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Report for Sequence Feature Glyma02g47300

Feature Type:gene_model
Chromosome:Gm02
Start:50932083
stop:50933999
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g47300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G26490AT Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr4:13380425-13381231 FORWARD LENGTH=268 SoyBaseE_val: 4.00E-80ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03168PFAM Late embryogenesis abundant protein JGI ISS
UniRef100_I1JJM4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJM4_SOYBN SoyBaseE_val: 1.00E-161ISS
UniRef100_Q56Y59UniRef Annotation by Michelle Graham. Most informative UniRef hit: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family member n=2 Tax=Arabidopsis thaliana RepID=Q56Y59_ARATH SoyBaseE_val: 2.00E-77ISS

Expression Patterns of Glyma02g47300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g47300
ParalogEvidenceComments
Glyma14g01460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g47300 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g303100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g47300
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g47300
>Glyma02g47300.1   sequence type=CDS   gene model=Glyma02g47300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAACCGAATCTGGTCCAAATGTGGTGGCTAATGAAGAACTTGGCACACCAAAACAACCAAGGAATCAACATTCTCAGCAATCAGGAGCACCAAATTCCCTTGCCAACACCAGAGCCATTTTCGGGCAACCTCGACTTCAAAGGACAAAACCAATTATATGGTGTGCTGCAATAATGTGCTTCATATTCAGCCTAGTGCTTATCTTCTTTGGAATTGCAACACTGATTCTCTACCTTTCCATGAAGCCGCGAAACCCCACGTTTGACATTCCCAATGCAAGCCTCAATGTGGTGTACTTTGACTCACCACAGTACCTCAATGGTGAATTCACTCTCCTTGCAAATTTTTCCAATCCTAACAGGAGAATTGGGGTGAGGTTTGAGTCCTTGAACATTGAGCTTTTCTACTCAGACAGGCTCGTTTCTTCACAAACAATAAAGCCTTTTACTCAAAGGCCAAGGGAAAACAGGTTGCAATCAGTGAACTTGATATCAAGCTTGGTGTTTTTGCCTCAAGATGTTGGTGTAAAACTACAAAGGCAAGTGGAGAATAACAGGGTCAATTACAATGCAAGGGGAACATTTAAGGTGAGGTTCAATGTTGGCCTTATCCATTTATCTTACTCTCTGTATAGCACATGCCAGATAGAGATGACTAGTCCTCCAGCGGGTATTCTAGTAGCCAGACAATGCATAACAAACCGATGA
Predicted protein sequences of Glyma02g47300
>Glyma02g47300.1   sequence type=predicted peptide   gene model=Glyma02g47300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPTESGPNVVANEELGTPKQPRNQHSQQSGAPNSLANTRAIFGQPRLQRTKPIIWCAAIMCFIFSLVLIFFGIATLILYLSMKPRNPTFDIPNASLNVVYFDSPQYLNGEFTLLANFSNPNRRIGVRFESLNIELFYSDRLVSSQTIKPFTQRPRENRLQSVNLISSLVFLPQDVGVKLQRQVENNRVNYNARGTFKVRFNVGLIHLSYSLYSTCQIEMTSPPAGILVARQCITNR*






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