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Report for Sequence Feature Glyma02g47920

Feature Type:gene_model
Chromosome:Gm02
Start:51350137
stop:51353624
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g47920
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G57820AT Annotation by Michelle Graham. TAIR10: Zinc finger (C3HC4-type RING finger) family protein | chr1:21414342-21417902 REVERSE LENGTH=645 SoyBaseE_val: 0ISS
GO:0000280GO-bp Annotation by Michelle Graham. GO Biological Process: nuclear division SoyBaseN/AISS
GO:0000724GO-bp Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination SoyBaseN/AISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0006270GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication initiation SoyBaseN/AISS
GO:0006275GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006325GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin organization SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007000GO-bp Annotation by Michelle Graham. GO Biological Process: nucleolus organization SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0010424GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation on cytosine within a CG sequence SoyBaseN/AISS
GO:0016444GO-bp Annotation by Michelle Graham. GO Biological Process: somatic cell DNA recombination SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0016572GO-bp Annotation by Michelle Graham. GO Biological Process: histone phosphorylation SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0031508GO-bp Annotation by Michelle Graham. GO Biological Process: centromeric heterochromatin assembly SoyBaseN/AISS
GO:0032776GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation on cytosine SoyBaseN/AISS
GO:0051301GO-bp Annotation by Michelle Graham. GO Biological Process: cell division SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0090309GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0010369GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chromocenter SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003682GO-mf Annotation by Michelle Graham. GO Molecular Function: chromatin binding SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0008327GO-mf Annotation by Michelle Graham. GO Molecular Function: methyl-CpG binding SoyBaseN/AISS
GO:0010385GO-mf Annotation by Michelle Graham. GO Molecular Function: double-stranded methylated DNA binding SoyBaseN/AISS
GO:0010428GO-mf Annotation by Michelle Graham. GO Molecular Function: methyl-CpNpG binding SoyBaseN/AISS
GO:0010429GO-mf Annotation by Michelle Graham. GO Molecular Function: methyl-CpNpN binding SoyBaseN/AISS
GO:0042393GO-mf Annotation by Michelle Graham. GO Molecular Function: histone binding SoyBaseN/AISS
PTHR14140Panther NUCLEAR PROTEIN 95 JGI ISS
PTHR14140:SF1Panther NUCLEAR PROTEIN 95-RELATED JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
PF02182PFAM YDG/SRA domain JGI ISS
UniRef100_G7L7G5UniRef Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase UHRF1 n=1 Tax=Medicago truncatula RepID=G7L7G5_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002337124UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337124 related cluster n=1 Tax=unknown RepID=UPI0002337124 SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g47920
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g47920 not represented in the dataset
Glyma02g47920 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g47920
ParalogEvidenceComments
Glyma14g00670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g47920 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g309100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g47920
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma02g47920
>Glyma02g47920.2   sequence type=transcript   gene model=Glyma02g47920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATATGGATATTAGTTCCACTTCCCTATAAAAAGAAGCAGAAATTGTTGGCAGTGAGAAAAATGGCGCAGCTTCCCTGCGACTCCGATGGCGTCTGCATGCTCTGCAAACAGAAACCCAGTCCCTCCCAAACCCTCTCCTGTAGAACATGTGCTACTCCCTGGCACCTTTCGTGTCTCCCTTCGGCCCCTCTCTCCCTCTCCGACTCACATTGGGACTGCCCCGACTGTTCCGACACCTCCAACCATTACCCCGTCGCTCCCACCGCCGACCTTGTCTCCGCCGTTCATGCCATTCAGGCCGACACCTCTCTCACTGACCAGGAGAAGGCAAAGAAACGTCAAGAACTCCTCGCTGGCTCTTCCGACTCCTCAAAGGACAAAGCCAAAACCAAAGACATTTTTGACGGAAGCTTAAATTGCTCCATATGCATGCAGTTACCGGAGAGACACCTTGTGGGCACAACTTGTGTTTGAGATGTTTCGAGAAGTGGGTCGGACAGGGGAAGCGCACCTGTGCCAATTGCCGTGCTCAAATCCCGGCGAAGATGGCGAGTCAGCCGAGGATCAACTCTCAGCTGGCAATGGCCATCCGATTGGCGAAGGCGGCCAAGTCGGGAGAAGGGTCCTCGGGCCCACCCAAGGTGTACCACTTTGTCCGCAACCAGGACCGCCCCGATACCGCATTCACCACAGAGCGAGCCAAGAAGACTGGGAAAGCCAATGCTTGCAGTGGTAAGATTTTTGTGACTGTTCCTCCTGACCATTTTGGTCCCATCCCGTCTGAAAACGACCCCATCAGGAACCGCGGTGTTCTTGTTGGTGACACGTGGGAGGACAGGATGGAGTGTCGCCAGTGGGGTGCTCATTTGCCTCATGTTGCCGGCATTGCTGGACAGAGTGGCTATGGTTCCCAGTCTGTTGCCCTTTCTGGTGGTTACGAGGATGACGAGGATCACGGTGAGTGGTTCCTTTACACTGGCAGTGGTGGCAGAGATCTCAGTGGTAACAAACGAACCAACAAGCTTCAATCCTTTGACCAGAAGTTTGAAAACATGAACGAGGCCTTGAGAGTCAGCTGCAGGAAGGGTTATCCCGTTCGGGTTGTAAGGTCGCACAAGGAAAAGCGTTCTTCTTATGCACCGGAGTCTGGAGTGCGTTACGATGGAGTTTATAGAATAGAGAAATGCTGGCGCAAAAATGGAACACAAGGTTGCAAGGTTTGTAGGTATTTGTTTGTGAGATGTGACAATGAGCCAGCACCCTGGACAAGTGATGAAATTGGAGATCGCCCACGCCCACTGCCTAAAATTGATGAGTTGAAGGGTGCGGTTGATATAACTGAAAGGAAGGGTGATCCATCGTGGGATTTTGATGAGGAAAAGGGGTCCTGGTTGTGGAAGAAGCCTCCACCAGAAAGCAAGAAATCAGTGGACATTAAAGCTGAAGATGGAACAACAATCAGAGTTAAACGGAAAGCAAAAAATGTGTCCGTGAAAGAAAGGCTATTGAAAGAGTTTGGTTGCCAAATATGTCGCAAGGCGATGGCTTCCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGTTTGGAGGGTGCCTTTTCTGGCCAAAGTTTCATCAGAAATAGGGCATGTGGAGGTGGACGCACTTTACGAGCGCAGAAGAATTTTATGAAATGCCCATCATGTTCAACTGACATTGCTGACTTTCTCCAGAATCCACAGGTTAATAGAGAAATGCTGGCTGTTATAGAATCACTACAACGCCAGGCTGAAGATGAAAATTCTGAAGAGTCAAGTGATAAAAATGATGAAAATCTGCATGACCCAACTGAGGTTTCTAAACCTTGTGATTCTAGTGATAAGGTCCTGGAGGAAATTAAGGACAATGAGCTGAATCAGCCACACAAGCGAAGGAAAGAGTGAAGGCCGGGTTATTTTGGTCCTTTGGATTATGGGTTTTCATTAAACAGCAAGGGACGGACTGCTGATGCAATTTTTAAGTGCTATAGATTGCTAGATATTGACTTATATATGGTCTTTTGATATATTTTTTCCTTGTCTTGGTGTGTTATGATCGGAGTAGAGGTTCATGTGATAGAAAATTTAAACTGTAATGCATATCTTAATGCATTATGTGTTTTTATTGAAGATGTTATGTTAACTACTAATAGTATTAAACAAGTTTGAATTTTTAATGTTGACTTCCGTTGTAAAGTTATTTAAATTATGATATAATATAAAGATAGGATTAAAAAACTTCATACTACAATGCATTGTAGGTACACACATTAGACTAATAGTATGCACGGGGTAGATTATGA
Coding sequences of Glyma02g47920
>Glyma02g47920.1   sequence type=CDS   gene model=Glyma02g47920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATGGATATTAGTTCCACTTCCCTATAAAAAGAAGCAGAAATTGTTGGCAGTGAGAAAAATGGCGCAGCTTCCCTGCGACTCCGATGGCGTCTGCATGCTCTGCAAACAGAAACCCAGTCCCTCCCAAACCCTCTCCTGTAGAACATGTGCTACTCCCTGGCACCTTTCGTGTCTCCCTTCGGCCCCTCTCTCCCTCTCCGACTCACATTGGGACTGCCCCGACTGTTCCGACACCTCCAACCATTACCCCGTCGCTCCCACCGCCGACCTTGTCTCCGCCGTTCATGCCATTCAGGCCGACACCTCTCTCACTGACCAGGAGAAGGCAAAGAAACGTCAAGAACTCCTCGCTGGCTCTTCCGACTCCTCAAAGGACAAAGCCAAAACCAAAGACATTTTTGACGGAAGCTTAAATTGCTCCATATGCATGCAGTTACCGGAGAGGCCCGTCACGACACCTTGTGGGCACAACTTGTGTTTGAGATGTTTCGAGAAGTGGGTCGGACAGGGGAAGCGCACCTGTGCCAATTGCCGTGCTCAAATCCCGGCGAAGATGGCGAGTCAGCCGAGGATCAACTCTCAGCTGGCAATGGCCATCCGATTGGCGAAGGCGGCCAAGTCGGGAGAAGGGTCCTCGGGCCCACCCAAGGTGTACCACTTTGTCCGCAACCAGGACCGCCCCGATACCGCATTCACCACAGAGCGAGCCAAGAAGACTGGGAAAGCCAATGCTTGCAGTGGTAAGATTTTTGTGACTGTTCCTCCTGACCATTTTGGTCCCATCCCGTCTGAAAACGACCCCATCAGGAACCGCGGTGTTCTTGTTGGTGACACGTGGGAGGACAGGATGGAGTGTCGCCAGTGGGGTGCTCATTTGCCTCATGTTGCCGGCATTGCTGGACAGAGTGGCTATGGTTCCCAGTCTGTTGCCCTTTCTGGTGGTTACGAGGATGACGAGGATCACGGTGAGTGGTTCCTTTACACTGGCAGTGGTGGCAGAGATCTCAGTGGTAACAAACGAACCAACAAGCTTCAATCCTTTGACCAGAAGTTTGAAAACATGAACGAGGCCTTGAGAGTCAGCTGCAGGAAGGGTTATCCCGTTCGGGTTGTAAGGTCGCACAAGGAAAAGCGTTCTTCTTATGCACCGGAGTCTGGAGTGCGTTACGATGGAGTTTATAGAATAGAGAAATGCTGGCGCAAAAATGGAACACAAGGTTGCAAGGTTTGTAGGTATTTGTTTGTGAGATGTGACAATGAGCCAGCACCCTGGACAAGTGATGAAATTGGAGATCGCCCACGCCCACTGCCTAAAATTGATGAGTTGAAGGGTGCGGTTGATATAACTGAAAGGAAGGGTGATCCATCGTGGGATTTTGATGAGGAAAAGGGGTCCTGGTTGTGGAAGAAGCCTCCACCAGAAAGCAAGAAATCAGTGGACATTAAAGCTGAAGATGGAACAACAATCAGAGTTAAACGGAAAGCAAAAAATGTGTCCGTGAAAGAAAGGCTATTGAAAGAGTTTGGTTGCCAAATATGTCGCAAGGCGATGGCTTCCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGTTTGGAGGGTGCCTTTTCTGGCCAAAGTTTCATCAGAAATAGGGCATGTGGAGGTGGACGCACTTTACGAGCGCAGAAGAATTTTATGAAATGCCCATCATGTTCAACTGACATTGCTGACTTTCTCCAGAATCCACAGGTTAATAGAGAAATGCTGGCTGTTATAGAATCACTACAACGCCAGGCTGAAGATGAAAATTCTGAAGAGTCAAGTGATAAAAATGATGAAAATCTGCATGACCCAACTGAGGTTTCTAAACCTTGTGATTCTAGTGATAAGGTCCTGGAGGAAATTAAGGACAATGAGCTGAATCAGCCACACAAGCGAAGGAAAGAGTGA

>Glyma02g47920.2   sequence type=CDS   gene model=Glyma02g47920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATGCAGTTACCGGAGAGACACCTTGTGGGCACAACTTGTGTTTGAGATGTTTCGAGAAGTGGGTCGGACAGGGGAAGCGCACCTGTGCCAATTGCCGTGCTCAAATCCCGGCGAAGATGGCGAGTCAGCCGAGGATCAACTCTCAGCTGGCAATGGCCATCCGATTGGCGAAGGCGGCCAAGTCGGGAGAAGGGTCCTCGGGCCCACCCAAGGTGTACCACTTTGTCCGCAACCAGGACCGCCCCGATACCGCATTCACCACAGAGCGAGCCAAGAAGACTGGGAAAGCCAATGCTTGCAGTGGTAAGATTTTTGTGACTGTTCCTCCTGACCATTTTGGTCCCATCCCGTCTGAAAACGACCCCATCAGGAACCGCGGTGTTCTTGTTGGTGACACGTGGGAGGACAGGATGGAGTGTCGCCAGTGGGGTGCTCATTTGCCTCATGTTGCCGGCATTGCTGGACAGAGTGGCTATGGTTCCCAGTCTGTTGCCCTTTCTGGTGGTTACGAGGATGACGAGGATCACGGTGAGTGGTTCCTTTACACTGGCAGTGGTGGCAGAGATCTCAGTGGTAACAAACGAACCAACAAGCTTCAATCCTTTGACCAGAAGTTTGAAAACATGAACGAGGCCTTGAGAGTCAGCTGCAGGAAGGGTTATCCCGTTCGGGTTGTAAGGTCGCACAAGGAAAAGCGTTCTTCTTATGCACCGGAGTCTGGAGTGCGTTACGATGGAGTTTATAGAATAGAGAAATGCTGGCGCAAAAATGGAACACAAGGTTGCAAGGTTTGTAGGTATTTGTTTGTGAGATGTGACAATGAGCCAGCACCCTGGACAAGTGATGAAATTGGAGATCGCCCACGCCCACTGCCTAAAATTGATGAGTTGAAGGGTGCGGTTGATATAACTGAAAGGAAGGGTGATCCATCGTGGGATTTTGATGAGGAAAAGGGGTCCTGGTTGTGGAAGAAGCCTCCACCAGAAAGCAAGAAATCAGTGGACATTAAAGCTGAAGATGGAACAACAATCAGAGTTAAACGGAAAGCAAAAAATGTGTCCGTGAAAGAAAGGCTATTGAAAGAGTTTGGTTGCCAAATATGTCGCAAGGCGATGGCTTCCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGTTTGGAGGGTGCCTTTTCTGGCCAAAGTTTCATCAGAAATAGGGCATGTGGAGGTGGACGCACTTTACGAGCGCAGAAGAATTTTATGAAATGCCCATCATGTTCAACTGACATTGCTGACTTTCTCCAGAATCCACAGGTTAATAGAGAAATGCTGGCTGTTATAGAATCACTACAACGCCAGGCTGAAGATGAAAATTCTGAAGAGTCAAGTGATAAAAATGATGAAAATCTGCATGACCCAACTGAGGTTTCTAAACCTTGTGATTCTAGTGATAAGGTCCTGGAGGAAATTAAGGACAATGAGCTGAATCAGCCACACAAGCGAAGGAAAGAGTGA
Predicted protein sequences of Glyma02g47920
>Glyma02g47920.1   sequence type=predicted peptide   gene model=Glyma02g47920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IWILVPLPYKKKQKLLAVRKMAQLPCDSDGVCMLCKQKPSPSQTLSCRTCATPWHLSCLPSAPLSLSDSHWDCPDCSDTSNHYPVAPTADLVSAVHAIQADTSLTDQEKAKKRQELLAGSSDSSKDKAKTKDIFDGSLNCSICMQLPERPVTTPCGHNLCLRCFEKWVGQGKRTCANCRAQIPAKMASQPRINSQLAMAIRLAKAAKSGEGSSGPPKVYHFVRNQDRPDTAFTTERAKKTGKANACSGKIFVTVPPDHFGPIPSENDPIRNRGVLVGDTWEDRMECRQWGAHLPHVAGIAGQSGYGSQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKLQSFDQKFENMNEALRVSCRKGYPVRVVRSHKEKRSSYAPESGVRYDGVYRIEKCWRKNGTQGCKVCRYLFVRCDNEPAPWTSDEIGDRPRPLPKIDELKGAVDITERKGDPSWDFDEEKGSWLWKKPPPESKKSVDIKAEDGTTIRVKRKAKNVSVKERLLKEFGCQICRKAMASPLTTPCAHNFCKACLEGAFSGQSFIRNRACGGGRTLRAQKNFMKCPSCSTDIADFLQNPQVNREMLAVIESLQRQAEDENSEESSDKNDENLHDPTEVSKPCDSSDKVLEEIKDNELNQPHKRRKE*

>Glyma02g47920.2   sequence type=predicted peptide   gene model=Glyma02g47920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHAVTGETPCGHNLCLRCFEKWVGQGKRTCANCRAQIPAKMASQPRINSQLAMAIRLAKAAKSGEGSSGPPKVYHFVRNQDRPDTAFTTERAKKTGKANACSGKIFVTVPPDHFGPIPSENDPIRNRGVLVGDTWEDRMECRQWGAHLPHVAGIAGQSGYGSQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKLQSFDQKFENMNEALRVSCRKGYPVRVVRSHKEKRSSYAPESGVRYDGVYRIEKCWRKNGTQGCKVCRYLFVRCDNEPAPWTSDEIGDRPRPLPKIDELKGAVDITERKGDPSWDFDEEKGSWLWKKPPPESKKSVDIKAEDGTTIRVKRKAKNVSVKERLLKEFGCQICRKAMASPLTTPCAHNFCKACLEGAFSGQSFIRNRACGGGRTLRAQKNFMKCPSCSTDIADFLQNPQVNREMLAVIESLQRQAEDENSEESSDKNDENLHDPTEVSKPCDSSDKVLEEIKDNELNQPHKRRKE*






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