Glyma02g47860 - SoyBase

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Report for Sequence Feature Glyma02g47860

Feature Type:	gene_model
Chromosome:	Gm02
Start:	51303558
stop:	51307540
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g47860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48230	AT	Annotation by Michelle Graham. TAIR10: acetoacetyl-CoA thiolase 2 \| chr5:19552570-19555122 REVERSE LENGTH=403	SoyBase	E_val: 0	ISS
GO:0006084	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process	SoyBase	N/A	ISS
GO:0006085	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009846	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen germination	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0016125	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol metabolic process	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0019745	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003985	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acetyl-CoA C-acetyltransferase activity	SoyBase	N/A	ISS
KOG1390	KOG	Acetyl-CoA acetyltransferase	JGI		ISS
PTHR18919	Panther	ACETYL-COA C-ACYLTRANSFERASE	JGI		ISS
PTHR18919:SF7	Panther	ACETYL-COA C-ACETYLTRANSFERASE	JGI		ISS
PF00108	PFAM	Thiolase, N-terminal domain	JGI		ISS
PF02803	PFAM	Thiolase, C-terminal domain	JGI		ISS
UniRef100_G7K0L3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acetyl-CoA acetyltransferase, cytosolic n=2 Tax=Medicago truncatula RepID=G7K0L3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JJT8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJT8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g47860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g47860 not represented in the dataset	Glyma02g47860 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g47860

Paralog	Evidence	Comments
Glyma14g00760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g47860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g308500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g47860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g47860

Limit To All Plant Sequences

>Glyma02g47860.2   sequence type=transcript   gene model=Glyma02g47860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTGTAACTTGTTTATTGAATCATATTCATGAATCATGGTCGAGCAGAAAAACTTGGGAAAAAGAAGAGTAATTGGCAAATTGATTTTGGCTTGCTCGGCAACACGGTGGGAGCATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTCATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAGATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTACCCTGTCATCTCTATCTGCCACCAAGCTAGGCTCTATAGCTATTGAAGCTGCTCTTAAAAGGGCCAATGTTGATCCATCCCTTGTGGAAGAAGTATTTTTCGGGAATGTTCTTAGTGCTAATTTGGGGCAAGCTCCTGCAAGACAAGCTGCTCTTGGAGCAGGAATATCCAATTCAGTAATCTGTACTACTGTTAACAAAGTTTGTGCATCAGGAATGAAAGCTGCAATGCTTGCTGCACAGAGTATTCAATTAAGCATAAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGTACCCAAGTACCTGGCTGAAGCAAGGAAAGGATCACGCCTTGGACATGATTCACTTGTTGATGGGATGTTGAAAGATGGTTTGTGGGATGTCTATAAGGATGTTGGCATGGGAGTCTGTGCTGAGCTATGTGCAGATAACCATGCATTAACAAGAGATGACCAGGATAACTATGCAGTTCAGAGTTTTGAACGCGGAATTGCTGCCCAAGAAAGTGGTGCTTTTTCATGGGAAATTGCTCCAGTTGAAGTCTCTGGTGGAAGGGGAAGACCATCAACAGTTGTTGATAAGGACGAAGGCCTAGGAAAGTTTGATGCTGCCAAGTTACGCAAACTTCGGCCAAGTTTCAAGGAGACTGGAGGTTCTGTTACTGCTGGCAATGCTTCCAGCATAAGTGATGGTGCCGCTGCACTAGTTTTGGTGAGTGGAGAGAAGGCACTGAAGCTTGGGCTTCAAGTTATTGCAAAAATCACTGGATATGCTGATGCTGCTCAGGAACCAGAGTTATTTACAACAGCTCCATCCCTTGCCATTCCCAAAGCTATTGCCAAGGCAGGGTTGGAGACTTCGCAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGGTAGGATTTCATGTCATTTTTAATTGTAGTCATTTTTCAACTCATGATGCCGTGAATTTTAATTCTTCTTATTGCTGTCTGTAGGTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCGGAAAAAGTAAACTTACACGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAACGGTGGAGGTGGTGCATCTGCCCTTGTTGTTGAGCTTCTGTAAAACCTATTTTATGTTCCGTAGATGTCCTTTTAAGAACCAGCGTTTGGTGCAAAGCTCAAAAGATCTTGCCTCCCTCTTTAGCAAGCGAACATGCAAGTTTCAAATTTATTACAAGGACAAGACGGAAAGAGAGGAGAGAAATTTAGCTACATAATTGTTAGGTTTAAGTCTCATCTTGTGAAAGTGAAATTTTCTTAGCATCAAAGTAGAACATGAAGCAATATTATCCTAATTTTGGTTTGGAATGAATCATTATAAAACCTCTTATTCCAAGCACACAAGATTACAGATTCCCTTGCTTTGCAAAAATGTGTTCCAGAACTGAAATTGCCAAAAAGAAAGAGTGGAAATGTGGGAGTTGTAGTTGGTCTTGCGTCTGCTAATTTATTATTACTGTGGTATACGTACAATTCAATTATACATGCAAAAAATATTGCAGGGTAGTTGTACTTACATAAATCAATCAGTATTTAGACTGATGTTTTTTAATCCCTCAAACGTAAAGATGACCC

Coding sequences of Glyma02g47860

Limit To All Plant Sequences

>Glyma02g47860.1   sequence type=CDS   gene model=Glyma02g47860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAGATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTACCCTGTCATCTCTATCTGCCACCAAGCTAGGCTCTATAGCTATTGAAGCTGCTCTTAAAAGGGCCAATGTTGATCCATCCCTTGTGGAAGAAGTATTTTTCGGGAATGTTCTTAGTGCTAATTTGGGGCAAGCTCCTGCAAGACAAGCTGCTCTTGGAGCAGGAATATCCAATTCAGTAATCTGTACTACTGTTAACAAAGTTTGTGCATCAGGAATGAAAGCTGCAATGCTTGCTGCACAGAGTATTCAATTAAGCATAAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGTACCCAAGTACCTGGCTGAAGCAAGGAAAGGATCACGCCTTGGACATGATTCACTTGTTGATGGGATGTTGAAAGATGGTTTGTGGGATGTCTATAAGGATGTTGGCATGGGAGTCTGTGCTGAGCTATGTGCAGATAACCATGCATTAACAAGAGATGACCAGGATAACTATGCAGTTCAGAGTTTTGAACGCGGAATTGCTGCCCAAGAAAGTGGTGCTTTTTCATGGGAAATTGCTCCAGTTGAAGTCTCTGGTGGAAGGGGAAGACCATCAACAGTTGTTGATAAGGACGAAGGCCTAGGAAAGTTTGATGCTGCCAAGTTACGCAAACTTCGGCCAAGTTTCAAGGAGACTGGAGGTTCTGTTACTGCTGGCAATGCTTCCAGCATAAGTGATGGTGCCGCTGCACTAGTTTTGGTGAGTGGAGAGAAGGCACTGAAGCTTGGGCTTCAAGTTATTGCAAAAATCACTGGATATGCTGATGCTGCTCAGGAACCAGAGTTATTTACAACAGCTCCATCCCTTGCCATTCCCAAAGCTATTGCCAAGGCAGGGTTGGAGACTTCGCAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGGTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCGGAAAAAGTAAACTTACACGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAACGGTGGAGGTGGTGCATCTGCCCTTGTTGTTGAGCTTCTGTAA

>Glyma02g47860.2   sequence type=CDS   gene model=Glyma02g47860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAGATGTTTGCATTGTTGGTGTTGCACGTACACCAATGGGTGGATTTCTTGGTACCCTGTCATCTCTATCTGCCACCAAGCTAGGCTCTATAGCTATTGAAGCTGCTCTTAAAAGGGCCAATGTTGATCCATCCCTTGTGGAAGAAGTATTTTTCGGGAATGTTCTTAGTGCTAATTTGGGGCAAGCTCCTGCAAGACAAGCTGCTCTTGGAGCAGGAATATCCAATTCAGTAATCTGTACTACTGTTAACAAAGTTTGTGCATCAGGAATGAAAGCTGCAATGCTTGCTGCACAGAGTATTCAATTAAGCATAAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGTACCCAAGTACCTGGCTGAAGCAAGGAAAGGATCACGCCTTGGACATGATTCACTTGTTGATGGGATGTTGAAAGATGGTTTGTGGGATGTCTATAAGGATGTTGGCATGGGAGTCTGTGCTGAGCTATGTGCAGATAACCATGCATTAACAAGAGATGACCAGGATAACTATGCAGTTCAGAGTTTTGAACGCGGAATTGCTGCCCAAGAAAGTGGTGCTTTTTCATGGGAAATTGCTCCAGTTGAAGTCTCTGGTGGAAGGGGAAGACCATCAACAGTTGTTGATAAGGACGAAGGCCTAGGAAAGTTTGATGCTGCCAAGTTACGCAAACTTCGGCCAAGTTTCAAGGAGACTGGAGGTTCTGTTACTGCTGGCAATGCTTCCAGCATAAGTGATGGTGCCGCTGCACTAGTTTTGGTGAGTGGAGAGAAGGCACTGAAGCTTGGGCTTCAAGTTATTGCAAAAATCACTGGATATGCTGATGCTGCTCAGGAACCAGAGTTATTTACAACAGCTCCATCCCTTGCCATTCCCAAAGCTATTGCCAAGGCAGGGTTGGAGACTTCGCAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGGTAGGATTTCATGTCATTTTTAATTGTAGTCATTTTTCAACTCATGATGCCGTGAATTTTAATTCTTCTTATTGCTGTCTGTAG

Predicted protein sequences of Glyma02g47860

Limit To All Plant Sequences

>Glyma02g47860.1   sequence type=predicted peptide   gene model=Glyma02g47860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPVAAASSDSIKPRDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVEEVFFGNVLSANLGQAPARQAALGAGISNSVICTTVNKVCASGMKAAMLAAQSIQLSINDVVVAGGMESMSNVPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYKDVGMGVCAELCADNHALTRDDQDNYAVQSFERGIAAQESGAFSWEIAPVEVSGGRGRPSTVVDKDEGLGKFDAAKLRKLRPSFKETGGSVTAGNASSISDGAAALVLVSGEKALKLGLQVIAKITGYADAAQEPELFTTAPSLAIPKAIAKAGLETSQIDFYEINEAFAVVALANQKLLGLNSEKVNLHGGAVALGHPLGCSGARILVTLLGVLKQKNGKYGVGGICNGGGGASALVVELL*

>Glyma02g47860.2   sequence type=predicted peptide   gene model=Glyma02g47860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPVAAASSDSIKPRDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVEEVFFGNVLSANLGQAPARQAALGAGISNSVICTTVNKVCASGMKAAMLAAQSIQLSINDVVVAGGMESMSNVPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYKDVGMGVCAELCADNHALTRDDQDNYAVQSFERGIAAQESGAFSWEIAPVEVSGGRGRPSTVVDKDEGLGKFDAAKLRKLRPSFKETGGSVTAGNASSISDGAAALVLVSGEKALKLGLQVIAKITGYADAAQEPELFTTAPSLAIPKAIAKAGLETSQIDFYEINEAFAVGFHVIFNCSHFSTHDAVNFNSSYCCL*

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