SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G56090 | AT | Annotation by Michelle Graham. TAIR10: cytochrome c oxidase 15 | chr5:22714634-22716605 FORWARD LENGTH=457 | SoyBase | E_val: 0 | ISS |
| GO:0006784 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heme a biosynthetic process | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0019745 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016627 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors | SoyBase | N/A | ISS |
| KOG2725 | KOG | Cytochrome oxidase assembly factor COX15 | JGI | ISS | |
| PTHR23289 | Panther | CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX15 | JGI | ISS | |
| PF02628 | PFAM | Cytochrome oxidase assembly protein | JGI | ISS | |
| UniRef100_G7K4U8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome c oxidase assembly protein COX15-like protein n=1 Tax=Medicago truncatula RepID=G7K4U8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JJM8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJM8_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma02g47340 not represented in the dataset |
Glyma02g47340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g01420 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g303400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g47340.2 sequence type=transcript gene model=Glyma02g47340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTTTTAAAAAAAAAAAGTGAAAAGAAGGCAACAGCCACAGCCCACAGGCCTACGAAAGGTGGTAGAAATAAGCGTCTTGGGCAAAACAAAACCTTGGTTAAACCCTGAACTCAAAGTTGCATTACAGGAGAGAGAGAGAGAGAGAGAGAGATGTTTGGGAGGGGAACGGTGTGGTCAGTGTTGAGGCGCGGCAAAGAAGCTTGCGGCGGATTTCACAAGCTGAGAGGAACGCCTTTCTCTTATTCTTCTTCTTCAACACCTTTCAAGTTCTTATCCCCTCCCGTCTCCACCCATTGCTTTCATGCTTTCCGATCCCAACTAATCCCCAAGGGTCATCATGTTCATGTGCCACAAATGAGGAACTTTTCTAAGATGGTCTCTGCTGAACAAAAGGAGGAGGGATTAAAGCTGCTAGTGAGTGGGGGTTCTCGTGCTCAGAAATTGGTTGGAATATGGCTCTTTGGGTCAGCGGCATGGGTGTTCAGCATGGTGGTGCTCGGGGGTTTAACAAGACTCACCCGATCTGGTCTTTCAATGACTGATTGGAAATTCACCGGTACTCTCCCTCCTTTCTCGGATGAAGAATGGTTGCAAGAGTTTGACAAATATAAGCAGTCACCTGAGTTCAAGCGTGTTAACAGAGGCATGAAGATTGAAGAATTCAAATTCATATATTGGATGGAATATGCACATCGTATGTGGGGAAGGGCACTAGGAGTTATGTTTGCTTTGCCATATTCATATTTTCTTCATAAGGGGTATATTACCTTGAGATTGGGACTGAGACTCTCTGCTCTGTTTGCCCTGGGTGCTGGGCAGGGTCTCATTGGTTGGTGGATGGTCAAAAGTGGTTTAGAGGAACCACCATCTGAATATTCTCAGCCAAGGGTAAGCCCTTATCGTCTTGCAGCTCATCTTACATCAGCATTTGCTATTTACTGTGGCCTCTTTTGGACTGCACTTTCTGTTGTTATGCCTGAACCACCAGCTGAATCACTAACATGGGTTCGTGGGGCAGCTAAAGTGAGGAGACTTGCATTGCCTATCAGCATACTTGTTGGTCTTACTGCAGTCTCTGGTGCATTCGTTGCTGGAAATGATGCTGGGCATGCTTTTAATACTTTCCCAAAGATGGGTGATACATGGATACCAGGAGACATTTTTGAAATGAAGCCTCTGATTCGAAATTTCTTTGAGAATACGGCAACTGTGCAGCTTGATCACCGTATACTTGCAACTGCAACTCTGATTTCTGTGAGCATTTTATGGTGGTCAACAAGAAAGCTGGAGATACATCCTGCAGTACGATCTGTGATTGGAGGTGCTGTTGGCATGGCAACTCTTCAGGTCACCTTAGGAATTTCAACGCTTCTTTCATATGTACCTGTTTCACTGGGCACTGCACATCAGGCTGGAGCCTTGACACTTCTGACATTTATGTTACTTCTTAATCACACGGTTCGAAGACCGTCTTTGTCCCTTCTCAAATCTCTGCCTCAAGTTGGAAAAGCACACTAATTGTTTCCCGATATTATATTGCATCAAGGCTTAGGCCTTTTAAGTTGACAAAATCTGTGGCTATTATTTTTTCCATGCTAAATTTTGCGTTGAGCTCCTTCTCCAATTTTCCACTGTTGGAATCTTCTGTATTTGTTTTGTACATTTGAAGCATGAAAATTCATGATGATGCAACTGTTCTGTTGATTATGTAATGAGCAGATACATATTATCAGAAATTATAACATGTGATTGGATGAAGAGAATAAAAAAATTGTAATTTAACTGATCTGTTAACATGATATCCAAGGTTTTTCCAGGGTGGAGCTGTGGAGGCTACCTTAAATGAATATTTTG
>Glyma02g47340.1 sequence type=CDS gene model=Glyma02g47340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGGGAGGGGAACGGTGTGGTCAGTGTTGAGGCGCGGCAAAGAAGCTTGCGGCGGATTTCACAAGCTGAGAGGAACGCCTTTCTCTTATTCTTCTTCTTCAACACCTTTCAAGTTCTTATCCCCTCCCGTCTCCACCCATTGCTTTCATGCTTTCCGATCCCAACTAATCCCCAAGGGTCATCATGTTCATGTGCCACAAATGAGGAACTTTTCTAAGATGGTCTCTGCTGAACAAAAGGAGGAGGGATTAAAGCTGCTAGTGAGTGGGGGTTCTCGTGCTCAGAAATTGGTTGGAATATGGCTCTTTGGGTCAGCGGCATGGGTGTTCAGCATGGTGGTGCTCGGGGGTTTAACAAGACTCACCCGATCTGGTCTTTCAATGACTGATTGGAAATTCACCGGTACTCTCCCTCCTTTCTCGGATGAAGAATGGTTGCAAGAGTTTGACAAATATAAGCAGTCACCTGAGTTCAAGCGTGTTAACAGAGGCATGAAGATTGAAGAATTCAAATTCATATATTGGATGGAATATGCACATCGTATGTGGGGAAGGGCACTAGGAGTTATGTTTGCTTTGCCATATTCATATTTTCTTCATAAGGGGTATATTACCTTGAGATTGGGACTGAGACTCTCTGCTCTGTTTGCCCTGGGTGCTGGGCAGGGTCTCATTGGTTGGTGGATGGTCAAAAGTGGTTTAGAGGAACCACCATCTGAATATTCTCAGCCAAGGGTAAGCCCTTATCGTCTTGCAGCTCATCTTACATCAGCATTTGCTATTTACTGTGGCCTCTTTTGGACTGCACTTTCTGTTGTTATGCCTGAACCACCAGCTGAATCACTAACATGGGTTCGTGGGGCAGCTAAAGTGAGGAGACTTGCATTGCCTATCAGCATACTTGTTGGTCTTACTGCAGTCTCTGGTGCATTCGTTGCTGGAAATGATGCTGGGCATGCTTTTAATACTTTCCCAAAGATGGGTGATACATGGATACCAGGAGACATTTTTGAAATGAAGCCTCTGATTCGAAATTTCTTTGAGAATACGGCAACTGTGCAGCTTGATCACCGTATACTTGCAACTGCAACTCTGATTTCTGTGAGCATTTTATGGTGGTCAACAAGAAAGCTGGAGATACATCCTGCAGTACGATCTGTGATTGGAGGTGCTGTTGGCATGGCAACTCTTCAGGTCACCTTAGGAATTTCAACGCTTCTTTCATATGTACCTGTTTCACTGGGCACTGCACATCAGGCTGGAGCCTTGACACTTCTGACATTTATGTTACTTCTTAATCACACGGTTCGAAGACCGTCTTTGTCCCTTCTCAAATCTCTGCCTCAAGTTGGAAAAGCACACTAA >Glyma02g47340.2 sequence type=CDS gene model=Glyma02g47340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGGGAGGGGAACGGTGTGGTCAGTGTTGAGGCGCGGCAAAGAAGCTTGCGGCGGATTTCACAAGCTGAGAGGAACGCCTTTCTCTTATTCTTCTTCTTCAACACCTTTCAAGTTCTTATCCCCTCCCGTCTCCACCCATTGCTTTCATGCTTTCCGATCCCAACTAATCCCCAAGGGTCATCATGTTCATGTGCCACAAATGAGGAACTTTTCTAAGATGGTCTCTGCTGAACAAAAGGAGGAGGGATTAAAGCTGCTAGTGAGTGGGGGTTCTCGTGCTCAGAAATTGGTTGGAATATGGCTCTTTGGGTCAGCGGCATGGGTGTTCAGCATGGTGGTGCTCGGGGGTTTAACAAGACTCACCCGATCTGGTCTTTCAATGACTGATTGGAAATTCACCGGTACTCTCCCTCCTTTCTCGGATGAAGAATGGTTGCAAGAGTTTGACAAATATAAGCAGTCACCTGAGTTCAAGCGTGTTAACAGAGGCATGAAGATTGAAGAATTCAAATTCATATATTGGATGGAATATGCACATCGTATGTGGGGAAGGGCACTAGGAGTTATGTTTGCTTTGCCATATTCATATTTTCTTCATAAGGGGTATATTACCTTGAGATTGGGACTGAGACTCTCTGCTCTGTTTGCCCTGGGTGCTGGGCAGGGTCTCATTGGTTGGTGGATGGTCAAAAGTGGTTTAGAGGAACCACCATCTGAATATTCTCAGCCAAGGGTAAGCCCTTATCGTCTTGCAGCTCATCTTACATCAGCATTTGCTATTTACTGTGGCCTCTTTTGGACTGCACTTTCTGTTGTTATGCCTGAACCACCAGCTGAATCACTAACATGGGTTCGTGGGGCAGCTAAAGTGAGGAGACTTGCATTGCCTATCAGCATACTTGTTGGTCTTACTGCAGTCTCTGGTGCATTCGTTGCTGGAAATGATGCTGGGCATGCTTTTAATACTTTCCCAAAGATGGGTGATACATGGATACCAGGAGACATTTTTGAAATGAAGCCTCTGATTCGAAATTTCTTTGAGAATACGGCAACTGTGCAGCTTGATCACCGTATACTTGCAACTGCAACTCTGATTTCTGTGAGCATTTTATGGTGGTCAACAAGAAAGCTGGAGATACATCCTGCAGTACGATCTGTGATTGGAGGTGCTGTTGGCATGGCAACTCTTCAGGTCACCTTAGGAATTTCAACGCTTCTTTCATATGTACCTGTTTCACTGGGCACTGCACATCAGGCTGGAGCCTTGACACTTCTGACATTTATGTTACTTCTTAATCACACGGTTCGAAGACCGTCTTTGTCCCTTCTCAAATCTCTGCCTCAAGTTGGAAAAGCACACTAA
>Glyma02g47340.1 sequence type=predicted peptide gene model=Glyma02g47340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFGRGTVWSVLRRGKEACGGFHKLRGTPFSYSSSSTPFKFLSPPVSTHCFHAFRSQLIPKGHHVHVPQMRNFSKMVSAEQKEEGLKLLVSGGSRAQKLVGIWLFGSAAWVFSMVVLGGLTRLTRSGLSMTDWKFTGTLPPFSDEEWLQEFDKYKQSPEFKRVNRGMKIEEFKFIYWMEYAHRMWGRALGVMFALPYSYFLHKGYITLRLGLRLSALFALGAGQGLIGWWMVKSGLEEPPSEYSQPRVSPYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAESLTWVRGAAKVRRLALPISILVGLTAVSGAFVAGNDAGHAFNTFPKMGDTWIPGDIFEMKPLIRNFFENTATVQLDHRILATATLISVSILWWSTRKLEIHPAVRSVIGGAVGMATLQVTLGISTLLSYVPVSLGTAHQAGALTLLTFMLLLNHTVRRPSLSLLKSLPQVGKAH* >Glyma02g47340.2 sequence type=predicted peptide gene model=Glyma02g47340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFGRGTVWSVLRRGKEACGGFHKLRGTPFSYSSSSTPFKFLSPPVSTHCFHAFRSQLIPKGHHVHVPQMRNFSKMVSAEQKEEGLKLLVSGGSRAQKLVGIWLFGSAAWVFSMVVLGGLTRLTRSGLSMTDWKFTGTLPPFSDEEWLQEFDKYKQSPEFKRVNRGMKIEEFKFIYWMEYAHRMWGRALGVMFALPYSYFLHKGYITLRLGLRLSALFALGAGQGLIGWWMVKSGLEEPPSEYSQPRVSPYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAESLTWVRGAAKVRRLALPISILVGLTAVSGAFVAGNDAGHAFNTFPKMGDTWIPGDIFEMKPLIRNFFENTATVQLDHRILATATLISVSILWWSTRKLEIHPAVRSVIGGAVGMATLQVTLGISTLLSYVPVSLGTAHQAGALTLLTFMLLLNHTVRRPSLSLLKSLPQVGKAH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
