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Report for Sequence Feature Glyma02g47940

Feature Type:gene_model
Chromosome:Gm02
Start:51366270
stop:51369028
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g47940
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G37040AT Annotation by Michelle Graham. TAIR10: PHE ammonia lyase 1 | chr2:15557602-15560237 REVERSE LENGTH=725 SoyBaseE_val: 0ISS
GO:0006559GO-bp Annotation by Michelle Graham. GO Biological Process: L-phenylalanine catabolic process SoyBaseN/AISS
GO:0006598GO-bp Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process SoyBaseN/AISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0009058GO-bp Annotation by Michelle Graham. GO Biological Process: biosynthetic process SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009698GO-bp Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process SoyBaseN/AISS
GO:0009699GO-bp Annotation by Michelle Graham. GO Biological Process: phenylpropanoid biosynthetic process SoyBaseN/AISS
GO:0009805GO-bp Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process SoyBaseN/AISS
GO:0009819GO-bp Annotation by Michelle Graham. GO Biological Process: drought recovery SoyBaseN/AISS
GO:0009963GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0042398GO-bp Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process SoyBaseN/AISS
GO:0046244GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid catabolic process SoyBaseN/AISS
GO:0046274GO-bp Annotation by Michelle Graham. GO Biological Process: lignin catabolic process SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0016841GO-mf Annotation by Michelle Graham. GO Molecular Function: ammonia-lyase activity SoyBaseN/AISS
GO:0045548GO-mf Annotation by Michelle Graham. GO Molecular Function: phenylalanine ammonia-lyase activity SoyBaseN/AISS
KOG0222 KOG Phenylalanine and histidine ammonia-lyase JGI ISS
PTHR10362Panther IMIDAZOLONEPROPIONASE AND HISTIDINE AMMONIA-LYASE JGI ISS
PTHR10362:SF3Panther PHENYLALANINE AMMONIA-LYASE JGI ISS
PF00221PFAM Phenylalanine and histidine ammonia-lyase JGI ISS
UniRef100_P19143UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phenylalanine ammonia-lyase class 3 n=1 Tax=Phaseolus vulgaris RepID=PAL3_PHAVU SoyBaseE_val: 0ISS
UniRef100_UPI000189D367UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000189D367 related cluster n=1 Tax=unknown RepID=UPI000189D367 SoyBaseE_val: 0ISS

Proteins Associated with Glyma02g47940
LocusGene SymbolProtein Name
PAL1 phenylalanine ammonia-lyase 1

Expression Patterns of Glyma02g47940
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g47940 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g309300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g47940
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g47940
>Glyma02g47940.1   sequence type=CDS   gene model=Glyma02g47940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACCATTATTCTAGAAAATGACCCTCTTAACTGGAGCCATGCAGCAGATTCACTCAAGGGTAGCCACTTTGAAGAAGTAAAACGCATGGTGGCAGAATACCGGAAGCCACTTATCTCTCTGGGTGGCGGGGAGACACTAACTATATCACAGGTGGCTGCTGTTGCTGTTGCCAATGCCAACCATAACTTGCAGGCTAAGGTTGATCTCTCAGAGTCTGCAAGGGCAGGCGTTGACGCCAGCTGCGACTGGATCACCCAAAACATTAACAAAGGCACTCCCATTTATGGTGTTACCACCGGCTTTGGTGCTGCCTCCCACAGGCAAACTCAACAAGGCCTTGCTCTTCAGAAGGAAATGGTTAGGTTTTTAAACTGCGCAATATTTGGCTACCAGACAGAGTTATCTCACACACTGCCTAAATCAGCAACAAGAGCAGCAATGCTTGTGAGGGTTAATACCCTTCTTCAAGGCTACTCAGGAATCAGATTTGAAATCCTAGAAGCTATCACGAAACTACTGAACCACAATGTCACCCCCATCTTGCCATTACGTGGTACAGTTACTGCGTCTGGTGATCTAATTCCTCTGTCCTACATTGTTGCATTGCTAACTGGTAGGCGAAATAGTAAAGCTGTTGGACCCTCTGGAGAGTCACTTAATGCTAAGGAAGCTTTCCATTTAGCAGGTCTACATTCTGGGTTCTTTGAGTTGAAGCCCAAGGAAGGTCTTGCCCTCGTAAATGGCACGGCCGTTGGGTCTGGCGTAGCTTCTACTGTGCTTTTTGAGGCAAACATATTAGCTTTATTGTCCGAAGTTCTATCAGCAGTTTTTGCAGAAGTCATGCAAGGGAAGCCAGAATTTACACATCATCTAATACATAAGCTGAAGTATCATCCTGGTCAAATTGAAGCTGCAGCTATTATGGAACACATTCTAGATGGAAGCTCTTATGTCAAAGATGCTAAACTGCAACAGCCAGATCCATTGCAGAAGCCAAGAAAAGATCGTTATGCTCTTGTAACTTCTCCTCAGTGGCTTGGTCCACAGATTGAAATCATCCGGTATTCGACCAAATCAATTGAAAGGGAAATAAACTCAGTAAATGACAATCCCTTGATTGATGTCACAAGGAATAAGGCACTGAATGGTGGTAATTTCCAAGGAACCCCAATTGGAGTTTCAATGGATAATGCACGTTTAGCTGTTGCTTCAATTGGCAAACTCATCTTTGCCCAATTTACTGAGCTAGTCAATGATTTGTATAACAATGGGTTGCCATCAAATCTTTCTGCTGGTAGAAACCCAAGTCTGGATTACGGTTTCAAGGCATCTGAAGTTGCCATGGCTGCTTATTGTTCTGAACTTCAATATCTAGCAAATCCAGTAACGAGCCATGTGCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTTGGGCTTAATTTCTGCTTTGAAAACTGTCGAAGCCGTTGAGATATTAAAGCTCATGTCTTCGACTTATCTGGTTGCACTCTGCCAAGCTATTGACTTGAGGCATTTGGAGGAAAATTTCAAGAGTACGGTCAAGAATACTGTAAGCAGAGTTGCACAGAAAACATTAATTACAGAAGGCAAAGAAGAAATTAACCCATTTCGACTTTGTGAGAAAGATTTGCTTAAAGTGGTCGATAGAGAGTACGTATTTTCCTACATTGATGATCCCTCCAATGTTACGTACCCCTTGATGCCAAAACTAAAGCAAGTACTTTATGAGAAAGCACACATCAGTGCCATTAATGACAAGAATGTGAGCTTGTTGATTTTTGAGAAGATAGGAGCTTTTGAGGATGAATTGAAGTCTCTCTTGCCAAAGGAAGTTGAAAATGCAAGGGTAGCTTATGAGAATGGCAATCCAGCAATTCCAAACAGAATAAAGGAGTGTAGGTCATATCCACTGTACAAGTTTGTGAGGGAGGAGTTAGAGATAGGGTTGCTCACCGGAGAAAAGAATCTCTCACCCGATGAGGAATTTGAAAAAGTATATACAGCCATGTGTCAAGCAAAGATTGTTGACCCAATTCTGGAATGTCTTGGAGATTGGAAAGGGTCTCCCATCCCAATATAA
Predicted protein sequences of Glyma02g47940
>Glyma02g47940.1   sequence type=predicted peptide   gene model=Glyma02g47940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATIILENDPLNWSHAADSLKGSHFEEVKRMVAEYRKPLISLGGGETLTISQVAAVAVANANHNLQAKVDLSESARAGVDASCDWITQNINKGTPIYGVTTGFGAASHRQTQQGLALQKEMVRFLNCAIFGYQTELSHTLPKSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNVTPILPLRGTVTASGDLIPLSYIVALLTGRRNSKAVGPSGESLNAKEAFHLAGLHSGFFELKPKEGLALVNGTAVGSGVASTVLFEANILALLSEVLSAVFAEVMQGKPEFTHHLIHKLKYHPGQIEAAAIMEHILDGSSYVKDAKLQQPDPLQKPRKDRYALVTSPQWLGPQIEIIRYSTKSIEREINSVNDNPLIDVTRNKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSLDYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVEILKLMSSTYLVALCQAIDLRHLEENFKSTVKNTVSRVAQKTLITEGKEEINPFRLCEKDLLKVVDREYVFSYIDDPSNVTYPLMPKLKQVLYEKAHISAINDKNVSLLIFEKIGAFEDELKSLLPKEVENARVAYENGNPAIPNRIKECRSYPLYKFVREELEIGLLTGEKNLSPDEEFEKVYTAMCQAKIVDPILECLGDWKGSPIPI*






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