Glyma02g47280 - SoyBase

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Report for Sequence Feature Glyma02g47280

Feature Type:	gene_model
Chromosome:	Gm02
Start:	50927144
stop:	50929908
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g47280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26530	AT	Annotation by Michelle Graham. TAIR10: Aldolase superfamily protein \| chr4:13391566-13392937 FORWARD LENGTH=358	SoyBase	E_val: 0	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0009718	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004332	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fructose-bisphosphate aldolase activity	SoyBase	N/A	ISS
KOG1557	KOG	Fructose-biphosphate aldolase	JGI		ISS
PTHR11627	Panther	FRUCTOSE-BISPHOSPHATE ALDOLASE	JGI		ISS
PF00274	PFAM	Fructose-bisphosphate aldolase class-I	JGI		ISS
UniRef100_I1JJM3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Fructose-bisphosphate aldolase n=1 Tax=Glycine max RepID=I1JJM3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JJM3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fructose-bisphosphate aldolase n=1 Tax=Glycine max RepID=I1JJM3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g47280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g47280

Paralog	Evidence	Comments
Glyma14g01470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g47280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g303000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g47280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g47280

Limit To All Plant Sequences

>Glyma02g47280.1   sequence type=CDS   gene model=Glyma02g47280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGCCTTTGTTGGAAAGTACGCAGATGAGCTTATCAAGAATGCCAAGTACATAGCCACACCAGGGAAGGGGATCCTGGCAGCAGATGAGAGCACGGGCACCATCGGGAAGCGCCTAGCGAGCATTAACGTTGAGAACATTGAGGCCAACCGCCAAGCCCTTCGCGAGCTTCTCTTCACCGCTCCAAATGCCCTCCAATACCTCTCTGGTGTCATCCTCTTTGAGGAAACTCTTTACCAGAAGACCTCTGATGGGAAGCCTTTCGTTGAGGTCCTTCAAGAGAACAATGTCATCCCAGGCATCAAAGTGGACAAGGGTGTTGTTGAGTTGGCTGGCACAAACGGTGAAACCACCACTCAGGGCTTCGACTCTCTCGGAGCTCGGTGCCAGCAGTACTACAAGGCTGGTGCACGCTTTGCAAAGTGGCGTGCAGTTCTCAAAATTGGCCCAACTGAGCCCTCTCAGTTGTCCATCCAGCAAAATGCACAGGGCTTGGCACGCTATGCCATCATTTGCCAGGAGAATGGCCTTGTGCCCATTGTTGAGCCTGAGATTTTGACTGATGGGGCTCATGACATCGCCAAATGTGCTGCTGTTACTGAAACTGTGCTTGCAGCTGTTTACAAGGCACTCAATGAGCAGCATGTCCTTCTTGAAGGAACTCTTCTCAAGCCCAACATGGTTACTCCCGGCTCTGATAGCCCAAAGGTACCACCTGAGGTGATTGCTGAGTACACAGTTCAAGCACTCCGCAGGACTGTCCCAGCTGCGGTGCCAGGGGTTGTGTTTCTGTCTGGTGGGCAAAGTGAAGAAGAAGCTACCCTCAACCTGAATGCAATGAACAAGTCGGAGCTGTTGAAGCCATGGACTCTCTCATTCTCATTCGGGCGAGCACTGCAACAAAGCACACTCAAGACATGGGGTGGAAAGAAGGAGAATGTTGCCAAAGCTCAAGAGGCATTTCTGGCAAGATGCAAGGCCAATTCTGATGCTACTCTGGGAAAGTATGTTGGTGGAAGCGGAAGTGGCTTGACTTCTGAGAGTTTGTATGTCAAGAACTACAATTATTAA

Predicted protein sequences of Glyma02g47280

Limit To All Plant Sequences

>Glyma02g47280.1   sequence type=predicted peptide   gene model=Glyma02g47280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAFVGKYADELIKNAKYIATPGKGILAADESTGTIGKRLASINVENIEANRQALRELLFTAPNALQYLSGVILFEETLYQKTSDGKPFVEVLQENNVIPGIKVDKGVVELAGTNGETTTQGFDSLGARCQQYYKAGARFAKWRAVLKIGPTEPSQLSIQQNAQGLARYAIICQENGLVPIVEPEILTDGAHDIAKCAAVTETVLAAVYKALNEQHVLLEGTLLKPNMVTPGSDSPKVPPEVIAEYTVQALRRTVPAAVPGVVFLSGGQSEEEATLNLNAMNKSELLKPWTLSFSFGRALQQSTLKTWGGKKENVAKAQEAFLARCKANSDATLGKYVGGSGSGLTSESLYVKNYNY*

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