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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G55940 | AT | Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0172) | chr5:22656256-22657894 REVERSE LENGTH=208 | SoyBase | E_val: 3.00E-106 | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3289 | KOG | Uncharacterized conserved protein encoded by sequence overlapping the COX4 gene | JGI | ISS | |
| PTHR12941 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR12941:SF3 | Panther | gb def: cg3501 gene product [drosophila melanogaster] | JGI | ISS | |
| PF03665 | PFAM | Uncharacterised protein family (UPF0172) | JGI | ISS | |
| UniRef100_C6T3E5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T3E5_SOYBN | SoyBase | E_val: 1.00E-145 | ISS |
| UniRef100_Q9FG71 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ER membrane protein complex subunit 8/9 homolog n=3 Tax=Arabidopsis thaliana RepID=EMC89_ARATH | SoyBase | E_val: 1.00E-103 | ISS |
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Glyma02g47150 not represented in the dataset |
Glyma02g47150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g01600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g301900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g47150.2 sequence type=transcript gene model=Glyma02g47150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GACGTCGTTAGAAGTTGTGGGAATTGGCAAAGTGCGAAGTCCACAACAGTTGATAGTTGAGTTGATTGCATCTGCATCTGCTTGTGTTCGACATCGAAACAGAACAGGAACCTCAAACCTTTGTGTTGAGAATCTTAGCCATGGGCAGCAACGGTTTGAGGTACGAGATCGAACAAAACGCTTACATAAAACTCGTCCTTCACTCCCTCAAACACCCAACCTCCGCCGTCAACGGCGTCTTGATCGGTCGCATCTCCGCTTCCAACGACGTCGTCGAGATCGCCGATGCCGTCCCTCTCTTCCACTCTCACATCCCCCTTCTTCCCCAATTGGAGATATCTCTCATCATGATAGAGGAATATTTTTCTGCTAAAGGGTTGAACATAGTGGGCTATTTTCACGCGAATGAGAGATCTGATGACAGTGAGCTTGGTAGTGTGGCGAAGAATATTGGTGACCACATTTGCCGCTACTTTCCCCAAGCCGCCGTTCTATTGTTAGATAACAAGAAGCTCGATGCTTTGAAAAAGAGCAAGGACCGTAGTGCCATAATGCAGTCAGATGGGAACAATCGATTTTCTCTCAAAGAGCCATCAGCAAATCTAGTCTTGTTGGACTATATTGCATCCGAGAAGTGGAATGACGTTGTAGATTTTGATGACCATCTTGATGACATAAGCAAGGATTGGCTAAATCCAGGGCTTTTCAACTGATCCCAGCCCTTTTGTCTCCGTTTTTGCCCTATTTACTTTGCAAGTGGAGGATATTGAGGCTTATTCTGGTGCATATTCTGGATCCTCATCGAAGAACATTTAGGGACTATATTTTGACTTTTGACCCTAGGAAAGTTGCTTCATGAAGCTTTTTCAGTTGTATAAGCAGGATATTTACCACCAGTCCCTAAAGGATTTTGGTTGTGGAGCCTCTTCTTTTCTTTTTCTTTTTTACCTTGGATGTAGGTATATTAAAGTGGAGTTTTTTTTAACTCTTTTTTCGTTTGCTTTGCTTGTGAGTTGTGACGAACTTTGTTACTGGGTAGAAACAACAAAACCATCACTCCCGTTATCTTAGTTAATCCAATGGCTTTCTTATGTTTTTTATGTTTGCAAAGCATTCTCTTTTGAGATTTATGTATGTGATATTTTTATTCATAAGAAAAAATAAAATTGTGCTATATATGCCAAAGGGAGTGGGGCCTTCTTTACCATTTGAGGCCAATCTTTATCCGAAATTACCAAGTCAGG >Glyma02g47150.3 sequence type=transcript gene model=Glyma02g47150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GACGTCGTTAGAAGTTGTGGGAATTGGCAAAGTGCGAAGTCCACAACAGTTGATAGTTGAGTTGATTGCATCTGCATCTGCTTGTGTTCGACATCGAAACAGAACAGGAACCTCAAACCTTTGTGTTGAGAATCTTAGCCATGGGCAGCAACGGTTTGAGGTACGAGATCGAACAAAACGCTTACATAAAACTCGTCCTTCACTCCCTCAAACACCCAACCTCCGCCGTCAACGGCGTCTTGATCGGTCGCATCTCCGCTTCCAACGACGTCGTCGAGATCGCCGATGCCGTCCCTCTCTTCCACTCTCACATCCCCCTTCTTCCCCAATTGGAGATATCTCTCATCATGATAGAGGAATATTTTTCTGCTAAAGGGTTGAACATAGTGGGCTATTTTCACGCGAATGAGAGATCTGATGACAGTGAGCTTGGTAGTGTGGCGAAGAATATTGGTGACCACATTTGCCGCTACTTTCCCCAAGCCGCCGTTCTATTGTTAGATAACAAGAAGCTCGATGCTTTGAAAAAGAGCAAGGACCGTAGTGCCATAATGCAGGGATACATCTAAGAACTGGAAGTTGGTTCAGTCAGATGGGAACAATCGATTTTCTCTCAAAGAGCCATCAGCAAATCTAGTCTTGTTGGACTATATTGCATCCGAGAAGTGGAATGACGTTGTAGATTTTGATGACCATCTTGATGACATAAGCAAGGATTGGCTAAATCCAGGGCTTTTCAACTGATCCCAGCCCTTTTGTCTCCGTTTTTGCCCTATTTACTTTGCAAGTGGAGGATATTGAGGCTTATTCTGGTGCATATTCTGGATCCTCATCGAAGAACATTTAGGGACTATATTTTGACTTTTGACCCTAGGAAAGTTGCTTCATGAAGCTTTTTCAGTTGTATAAGCAGGATATTTACCACCAGTCCCTAAAGGATTTTGGTTGTGGAGCCTCTTCTTTTCTTTTTCTTTTTTACCTTGGATGTAGGTATATTAAAGTGGAGTTTTTTTTAACTCTTTTTTCGTTTGCTTTGCTTGTGAGTTGTGACGAACTTTGTTACTGGGTAGAAACAACAAAACCATCACTCCCGTTATCTTAGTTAATCCAATGGCTTTCTTATGTTTTTTATGTTTGCAAAGCATTCTCTTTTGAGATTTATGTATGTGATATTTTTATTCATAAGAAAAAATAAAATTGTGCTATATATGCCAAAGGGAGTGGGGCCTTCTTTACCATTTGAGGCCAATCTTTATCCGAAATTACCAAGTCAGG
>Glyma02g47150.1 sequence type=CDS gene model=Glyma02g47150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAGCAACGGTTTGAGGTACGAGATCGAACAAAACGCTTACATAAAACTCGTCCTTCACTCCCTCAAACACCCAACCTCCGCCGTCAACGGCGTCTTGATCGGTCGCATCTCCGCTTCCAACGACGTCGTCGAGATCGCCGATGCCGTCCCTCTCTTCCACTCTCACATCCCCCTTCTTCCCCAATTGGAGATATCTCTCATCATGATAGAGGAATATTTTTCTGCTAAAGGGTTGAACATAGTGGGCTATTTTCACGCGAATGAGAGATCTGATGACAGTGAGCTTGGTAGTGTGGCGAAGAATATTGGTGACCACATTTGCCGCTACTTTCCCCAAGCCGCCGTTCTATTGTTAGATAACAAGAAGCTCGATGCTTTGAAAAAGAGCAAGGACCGTAGTGCCATAATGCAGCTTTATGTTAGGGATACATCTAAGAACTGGAAGTTGGTTCAGTCAGATGGGAACAATCGATTTTCTCTCAAAGAGCCATCAGCAAATCTAGTCTTGTTGGACTATATTGCATCCGAGAAGTGGAATGACGTTGTAGATTTTGATGACCATCTTGATGACATAAGCAAGGATTGGCTAAATCCAGGGCTTTTCAACTGA >Glyma02g47150.2 sequence type=CDS gene model=Glyma02g47150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAGCAACGGTTTGAGGTACGAGATCGAACAAAACGCTTACATAAAACTCGTCCTTCACTCCCTCAAACACCCAACCTCCGCCGTCAACGGCGTCTTGATCGGTCGCATCTCCGCTTCCAACGACGTCGTCGAGATCGCCGATGCCGTCCCTCTCTTCCACTCTCACATCCCCCTTCTTCCCCAATTGGAGATATCTCTCATCATGATAGAGGAATATTTTTCTGCTAAAGGGTTGAACATAGTGGGCTATTTTCACGCGAATGAGAGATCTGATGACAGTGAGCTTGGTAGTGTGGCGAAGAATATTGGTGACCACATTTGCCGCTACTTTCCCCAAGCCGCCGTTCTATTGTTAGATAACAAGAAGCTCGATGCTTTGAAAAAGAGCAAGGACCGTAGTGCCATAATGCAGTCAGATGGGAACAATCGATTTTCTCTCAAAGAGCCATCAGCAAATCTAGTCTTGTTGGACTATATTGCATCCGAGAAGTGGAATGACGTTGTAGATTTTGATGACCATCTTGATGACATAAGCAAGGATTGGCTAAATCCAGGGCTTTTCAACTGA >Glyma02g47150.3 sequence type=CDS gene model=Glyma02g47150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAGCAACGGTTTGAGGTACGAGATCGAACAAAACGCTTACATAAAACTCGTCCTTCACTCCCTCAAACACCCAACCTCCGCCGTCAACGGCGTCTTGATCGGTCGCATCTCCGCTTCCAACGACGTCGTCGAGATCGCCGATGCCGTCCCTCTCTTCCACTCTCACATCCCCCTTCTTCCCCAATTGGAGATATCTCTCATCATGATAGAGGAATATTTTTCTGCTAAAGGGTTGAACATAGTGGGCTATTTTCACGCGAATGAGAGATCTGATGACAGTGAGCTTGGTAGTGTGGCGAAGAATATTGGTGACCACATTTGCCGCTACTTTCCCCAAGCCGCCGTTCTATTGTTAGATAACAAGAAGCTCGATGCTTTGAAAAAGAGCAAGGACCGTAGTGCCATAATGCAGGGATACATCTAA
>Glyma02g47150.1 sequence type=predicted peptide gene model=Glyma02g47150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSNGLRYEIEQNAYIKLVLHSLKHPTSAVNGVLIGRISASNDVVEIADAVPLFHSHIPLLPQLEISLIMIEEYFSAKGLNIVGYFHANERSDDSELGSVAKNIGDHICRYFPQAAVLLLDNKKLDALKKSKDRSAIMQLYVRDTSKNWKLVQSDGNNRFSLKEPSANLVLLDYIASEKWNDVVDFDDHLDDISKDWLNPGLFN* >Glyma02g47150.2 sequence type=predicted peptide gene model=Glyma02g47150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSNGLRYEIEQNAYIKLVLHSLKHPTSAVNGVLIGRISASNDVVEIADAVPLFHSHIPLLPQLEISLIMIEEYFSAKGLNIVGYFHANERSDDSELGSVAKNIGDHICRYFPQAAVLLLDNKKLDALKKSKDRSAIMQSDGNNRFSLKEPSANLVLLDYIASEKWNDVVDFDDHLDDISKDWLNPGLFN* >Glyma02g47150.3 sequence type=predicted peptide gene model=Glyma02g47150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSNGLRYEIEQNAYIKLVLHSLKHPTSAVNGVLIGRISASNDVVEIADAVPLFHSHIPLLPQLEISLIMIEEYFSAKGLNIVGYFHANERSDDSELGSVAKNIGDHICRYFPQAAVLLLDNKKLDALKKSKDRSAIMQGYI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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