Glyma02g48020 - SoyBase

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Report for Sequence Feature Glyma02g48020

Feature Type:	gene_model
Chromosome:	Gm02
Start:	51407505
stop:	51409648
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g48020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22250	AT	Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein \| chr3:7867806-7870053 FORWARD LENGTH=461	SoyBase	E_val: 5.00E-33	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0008194	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
UniRef100_I1JJV4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJV4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I7APL7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-glycosyltransferase 82A1-like protein n=1 Tax=Phaseolus vulgaris RepID=I7APL7_PHAVU	SoyBase	E_val: 1.00E-82	ISS

Expression Patterns of Glyma02g48020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g48020

Paralog	Evidence	Comments
Glyma14g00550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g48020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g310200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g48020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g48020

Limit To All Plant Sequences

>Glyma02g48020.1   sequence type=CDS   gene model=Glyma02g48020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAAGCTAGGCTGGGAATTTGTGAGGCAGGGGTTTGAGATAGCGAAGGAGAAGGACGATGAAATAAATCCAACACTCCTTAAAAAACAAACAAATTTTGTCTTCAGCACTTCTGCTTACGGCAACCCTTCATTTATTGCCATAACAATTCCACCGTCAATGCTCATAGCTATAGTACCCGTATCTTCTTTGGCTGTTAGACTTCCGCAACATGAGGGAAATTTTAGCCTTGAACCTGAGCTGCCGGTGATTTCAACAGAGGACCTGCCATGGCTTGTTGGAACAGATGCAGCAAGGAAAGCAAGATTTAAATTTTGGAAAAGAACTTTGGTGAGATCAAGTGCTCTGAAATGGCTCCTGGTGAATTCCTTTCCCGATGAAAGCAAACTCGAATCGGCAAACAACAAGAACAAGTTTAAAGGTTGTCCACGTGTGTTTCCGATAGGTCCTATTTGTAATTGTAGGATTGATGGTGAGCTTTTGGGAAGAAGATATGAGCTGCTTGAAGTGGCTAGCAAAGCAGAAGGCGAAGTCAGTTGGGCTTCAGGGAGGCCTTTCATTTGGGTATTGAGGTCCACTTGGCGCCAAGGCTTACCGGTTGGGTTTTTGGAAAGGGTTATGAAGCAGCAAGGCAGAGGCATGACCATGGTCGTTTCTTGGGCACCACAGAATCAGATTTTGCAGCATAACTCTGTGGCTTTGTTATATCACTCACTGCGGCTGGAATTCCATATTGGAGGCTTTACAGTTCCAAAAGAAATTGCTTTGCTACCCGGTGGCTTAAAACTCAATATTGGGCTTGAACCAAAGGATGTTGAAGAAGCACTTGTAAGGTTCATACAAGATAAGGAAATGGATACCCGGTTAAGGATATTCAATCAAAGAATCATGGGTGGCAATAATAATAAGACTGGAACTCTCATGTTGAAAACCTTCCTCCAAGATCTCAACAAGGCAAGACATAATTTTAATTTCTAA

Predicted protein sequences of Glyma02g48020

Limit To All Plant Sequences

>Glyma02g48020.1   sequence type=predicted peptide   gene model=Glyma02g48020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQKLGWEFVRQGFEIAKEKDDEINPTLLKKQTNFVFSTSAYGNPSFIAITIPPSMLIAIVPVSSLAVRLPQHEGNFSLEPELPVISTEDLPWLVGTDAARKARFKFWKRTLVRSSALKWLLVNSFPDESKLESANNKNKFKGCPRVFPIGPICNCRIDGELLGRRYELLEVASKAEGEVSWASGRPFIWVLRSTWRQGLPVGFLERVMKQQGRGMTMVVSWAPQNQILQHNSVALLYHSLRLEFHIGGFTVPKEIALLPGGLKLNIGLEPKDVEEALVRFIQDKEMDTRLRIFNQRIMGGNNNKTGTLMLKTFLQDLNKARHNFNF*

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