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Report for Sequence Feature Glyma02g48030

Feature Type:gene_model
Chromosome:Gm02
Start:51416872
stop:51427204
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g48030
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G35230AT Annotation by Michelle Graham. TAIR10: BR-signaling kinase 1 | chr4:16755325-16758041 REVERSE LENGTH=512 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009742GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF885Panther JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
UniRef100_B9SID0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Receptor protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SID0_RICCO SoyBaseE_val: 0ISS
UniRef100_I1JJV5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJV5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g48030
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g48030
ParalogEvidenceComments
Glyma14g00540 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g48030 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g310400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g48030
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g48030
>Glyma02g48030.1   sequence type=CDS   gene model=Glyma02g48030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGTTGCCAATCATCGATGTTGCTGAGAGTGGGAGAGAGGGAGACTCACCCTGAAAAGGAGAAGGAAAGGGAAAAGGAAAAAGAGCAAGCGTACGGAAACCACCAGAGGCAGTCTGAGGGAGGAGAGGGCGACGGCGAGAAAGAGGTGGTTGATTTCTCGTTCTCGGAGTTCTCGCTGGCGGAGCTGAAGGCGGCCACCAACAATTTCAGCTCTGAGTATATCGTGTCAGAGAGTGGGGAGAAGGCACCCAATCTGGTGTACAAGGGTCGCCTCCAGAACCAGAGCCGTTGGATTGCTGTGAAGAAGTTCAGCAAGTCTGCTTGGCCTGATCCCAAGCAATTCGTCGAAGAGGCTTCCGGCGTTGGTAAGTTGCGCCATCCAAGGCTCGCTAATTTGATCGGTTACTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGACACTCTTGCCAAGCATCTCTTCCACTGGGAAACTCAGACTATTGAGTGGGCCATGCGGTTGCGAGTGGCTCTGTACATCGCACAGGCTTTGCACTATTGCAGTTCTGAGGGGCGTCCCTTGTACCATGACTTGAATGCTTACCGTGTTCTCTTCGACCAGGAAGGTGATCCTCGTCTCTCTTGCTTTGGTTTTATGAAGAACAGCAGGGATGGCAAGAGTTATAGCACCAATCTTGCTTACACACCTCCTGAATATTTAAGAAACGGAAGGGTCACGCCTGAAAGTGTCATTTACAGCTTTGGAACCGTTCTTCTAGACCTCCTCAGTGGCAAGCACATCCCTCCCAGTCATGCACTTGATATGATACAGGGGAAAAACAATATGCTCTTAATGGATTCACATTTAGAGGGAAAGTTTTCAACAGAAGAGGCAACAGTAGTGGTTAATCTTGCCTCTAAATGTTTGCAATATGAACCTAGGGAGCGGCCTGATACAAAGGATTTGGTCACAACACTTGCCCCATTGCATACAAAACCCGATGTTCGTTCTCACATTATGCTTGGAATTCCAAAGCACGAGGAGGTTCCATCAACCCCACAACGTCCTCTTTCAGCAATGGGTGAGGCTTGTTCAAGAATGGACCTAACTGCAATACATCAGATCTTGGTTGCGACACACTACAGAGACGATGAAGGAACTAATGAGTTGTCGTTCCAAGAGTGGACTCAACAGATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGACTATGCATTCCGTGACAAGGACTTTAAGACAGCCATTGATAACTATTCCCAGTTTATTGATGTTGGAACGATGATCTCTCCAACTGTTTTTGCAAGGCGCAGTCTGTGCTATCTGTTATGTGATCAACCAGATCCTGCACTACGAGATGCAATGCAAGCACAGTGTGTTTATCCAGACTGGCCCACGGCTTTCTACATGCAATCAGTTGCTCTTGCAAAACTGGACATGCACAAGGATGCGGCTGATATGTTAAATGAGGCAGCTGCATTGGAAGAGAAGAGGCAAAGAGGAGCAAGATGA
Predicted protein sequences of Glyma02g48030
>Glyma02g48030.1   sequence type=predicted peptide   gene model=Glyma02g48030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCCQSSMLLRVGERETHPEKEKEREKEKEQAYGNHQRQSEGGEGDGEKEVVDFSFSEFSLAELKAATNNFSSEYIVSESGEKAPNLVYKGRLQNQSRWIAVKKFSKSAWPDPKQFVEEASGVGKLRHPRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWETQTIEWAMRLRVALYIAQALHYCSSEGRPLYHDLNAYRVLFDQEGDPRLSCFGFMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDMIQGKNNMLLMDSHLEGKFSTEEATVVVNLASKCLQYEPRERPDTKDLVTTLAPLHTKPDVRSHIMLGIPKHEEVPSTPQRPLSAMGEACSRMDLTAIHQILVATHYRDDEGTNELSFQEWTQQMRDMLEARKRGDYAFRDKDFKTAIDNYSQFIDVGTMISPTVFARRSLCYLLCDQPDPALRDAMQAQCVYPDWPTAFYMQSVALAKLDMHKDAADMLNEAAALEEKRQRGAR*






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