Glyma02g47530 - SoyBase

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Report for Sequence Feature Glyma02g47530

Feature Type:	gene_model
Chromosome:	Gm02
Start:	51088113
stop:	51095385
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g47530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G05120	AT	Annotation by Michelle Graham. TAIR10: Nucleoporin, Nup133/Nup155-like \| chr2:1842069-1846858 REVERSE LENGTH=1285	SoyBase	E_val: 0	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR13405	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13405:SF4	Panther	gb def: Hypothetical protein At2g05120	JGI		ISS
PF03177	PFAM	Non-repetitive/WGA-negative nucleoporin C-terminal	JGI		ISS
PF08801	PFAM	Nup133 N terminal like	JGI		ISS
UniRef100_Q2UY13	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleoporin n=1 Tax=Lotus japonicus RepID=Q2UY13_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_UPI000233767B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233767B related cluster n=1 Tax=unknown RepID=UPI000233767B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g47530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g47530

Paralog	Evidence	Comments
Glyma14g01160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g47530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g305200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g47530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g47530

Limit To All Plant Sequences

>Glyma02g47530.1   sequence type=CDS   gene model=Glyma02g47530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTCTTGCGGAACGAAGAAGAGCAATGTTCGCTCTCGCAGAGAGCAAGGTCGCGATTCCACGGTGGTAGATTCTCCGGTCACTCCTGCTCGAACCTCTTTCCACGATAACGCCGTTCCCAATCGCCCGACCACCGGCACTCCCGTTCCTTGGGCTCCCCGCTTATCCGTTCTTGCCAGGGTTCCTCAGGTCAACAGAACTGGAAAAGGCGACGACACAGATCCTACCAAACCTGTTTTCGTCGGCGAGTTTCCGCAAGTGGTTCGTGATGAGCAGAGCATTTTGCTACACAATCGAATTCCTGCTGAAGATCGCGTGTGTGGTGGAATTGACAAGAGCACATCCCTTGCTTGGATTATTTGTGGGAACAGGGTCTACCTATGGTGTTATTTGTCGCCCGCATCCTCCGTGAAATGTGCTGTCCTCGAGATTCCTTTGAATGATGCTGATGTTGGCAGAAATCATGCTGGTAGTTGGTTGCTTTGTGTTGTTAATTGTGATGCCACGTCTGTGGGAACGAATAAAGTTGCAAAACAGTGCAACTCTGCTGCTGTGGTTTTGTGCAATTGTCGGACTCGGGCTGTTATATACTGGCCGGACATCTATTCTCAGTTGCATGCTCCGGTCACTAGTCTTGTGTCTTCTGACGAGCTGGAGGCTGTTTTGACTCCTGATAGGAAAGCGTCCTTCAACAGGCAGCGGCGACAAAGTAAGCTGGGAAGTAGTTTGAGTGGATTGCACACATTTAACTCTATGATTGCTTCTGCTGATCCCAGTTGTAAGTTTGTATGTGTTGCCCTTGCGTGCAGCTCGAGTGATGAACTTTGGCAGTTTAAATGCACTCCTACTGGCATTCATCGAAGGAAAGTATATGAAAATATTATGCATTTCCCACTCCAACAGGGTGAATCAGGTCAAATTGTGAGCAATATTGGGTACCCTAGATCTCTGATGTGGCATTTTCCTCATTATTCTATCCAGGAATCAAGTCGGCAATTCTTGGTATTGACAGACCATGAGATACAGTGTTTCAGAGTAGAGTTTGGTTCTGATATACCTATTTCAAAGCTTTGGTCTCAGGCAATTGTTGGAACAGATGCTGAGGTCGGCATTAAGAAGGATCTGGCTGGTCAAAAGAGAATCTGGCCTCTTGATATGCAAGTAGATGATCATGGTAAAGTCATTACCATTCTTGTTGCAACCTTTTGCAATGACCGGATTAGCAGTTCAAGCTACATGCAGTATTCTCTCCTGATCATGCAATATAAATCAGGGATGGGTTTAGAGACTACAAATGACAGGGTTTTGGAGAAAAAAGCCCCTATTGAGGTGATAATGCCAAAAGCTAGAGTTGAAGACGAAGACTTCTTGTTTTCCATGAGGCTTCGGATAGGGGGCAAGCCTTCAGGATCTGCAGTCATAATATCTGGGGATGGAACAGCAACTGTCTCCCATTATTATAGAAACTCTACACAACTCTATCAGTTTGATTTACCCTATGATGCTGGGAAAGTGCTAGATGCTTCTATCCTTCCTTCTGCAGATGATTATGAAGAAGGTGCATGGGTTGTATTAACAGAGAAAGCAGGAATATGGGCAATACCAGAGAAAGCTGTCATACTTGGAGGAGTGGAACCACCTGAGAGAAGCTTATCTCGTAAAGGCAGTTCAAATGAAAGATCTGCACAAGAAGAGATAAGAAATCTTACATTTGCAGGTAATTTTGCTCCTAGAAGGGCTAGCTCTGAAGCATGGAGTGCTGGAGACAAACAGAGGATGGTTTTGAGTGGGATTGCACGTCGAACTGCACTAGATGAAGAATCAGAAGCTTTATTGAATAATCTTTTCAATGAATTTTTAACATCTGGCCAAATTGACAGGTCTCTTGAAAAGCTAGAAACTTCTGGTTCATTTGAAAGGGATGGGGAAACCAATGTTTTTGTTCGGATGAGCAAATCAATTATAGACACCTTAGCTAAACATTGGACAACAACCAGAGGTGTAGAGATTTTGGCCATGGCTGTTGTTTCAACCCAACTCTTAGAAAAGCAACAGAAACATAAAAAGTTCCTTCACTTTCTTGCCTTATCCAAATGCCACGAGGAGCTGTGTTCTAAGCAGAGACATGCATTGCAAATTATTTTGGAGCATGGTGAAAAGTTATCTGCAATGATTCAGCTGAGGGAACTGCAAAATCTGATTAGCCAAAATCGATCAACTAATGTTGACTCCTCAAATTCTAGCTTGGATATTCAGACGTCAGGTGCTCTTTGGGACATGATACAATTAGTTGGTGAGAGAGCTCGTCGGAATACTGTCCTTTTGATGGATAGAGATAATGCTGAAGTGTTCTACAGTAAGGTTTCAGATCTTGAAGATCTCTTTTACTGCTTAGATGCAGAGTTAGAATATGTTATAAGACCAGAGCATCCATTAGGAATCCAGATTCAGAGGGCATGCAAACTCTCTACTGCATGTGTTACCATAATTAGGACATGCTTCAACTATAAAAATGAGAACCGATTATGGTATCCACCACCTGAAGGTTTAACACCTTGGTATTGCAAACCTGTTGTACGGACTGGTATTTGGAGTGTTGCTTCTGTCCTGCTTCACTTGTTAAATGAAATATCTGGACTTGATAAAACAGCAAAATTAGATCTGTACAATCATTTAGAAGCCCTAGCTGAAGTTCTACTTGAGGCATATTCTGGTGCTGTTACAGCTAAAAATGAGTGTGGAGAAGAACACAAAGGTCTGTTAAATGAATATTGGGAGAGGCGAGATAGCCTTCTTGAATCTCTCTATCAAAAAGTTAAAGAATTTGAAGATACTCGCAAGGATTCGATTGAAGGAGCTGGAGAGCAGAATGAAGAGGCCTTAATGAAGGTTACTTCACATCTGTTATCAATTGCTAAACGACATGGATGCTACAAAGTTATGTGGACAATTTGTTGTGATGTGAATGACTCAGAATTACTGAGAAATATTATGCATGAAAGCCTGGGACCTAATGGGGGATTTAGTTACTATGTCTTTAAGAAACTCCATGAAAGCAGACAATTTTCTCAACTTTTAAGGTTAGGGGAAGAATTTCCTGATGAGCTATCCATTTTCCTGAGGGAGCATCCAGATCTTCTTTGGCTTCATGATTTGTTCCTTCATCAATTTTCCTCTGCTTCAGAAACACTTCATGCATTGGCTCTCTTACAAAACATGCAATCTACTTCTGTTGCTGAAGAGGAAGGAGAACAGGAGTATATGAAGATGAAACTAAAATTGACTGACAGAAAAAATCTTTTATTTCTCTCTAAGGTTGCTGCCTTTGCAGCTGGTAACGAAGCTGGTACTCAAGTCAAGGTGGACCGCATTGAGGCTGATTTGAAGATTCTAAAATTACAGGAGGAAGTAATGAAACGTCATCCTTCCATTGAAGATCAGCTGCTTCATCCTGAAGACTTGATTAAATTGTGCCTGGAAGGTGAAGATCGAGAACTCTCGTTGTGGGCGTTTGACGTGTTTGCATGGACTAGTTCCCTGTTTCGGAAGATCCACAGAAAACTTTTGGAGGATTGTTGGAAGAAAGCTGCTAGTCAGGACGATTGGAGTAAATTCCATGATTCATACATAGCTGAAGGATGGAGTGACCAGGAAATCCTGCAAAACTTAAAAAATACTATACTTTTCCAGGCTTCAAGTAGGTGTTATGGACCTCAAAGTGAAACATTTGAAGAAGGGTTTGGCCAAGTATTTTCCTTGAGACAAGAAAACATGGAGACTTCTATTTTGGGGGATATGGGTAGTTCAGTTGAAACAATATTGATGCAGCACAAGGATTTTCCAGTTGCAGGCAAACTTATGCTAATGGCAATCATGCTAGGCAGCGAGCATAGTAGTGACATCAGAATTGAAGAAGGACCTTCCCCAATGGAATAG

Predicted protein sequences of Glyma02g47530

Limit To All Plant Sequences

>Glyma02g47530.1   sequence type=predicted peptide   gene model=Glyma02g47530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSCGTKKSNVRSRREQGRDSTVVDSPVTPARTSFHDNAVPNRPTTGTPVPWAPRLSVLARVPQVNRTGKGDDTDPTKPVFVGEFPQVVRDEQSILLHNRIPAEDRVCGGIDKSTSLAWIICGNRVYLWCYLSPASSVKCAVLEIPLNDADVGRNHAGSWLLCVVNCDATSVGTNKVAKQCNSAAVVLCNCRTRAVIYWPDIYSQLHAPVTSLVSSDELEAVLTPDRKASFNRQRRQSKLGSSLSGLHTFNSMIASADPSCKFVCVALACSSSDELWQFKCTPTGIHRRKVYENIMHFPLQQGESGQIVSNIGYPRSLMWHFPHYSIQESSRQFLVLTDHEIQCFRVEFGSDIPISKLWSQAIVGTDAEVGIKKDLAGQKRIWPLDMQVDDHGKVITILVATFCNDRISSSSYMQYSLLIMQYKSGMGLETTNDRVLEKKAPIEVIMPKARVEDEDFLFSMRLRIGGKPSGSAVIISGDGTATVSHYYRNSTQLYQFDLPYDAGKVLDASILPSADDYEEGAWVVLTEKAGIWAIPEKAVILGGVEPPERSLSRKGSSNERSAQEEIRNLTFAGNFAPRRASSEAWSAGDKQRMVLSGIARRTALDEESEALLNNLFNEFLTSGQIDRSLEKLETSGSFERDGETNVFVRMSKSIIDTLAKHWTTTRGVEILAMAVVSTQLLEKQQKHKKFLHFLALSKCHEELCSKQRHALQIILEHGEKLSAMIQLRELQNLISQNRSTNVDSSNSSLDIQTSGALWDMIQLVGERARRNTVLLMDRDNAEVFYSKVSDLEDLFYCLDAELEYVIRPEHPLGIQIQRACKLSTACVTIIRTCFNYKNENRLWYPPPEGLTPWYCKPVVRTGIWSVASVLLHLLNEISGLDKTAKLDLYNHLEALAEVLLEAYSGAVTAKNECGEEHKGLLNEYWERRDSLLESLYQKVKEFEDTRKDSIEGAGEQNEEALMKVTSHLLSIAKRHGCYKVMWTICCDVNDSELLRNIMHESLGPNGGFSYYVFKKLHESRQFSQLLRLGEEFPDELSIFLREHPDLLWLHDLFLHQFSSASETLHALALLQNMQSTSVAEEEGEQEYMKMKLKLTDRKNLLFLSKVAAFAAGNEAGTQVKVDRIEADLKILKLQEEVMKRHPSIEDQLLHPEDLIKLCLEGEDRELSLWAFDVFAWTSSLFRKIHRKLLEDCWKKAASQDDWSKFHDSYIAEGWSDQEILQNLKNTILFQASSRCYGPQSETFEEGFGQVFSLRQENMETSILGDMGSSVETILMQHKDFPVAGKLMLMAIMLGSEHSSDIRIEEGPSPME*

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