Glyma02g47510 - SoyBase

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Report for Sequence Feature Glyma02g47510

Feature Type:	gene_model
Chromosome:	Gm02
Start:	51074126
stop:	51077513
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g47510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G05230	AT	Annotation by Michelle Graham. TAIR10: DNAJ heat shock N-terminal domain-containing protein \| chr2:1899818-1901938 REVERSE LENGTH=706	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
PTHR25040	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25040:SF41	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
PF11926	PFAM	Domain of unknown function (DUF3444)	JGI		ISS
UniRef100_G7KEM2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Curved DNA-binding protein n=1 Tax=Medicago truncatula RepID=G7KEM2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M6B1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M6B1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g47510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g47510

Paralog	Evidence	Comments
Glyma14g01250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g47510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g305000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g47510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g47510

Limit To All Plant Sequences

>Glyma02g47510.2   sequence type=CDS   gene model=Glyma02g47510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAAACAAGGAGGAAGCACTTAAAGCGATAGAGATTGCTGAAAAGCGATTTGCTCTGAGAGACTTTGCCGGTGCAAAAAACTATGCTGTAAAGGCTAAAACACTCTGTCCAGGATTGGAGGGTATATCTCAAATGGTGGCCACATTTGAAGTTTACGTTGCTTCTGAGGTCAAACATAATGGTGATCTAGATTACTATTCGATTCTTGGATTAAAACCTTTTGCAGATAAGGAGGCTGTGAAGAAACAGTACAAGAAGTTGGCAGTGTTGCTTCACCCAGATAAGAACAAATGTGTGGGAGCTGATGAGGCATTTAAGCTTGTTTCTGAGGCTTGGACTTGGCTATCAGATAGTGCTATGCGCAGTTCTTATGATCTCAAGAGAAATGTGCAGCTGGGTGGGGCTAACCAGACAAATTTGTCTCCTGCCCATGCTACAGGGACTGCAGGTTATACCAAATGTTCCAATTTGCCAACCCCTTGTGGTAGGCTTGACACCTTTTGGACAATCTGCACCTCTTGTAAGGTTCAGTATGAGTATCTGCGCAAGTATGTGAATAAAAGACTCTCTTGTAAGAACTGTCGTGGCACTTTTGTTGCTGTTGAAACTGGGGCGGCCCCAGCAAATGGTTCGTTTCCATATTGTCCTTGGTCATATGTGGCAGGAAATGGGTATGGAAGTCATTCATTTGATGGAGTTACATATGTTCCAACTAGTGCCCCCTATTTCAATGGGAATGGGGTCACAGGGTACCATTCTGGACATGGTTATGAGTACGTTCCAAATGTTTCATTTCAGTGGGGCTCTGCTGGAGTTGTCAACCAAAATGGATCAACTACCTTACCTGCTGATTCTGTTCATCGGGCCAATGGAAATGTGAAGAGGGGAAGGCCAAAAGTCAAGTTGGGAGCTGATAAGAGGCATCACGTGATAGAGACTATGGTCAATACAAATTCAGATGTACCATTCTCCTGTAGTGAACCACAGGAAGATAAACTAAGTAGACCTGACAAGAAACAGAAAGTTGTTGTGGGAGCCAGTTTCAGAAATGGCTATGAAGAAAAGGGTTCAAAATGTGCTTCAGAGTTGATAGTGGCTAACGGAAATGATAGCATGGGACATGGCCAAAAGCCTTCCTGCACAGTCGAAGTTCAAACCAAACAGTGTTCCATGGCACCAGCATTTGACGCAAGAAAATTATTGATTGAGAAAGCCAGGAAAGAAATCAGGAAGAAACTGGAGGAGATGAAGTTGTCGTCTGCAGCAGCAGCTGCTGCAGCTCTGAATGAGAAAGAAAAATCACAAGCTGAAGTTGGTAAAGTAAAAAGAGAGACATGTAGAAAAGCAGCTCCGAATGTTTCTGGTCTACAATTAGAGAATGGGAAAACTGGTCCAGTCTCAATTACTGTCCCAGATTCTGACTTTCATGACTTTGACAAAGATAGGTCAGAGGAATGCTTCAGGCCAAAGCAAATATGGGCCTTGTATGATGAGGAAGATGGAATGCCACGGTTGTATTGTATGATCCGTGAGGTTGTGTCTGTCAATCCATTTAAGATTCACATCAGTTACTTGAGTTCCAAAACTGATAGTGAGTTTGGCTCAGTAAACTGGCTTGATTCAGGTTTTACCAAATCTTGTGGAAATTTCAGGGCTTTCAATTCAGATGCTGTTGATCAAGTTAACATATTTTCTCATGTTCTAAATAAGGAGAAGGCTGGTCGAGGTGGTTGTGTCCGAATATATCCTAGAAGTGGAGATATTTGGGCTGTGTATCGAAATTGGTCGCCAGATTGGAGCAGATCTACTCCAGATGAAGTGAGGCATCAGTATGAAATGGTTGAGGTGCTGGATGATTACTCTGAGGAACTTGGTGTTTGTGTTAGTCCTCTTATTAAGTTGGCTGGATTTAAAACGGTATATCAGAGTAATACAGACAAGAGTACCATAAAATGGATACCCAGAAGAGAGATGTTGCGCTTTTCACATCAAGTGCCTTCTTGGTTACTGAAGGGGGAAGCTAGCAATTTGCCTGAAAGGTGTTGGGACCTTGATCCGGCTGCAACTCCAGATGAGCTTCTTCATGCTGCTACAGAACCAAATGCTTTGTAG

Predicted protein sequences of Glyma02g47510

Limit To All Plant Sequences

>Glyma02g47510.2   sequence type=predicted peptide   gene model=Glyma02g47510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEANKEEALKAIEIAEKRFALRDFAGAKNYAVKAKTLCPGLEGISQMVATFEVYVASEVKHNGDLDYYSILGLKPFADKEAVKKQYKKLAVLLHPDKNKCVGADEAFKLVSEAWTWLSDSAMRSSYDLKRNVQLGGANQTNLSPAHATGTAGYTKCSNLPTPCGRLDTFWTICTSCKVQYEYLRKYVNKRLSCKNCRGTFVAVETGAAPANGSFPYCPWSYVAGNGYGSHSFDGVTYVPTSAPYFNGNGVTGYHSGHGYEYVPNVSFQWGSAGVVNQNGSTTLPADSVHRANGNVKRGRPKVKLGADKRHHVIETMVNTNSDVPFSCSEPQEDKLSRPDKKQKVVVGASFRNGYEEKGSKCASELIVANGNDSMGHGQKPSCTVEVQTKQCSMAPAFDARKLLIEKARKEIRKKLEEMKLSSAAAAAAALNEKEKSQAEVGKVKRETCRKAAPNVSGLQLENGKTGPVSITVPDSDFHDFDKDRSEECFRPKQIWALYDEEDGMPRLYCMIREVVSVNPFKIHISYLSSKTDSEFGSVNWLDSGFTKSCGNFRAFNSDAVDQVNIFSHVLNKEKAGRGGCVRIYPRSGDIWAVYRNWSPDWSRSTPDEVRHQYEMVEVLDDYSEELGVCVSPLIKLAGFKTVYQSNTDKSTIKWIPRREMLRFSHQVPSWLLKGEASNLPERCWDLDPAATPDELLHAATEPNAL*

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