Glyma02g47650 - SoyBase

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Report for Sequence Feature Glyma02g47650

Feature Type:	gene_model
Chromosome:	Gm02
Start:	51172225
stop:	51175238
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g47650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G04880	AT	Annotation by Michelle Graham. TAIR10: zinc-dependent activator protein-1 \| chr2:1718557-1720219 FORWARD LENGTH=463	SoyBase	E_val: 3.00E-80	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G7KEQ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=1 Tax=Medicago truncatula RepID=G7KEQ1_MEDTR	SoyBase	E_val: 2.00E-114	ISS
UniRef100_I1JJR0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJR0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g47650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g47650

Paralog	Evidence	Comments
Glyma14g01010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g47650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g306300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g47650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g47650

Limit To All Plant Sequences

>Glyma02g47650.1   sequence type=CDS   gene model=Glyma02g47650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCTTCAGACAAAAGTGCGGATCAAAATATCCCTTCTGATAAATTGCAGCAGAGAGTGAGTCTTGATAGTGATACTACATTGTCACAAGGTCATGATACTAAAAATGATCTGTCCAAACCAGAGGAAGCAAGTATTCTTTCTATTGTAGTTAAAAATGAAGAAGGGAAGGATTCTGATGCTATTGCTTGTGCCTTGGAATCAGATCAAGAAGGAAGCACATGCTCTTTACCACTTGAGAAACCTTTGCAGAACCCTGATACTCTTTCGCATGAGTTGCCTCGATTGCAGTCCAGTCAGGAATTTCCCTCTATAATACGCGAAAAGGTATCAAAAGATGGCTATAACTGGCGAAAATATGGTCAGAAACATGTTAAGGGGAATGAATTTATAAGGAGCTATTACAAGTGCACACATCCAAACTGCCTGGCAAAAAAGCAATTGCAGCAGTCAAATAATGGGCATATCACAGATTCCATTTGTATCGGTCAGCATAATCATCCTAGACCTCAATTGAACTCCACAGTATCAGTTGAGTGTGTTCTGCCTGTTGTTGAACAAGCACCACACAAATCCTCTTTAGCCACTGTGGAAGACAAAGCATCCGTTGAGCATGGATGTATGCCTCAACAGATCCAGCCTTTACAATCCTTTCCGCCTGCAAAAGTTTCCCCAGTTAATAAGTTGAATGCTTCACATTTATCATTGACTAAGGCAAAGAACCAGGTTCATGACAACGAGGAACCCGAGTCAAAGCGGCTGAAGAAAGACAATACTAATCCTGATGTCACTAGAGTTGACATGTCAACTCGTGAATCTCGTGTTGTTGTTCAAACTTCAAGTGAGGTTGATTTGGTAAATGATGGGTATCGCTGGAGGAAATATGGGCAGAAGCTAGTTAAAGGGAATACAAACCCAAGAAGTTATTATCGATGCTCGAATCCTGGATGCCCTGTCAAAAAGCATGTGGAAAGGGCCTCTCATGATTCAAAAGTTGTAATAACTACCTATGAGGGACAGCATGATCATGAAATCCCCCCTGGAAGGACCGTCACTCAGAATGCAGCTACAAATGCTCGCACAACGGCCAGTAATGGCAAGGCTGGAACCAAATCTGAGGGTAATATTACTGATGATACAGGGGAACGAAGCGGCTTGGGCTCAGCAAGCAGATTAACAGAGCAACTAAATGGCGAGTCAATTACTAAGTCAAAGGCTGGTGATATGGTTGAGTTTTGTGTGATCAGCCTTTCTAATGAGGGTCCTGAAATTAAATTAAGTGAGCAACAACAACAAAAAGATAATTCAGCTACTAAAGACGATTCTGTCAGCAATGATGTTATAAGCCATTCAAGTTCTGGAGTTCTGTGTAGATCAAATGAACAGCTGAAAGGTGAGGTAAAACCTATATCAGAAGGAAGTAAGGATTGCCTTAATGTGGTTGCCGTGCATGATACTCGTAGTACAGAAAGTGAATTTAACAAGCAATCAACAGCTGATGCAGAACCCGTCCAAAGCTAA

Predicted protein sequences of Glyma02g47650

Limit To All Plant Sequences

>Glyma02g47650.1   sequence type=predicted peptide   gene model=Glyma02g47650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSSDKSADQNIPSDKLQQRVSLDSDTTLSQGHDTKNDLSKPEEASILSIVVKNEEGKDSDAIACALESDQEGSTCSLPLEKPLQNPDTLSHELPRLQSSQEFPSIIREKVSKDGYNWRKYGQKHVKGNEFIRSYYKCTHPNCLAKKQLQQSNNGHITDSICIGQHNHPRPQLNSTVSVECVLPVVEQAPHKSSLATVEDKASVEHGCMPQQIQPLQSFPPAKVSPVNKLNASHLSLTKAKNQVHDNEEPESKRLKKDNTNPDVTRVDMSTRESRVVVQTSSEVDLVNDGYRWRKYGQKLVKGNTNPRSYYRCSNPGCPVKKHVERASHDSKVVITTYEGQHDHEIPPGRTVTQNAATNARTTASNGKAGTKSEGNITDDTGERSGLGSASRLTEQLNGESITKSKAGDMVEFCVISLSNEGPEIKLSEQQQQKDNSATKDDSVSNDVISHSSSGVLCRSNEQLKGEVKPISEGSKDCLNVVAVHDTRSTESEFNKQSTADAEPVQS*

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