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Report for Sequence Feature Glyma02g47620

Feature Type:gene_model
Chromosome:Gm02
Start:51146926
stop:51149284
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g47620
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G35740AT Annotation by Michelle Graham. TAIR10: Carbohydrate-binding X8 domain superfamily protein | chr5:13910572-13911095 REVERSE LENGTH=119 SoyBaseE_val: 4.00E-52ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR16631Panther GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED JGI ISS
PTHR16631:SF1Panther GLUCAN 1,3-BETA-GLUCOSIDASE JGI ISS
PF07983PFAM X8 domain JGI ISS
UniRef100_G7KEP5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glucan endo-1,3-beta-glucosidase n=1 Tax=Medicago truncatula RepID=G7KEP5_MEDTR SoyBaseE_val: 5.00E-57ISS
UniRef100_I1JJQ7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJQ7_SOYBN SoyBaseE_val: 3.00E-83ISS

Expression Patterns of Glyma02g47620
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g47620 not represented in the dataset
Glyma02g47620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g47620
ParalogEvidenceComments
Glyma14g01030 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g47620 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g306000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g47620
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g47620
>Glyma02g47620.1   sequence type=CDS   gene model=Glyma02g47620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACATTCATGCTGAAGTTGGTGCTTCCTCTACTTTTCCTGTCCATGATTCCTCCAAAAACAGCGTATGCGGAGTTTGAGCAATGGTGTGTAGCAGATGAGCAGACCACGGATTCTGAGTTGCAGGCAGCCTTGGATTGGGCTTGTGGGAAAGGGGGTGCAGATTGTAGCAAAATCCAAGTAAACCAACCATGCTATTTACCAAACACATTGAAAGGCCATGCTTCTTATGCCTTCAACAGCTACTATCAGAAGTTCAAGCACAGTGGAGGTTCTTGCTACTTCAGAGGTGCTTCCATAACAACAGAAGTGGATCCTAGTTATGGTTCTTGCCACTATGACTTCATTCCCTGA
Predicted protein sequences of Glyma02g47620
>Glyma02g47620.1   sequence type=predicted peptide   gene model=Glyma02g47620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATFMLKLVLPLLFLSMIPPKTAYAEFEQWCVADEQTTDSELQAALDWACGKGGADCSKIQVNQPCYLPNTLKGHASYAFNSYYQKFKHSGGSCYFRGASITTEVDPSYGSCHYDFIP*






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