCATGGCAAGCCACCAAGTATCATAACTGAAGAAAATATTGAATTGCTTTTCGAAATACAGGAAAAGGTTGATGGAATTCGTGCAAATTATTCTGGTTTTTTAGTATCTCTGAGTGACATTTGCTTGAAGCCTTTAGGCGATGACTGTGCCACTCAAAGCATTTTGCAGTATTTTCAAATGGACCCTGACAATTATGACAACTATGGAGGTGTTGAACATGCTGAGTATTGTTTTCAGCATTACACTTCCACTGAAACATGCTTTAGTGCATTTAAGGCTCCCCTTGAACCAACTACTGCCTTAGGAGGGTTTTCTGGAAACAATTATTCTGAGGCTTCTGCATTTGTTATCACGTACCCTGTCAATAATGCAATTACAAAAGTTGGGGGTGAGAATGGGAAGGCAATAGCTTGGGAAAAAGCATTCATCCAGTTAGCTAAGGACGAATTGCTGCCAATGGTGCAATCTAGCAATCTTACCTTGTCATTTTCAACTGAAAGTTCAATTGAGGAAGAACTAAAGAGAGAAAGCACTGCAGATGTCATAACAATACTCGTGAGCTATATTGTAATGTTTGCTTATATATCGGTGACCTTGGGAGATACACCACCTCATCCATCTTTTTTCTTCCTCTCGTCCAAGGTATTGCTTGGTCTTTTGGGGGTTTTGCTTGTTATGCTTTCTGTCCTTGGATCAGTTGGATTTTTCAGTGCTATTGGAGTAAAATCGACACTAATCATAATGGAGGTCATACCTTTTCTGGTTTTAGCTGTTGGTGTTGATAACATGTGTATAATCGTAGATGCTGTGAAACGGCAACCCTCAGGTTTACCAGTAGAGGAACAAATAAGCAATGCAATGGGTGAAGTTGGACCTTCGATAACACTAGCCAGCTTATCAGAGATTCTAGCATTTGCTGTAGGATCATTTGTTTCTATGCCAGCATGCCGTGTTTTCTCCATGATTGCAGCTTTGGCGGTTCTACTGGACTTCCTTCTACAGATTACTGCTTTTGTAGCTTTGGTTACATTAGACTTTATGAGGGCCAAGGATAATAGGATTGACTGCTTTCCATGTGTGAAGTTGAATCCGCCCTCTGCGGAGCAGAATGAAGGTATTAGGCTAGAAAGAGATGGATTACTGACACGATATATGAAGGAGGTTCATGCACCATTTCTTGGACTATGGGGAGTTAAAATCTTGGTCATTGCCGTATTTGCTGCATTTACCTTAGCAAGCATTGCATTATGCACAAGAATTGAAGCTGGTCTTGAGCAGCAGATTGCTCTTCCACGGGATTCCTACCTTCAGGGTTATTTCAGTAACATATCTGAGTACCTTAGAGTTGGACCACCCTTATATTTTGTTGTAAAGGATTACAACTACAGTTTGGAATCCAAACACACAAACCAGCTATGCTCCATTAGCCACTGTGATTCAAATTCTCTTTTAAATGAGATATCTAGAGCATCATTAGTGCCAACATCAAGCTACATAGCCAAACCAGCTGCCTCATGGCTTGATGATTTTCTTGTATGGATATCACCTGAAGCTTTTAGTTGCTGTCGAAAATTCACAAATGACTCTTATTGTCCACCTGATGATCAGCCACCTTGCTGTTTACCAGATGAAGGGCCATGTGGGTTGGGTGGAGTGTGCAAAGACTGTACAACATGTTTCCGCCACTCGGATTTGGTTAATGATCGTCCATCTACAGCACAGTTCAGAGAGAAGCTTCCCTGGTTTCTTGATGCACTGCCATCAGCTGATTGTGCAAAGGGTGGCCATGGAGCTTACACCAACAGTGTAGATCTGAATGGTTATGAGGGGGGTGTCATCCAAGCTTCTGAGTTCCGTACTTATCACACACCACTTAATAGACAAGGTGACTATGTTAATGCAATACGAGCTGCAAGGGACTTTTCGGCAATAATTTCTTCGTCTTTAAAGATGGATATTTTTCCGTACTCAGTGTTTTATATCTTCTTTGAACAATACCTGGATATATGGAAGTTAGCCCTGATCAACATTACCGTAGCACTAGGTGCTATTTTTGTTGTCTGTCTGATCATCACATCCAGCGTGTGGAGTTCAGCAATCTTATTACTTGTTCTGATCATGATAATTTTGGACCTCATGGGTGTAATGGCAATTTTGGGTATTCAACTCAATGCGGTGTCTGTTGTAAACCTTATTATGTCAATAGGAATTGCTGTGGAGTTCTGTGTGCATATAGTACATGCATTCATGGTAAGCTTGGGGGATAGGAGCCAACGAGCAAAGACAGCATTGTGTACCATGGGGGCTTCTGTATTCAGTGGAATCACACTTACAAAATTAGTCGGAGTCCTCGTCCTTTGCTTCTCAACATCAGAAATTTTTGTGGTGTATTACTTCCAGATGTATCTGGCCTTGGTTATCATTGGCTTCTTACACGGTCTTGTGTTTCTACCTGTGGTATTGAGCTTGTTTGGTCCTCCGTTAAGATATAGTCATTAA
>Glyma02g48066.1 sequence type=predicted peptide gene model=Glyma02g48066 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDIIFSVTFLLQVFLLSSSPAASQRETYRAKHSEEYCAMYDICGQRSDGKALNCPYGSPSVKPDDLLSAKIQSLCPTITGNVCCTADQFDTLRVQVQQAIPILVGCPACLRNFLNLFCELSCSPNQSLFINVTSISEVDGNTTVDGIDYHLTETFGQGLYESCKDVKFGTMNTRAIDFVGAGASNFKEWAEFLGQKVPPGFPGSPYSILFKTAILDSSPMKLMNASVYSCNDTSLGCSCGDCPSSPVCSGSEPSPPRKDPCSIGIGSLKVRCVDFSIAILYIVLVFVLFGWALLQRTRGRRRLGSSAEPLLDDMVGEGSSFANLPKDGTHPAEVQWIDPQGQNVVQFSFVQGCLSSFYRTYGRWAARKPTIVLCSSLAIVVLLCLGLLRFEVETRPEKLWVGPGSKAAEEKEFFDSHLAPFYRIEQLIIATIPESKHGKPPSIITEENIELLFEIQEKVDGIRANYSGFLVSLSDICLKPLGDDCATQSILQYFQMDPDNYDNYGGVEHAEYCFQHYTSTETCFSAFKAPLEPTTALGGFSGNNYSEASAFVITYPVNNAITKVGGENGKAIAWEKAFIQLAKDELLPMVQSSNLTLSFSTESSIEEELKRESTADVITILVSYIVMFAYISVTLGDTPPHPSFFFLSSKVLLGLLGVLLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCIIVDAVKRQPSGLPVEEQISNAMGEVGPSITLASLSEILAFAVGSFVSMPACRVFSMIAALAVLLDFLLQITAFVALVTLDFMRAKDNRIDCFPCVKLNPPSAEQNEGIRLERDGLLTRYMKEVHAPFLGLWGVKILVIAVFAAFTLASIALCTRIEAGLEQQIALPRDSYLQGYFSNISEYLRVGPPLYFVVKDYNYSLESKHTNQLCSISHCDSNSLLNEISRASLVPTSSYIAKPAASWLDDFLVWISPEAFSCCRKFTNDSYCPPDDQPPCCLPDEGPCGLGGVCKDCTTCFRHSDLVNDRPSTAQFREKLPWFLDALPSADCAKGGHGAYTNSVDLNGYEGGVIQASEFRTYHTPLNRQGDYVNAIRAARDFSAIISSSLKMDIFPYSVFYIFFEQYLDIWKLALINITVALGAIFVVCLIITSSVWSSAILLLVLIMIILDLMGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFMVSLGDRSQRAKTALCTMGASVFSGITLTKLVGVLVLCFSTSEIFVVYYFQMYLALVIIGFLHGLVFLPVVLSLFGPPLRYSH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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